Wall clock time and date at job start Tue Mar 31 2020 12:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47097 * 2 1 4 4 C 1.52995 * 109.47334 * 119.99524 * 2 1 3 5 5 C 1.52996 * 109.47430 * 295.00063 * 4 2 1 6 6 C 1.53001 * 109.47667 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47686 * 180.02562 * 6 5 4 8 8 C 1.38230 * 120.00204 * 89.99091 * 7 6 5 9 9 C 1.38244 * 120.00000 * 179.97438 * 8 7 6 10 10 C 1.38230 * 119.99678 * 0.07609 * 9 8 7 11 11 C 1.38226 * 120.00186 * 359.90614 * 10 9 8 12 12 C 1.38231 * 119.99559 * 269.97904 * 7 6 5 13 13 C 1.50699 * 109.47043 * 239.99805 * 2 1 3 14 14 O 1.21291 * 119.99835 * 260.43798 * 13 2 1 15 15 N 1.34775 * 120.00028 * 80.44026 * 13 2 1 16 16 C 1.37099 * 119.99948 * 183.23342 * 15 13 2 17 17 H 1.08000 * 120.00044 * 223.51653 * 16 15 13 18 18 C 1.38951 * 120.00066 * 43.51767 * 16 15 13 19 19 N 1.31416 * 119.99614 * 355.56744 * 18 16 15 20 20 Si 1.86798 * 120.00238 * 175.57036 * 18 16 15 21 21 H 1.48504 * 109.47026 * 89.99872 * 20 18 16 22 22 H 1.48500 * 109.47367 * 209.99496 * 20 18 16 23 23 H 1.48496 * 109.47022 * 330.00066 * 20 18 16 24 24 C 1.46494 * 119.99907 * 3.23750 * 15 13 2 25 25 C 1.50696 * 109.47381 * 86.13500 * 24 15 13 26 26 O 1.20822 * 120.00353 * 359.97438 * 25 24 15 27 27 O 1.34233 * 119.99871 * 179.97438 * 25 24 15 28 28 H 1.08991 * 109.47167 * 66.70014 * 1 2 3 29 29 H 1.09003 * 109.46874 * 186.69832 * 1 2 3 30 30 H 1.09002 * 109.46767 * 306.69518 * 1 2 3 31 31 H 1.09005 * 109.47541 * 174.99807 * 4 2 1 32 32 H 1.09004 * 109.47583 * 55.00223 * 4 2 1 33 33 H 1.09004 * 109.47478 * 59.99965 * 5 4 2 34 34 H 1.09001 * 109.47436 * 300.00130 * 5 4 2 35 35 H 1.08993 * 109.47277 * 59.99348 * 6 5 4 36 36 H 1.09009 * 109.46685 * 299.99784 * 6 5 4 37 37 H 1.08000 * 120.00566 * 359.71070 * 8 7 6 38 38 H 1.07998 * 119.99995 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99764 * 179.97438 * 10 9 8 40 40 H 1.08002 * 119.99988 * 180.02562 * 11 10 9 41 41 H 1.07992 * 120.00603 * 359.97438 * 12 7 6 42 42 H 0.97002 * 119.99584 * 184.46723 * 19 18 16 43 43 H 1.09005 * 109.46666 * 206.13493 * 24 15 13 44 44 H 1.09002 * 109.47403 * 326.12805 * