Wall clock time and date at job start Tue Mar 31 2020 12:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47387 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99821 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00108 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99834 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47164 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46812 * 120.00223 * 12 10 8 15 15 H 1.48494 * 109.47320 * 240.00038 * 12 10 8 16 16 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 17 17 C 1.38302 * 119.89344 * 264.99855 * 16 2 1 18 18 C 1.38017 * 120.14392 * 179.97438 * 17 16 2 19 19 C 1.39328 * 119.93406 * 0.02562 * 18 17 16 20 20 C 1.48469 * 120.10806 * 180.02562 * 19 18 17 21 21 N 1.34049 * 126.66683 * 359.68943 * 20 19 18 22 22 N 1.28988 * 107.26429 * 179.83572 * 21 20 19 23 23 N 1.28737 * 108.94050 * 0.42874 * 22 21 20 24 24 H 0.97004 * 125.33716 * 179.75811 * 23 22 21 25 25 N 1.28871 * 109.31647 * 359.72862 * 23 22 21 26 26 C 1.39250 * 119.79060 * 359.97438 * 19 18 17 27 27 C 1.38278 * 119.85239 * 359.72752 * 26 19 18 28 28 F 1.35102 * 119.96829 * 180.29026 * 27 26 19 29 29 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 31 31 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 32 32 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 33 33 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 34 34 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 35 35 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 36 36 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 37 37 H 1.09001 * 109.46514 * 300.00105 * 7 6 5 38 38 H 1.08998 * 109.46924 * 59.99625 * 7 6 5 39 39 H 0.97004 * 119.99990 * 179.97438 * 11 10 8 40 40 H 1.08001 * 119.92759 * 359.97438 * 17 16 2 41 41 H 1.08003 * 120.03522 * 179.97438 * 18 17 16 42 42 H 1.07996 * 120.07363 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6611 0.4200 4.7695 8 6 3.1665 -0.3243 5.9784 9 1 3.4169 -1.3720 5.9018 10 6 3.3103 0.3327 7.1820 11 7 3.0059 1.6087 7.2752 12 14 3.9361 -0.5901 8.6808 13 1 4.2048 -2.0040 8.3151 14 1 5.1899 0.0426 9.1637 15 1 2.9119 -0.5422 9.7550 16 6 2.0323 -0.7104 -1.2304 17 6 2.3606 -2.0523 -1.1659 18 6 2.8206 -2.7082 -2.2897 19 6 2.9551 -2.0168 -3.4919 20 6 3.4490 -2.7187 -4.7034 21 7 3.8082 -4.0071 -4.7915 22 7 4.1726 -4.2204 -6.0103 23 7 4.0644 -3.1243 -6.6768 24 1 4.2796 -3.0154 -7.6164 25 7 3.6249 -2.1947 -5.8999 26 6 2.6237 -0.6657 -3.5538 27 6 2.1578 -0.0188 -2.4240 28 9 1.8301 1.2905 -2.4829 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.4495 -1.4979 1.4100 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 1.9202 -1.3567 3.8030 36 1 3.5917 -0.9263 3.3683 37 1 3.3369 1.2441 4.5408 38 1 1.6655 0.8130 4.9752 39 1 3.1067 2.0708 8.1221 40 1 2.2568 -2.5882 -0.2339 41 1 3.0768 -3.7560 -2.2372 42 1 2.7266 -0.1253 -4.4832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824584338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:07 Heat of formation + Delta-G solvation = 67.993509 kcal Electronic energy + Delta-G solvation = -25030.449283 eV Core-core repulsion = 21154.458607 eV Total energy + Delta-G solvation = -3875.990676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92851 -45.49545 -40.46648 -38.24875 -35.99380 -35.35488 -34.63810 -33.67920 -31.68278 -31.57209 -29.96118 -27.69580 -26.14586 -25.68960 -24.48024 -23.62831 -23.13248 -22.01215 -21.48054 -20.29312 -18.62030 -18.36159 -18.17236 -17.47596 -17.12356 -16.64268 -16.55281 -16.41239 -16.06382 -15.42531 -15.27812 -15.08399 -14.63157 -14.44970 -14.22736 -14.00639 -13.74223 -13.66816 -13.48572 -13.27701 -13.08091 -12.86462 -12.68378 -12.46427 -12.43520 -12.40303 -12.21928 -12.08212 -11.93046 -11.77104 -11.49769 -11.33298 -11.05226 -10.53546 -9.90488 -9.60519 -9.35051 -8.18080 -6.28575 -0.44183 0.13417 0.18810 1.20904 1.39307 1.41607 1.42086 1.55532 2.42733 2.52830 2.59762 3.01087 3.09517 3.15293 3.40793 3.65567 3.85721 4.04178 4.12884 4.17147 4.21270 4.31286 4.37890 4.39619 4.47493 4.63739 4.76303 4.78761 4.84585 5.00173 5.04957 5.09100 5.16054 5.20370 5.28943 5.33322 5.37176 5.56480 5.59249 5.78811 5.79854 5.89736 6.04378 6.29618 6.50181 6.89275 7.08309 7.40655 8.93948 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002068 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.710801 B =13539.394801 C =14454.744551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 H 0.079 0.921 4 N -0.678 5.678 5 C 0.074 3.926 6 C -0.092 4.092 7 C 0.023 3.977 8 C -0.540 4.540 9 H 0.061 0.939 10 C -0.004 4.004 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.261 1.261 14 H -0.280 1.280 15 H -0.278 1.278 16 C -0.082 4.082 17 C -0.069 4.069 18 C -0.080 4.080 19 C -0.005 4.005 20 C 0.211 3.789 21 N -0.288 5.288 22 N -0.055 5.055 23 N -0.199 5.199 24 H 0.495 0.505 25 N -0.294 5.294 26 C -0.112 4.112 27 C 0.086 3.914 28 F -0.141 7.141 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.351 0.649 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.053 0.947 37 H -0.011 1.011 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -8.736 -30.409 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.097 0.903 4 N -0.310 5.310 5 C -0.055 4.055 6 C -0.130 4.130 7 C -0.014 4.014 8 C -0.578 4.578 9 H 0.079 0.921 10 C -0.201 4.201 11 N -0.575 5.575 12 Si 0.790 3.210 13 H -0.185 1.185 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.085 4.085 17 C -0.087 4.087 18 C -0.101 4.101 19 C -0.009 4.009 20 C -0.069 4.069 21 N -0.160 5.160 22 N -0.050 5.050 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.146 5.146 26 C -0.133 4.133 27 C 0.066 3.934 28 F -0.120 7.120 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.007 0.993 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.629 -9.011 -30.827 32.158 hybrid contribution -0.634 0.975 0.766 1.392 sum -2.263 -8.036 -30.062 31.199 Atomic orbital electron populations 1.22400 0.94428 1.03427 1.02763 1.20329 0.94010 0.97022 0.87693 0.90295 1.60530 1.57360 1.09947 1.03143 1.21836 0.98895 0.95068 0.89718 1.21362 1.00459 0.98056 0.93081 1.18987 0.94811 0.94547 0.93077 1.21749 1.43392 0.96939 0.95687 0.92085 1.26002 0.95811 0.95790 1.02515 1.70106 1.50058 1.10714 1.26625 0.85398 0.77898 0.79083 0.78665 1.18470 1.20547 1.20391 1.20121 0.99823 0.95361 0.93147 1.20974 0.96163 0.92479 0.99094 1.21393 0.96917 1.01378 0.90366 1.16969 1.02809 0.91961 0.89115 1.23622 1.01548 0.89044 0.92692 1.76089 1.15792 1.14828 1.09266 1.78883 1.15744 1.11213 0.99115 1.47801 1.39218 1.02654 1.15324 0.64567 1.74903 1.18477 1.18822 1.02437 1.21016 0.99946 0.93862 0.98515 1.17338 1.02989 0.78508 0.94527 1.91489 1.90475 1.33051 1.96996 0.90708 0.92220 0.91444 0.82933 0.92405 0.95289 0.92621 0.92804 0.99260 0.98999 0.92861 0.82542 0.82946 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.14 71.98 0.66 -2.66 16 2 C 0.12 2.70 2.56 44.17 0.11 2.82 16 3 H 0.08 2.02 7.45 -2.39 -0.02 2.00 16 4 N -0.68 -17.17 5.25 -495.45 -2.60 -19.77 16 5 C 0.07 2.40 5.48 86.30 0.47 2.87 16 6 C -0.09 -3.66 5.41 30.59 0.17 -3.49 16 7 C 0.02 1.23 4.97 29.85 0.15 1.38 16 8 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 9 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 10 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 11 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 12 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 C -0.08 -1.72 5.07 -19.79 -0.10 -1.82 16 17 C -0.07 -1.26 9.30 22.23 0.21 -1.06 16 18 C -0.08 -1.41 9.70 22.48 0.22 -1.19 16 19 C -0.01 -0.10 5.88 -20.04 -0.12 -0.21 16 20 C 0.21 3.96 7.94 137.39 1.09 5.05 16 21 N -0.29 -5.73 12.23 -52.18 -0.64 -6.37 16 22 N -0.05 -0.86 13.47 37.02 0.50 -0.37 16 23 N -0.20 -1.98 7.90 37.02 0.29 -1.69 16 24 H 0.50 -0.12 8.96 -347.53 -3.12 -3.23 16 25 N -0.29 -4.49 12.08 -52.13 -0.63 -5.12 16 26 C -0.11 -2.10 9.68 22.52 0.22 -1.88 16 27 C 0.09 1.81 7.23 22.35 0.16 1.97 16 28 F -0.14 -3.25 16.56 44.97 0.74 -2.50 16 29 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.06 1.24 7.45 -2.38 -0.02 1.22 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.35 7.67 7.89 -89.69 -0.71 6.96 16 33 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 34 H 0.03 0.94 7.44 -2.39 -0.02 0.92 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 40 H 0.16 2.55 6.87 -2.91 -0.02 2.53 16 41 H 0.15 2.33 7.89 -2.91 -0.02 2.30 16 42 H 0.15 2.46 7.88 -2.91 -0.02 2.44 16 Total: -1.00 -70.17 363.35 1.16 -69.01 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -2.75 Total: 5.89 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 3.93 Total: -28.59 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.79 Total: -90.35 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.74 Total: -2.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.17 1.16 -69.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824584338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.001 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds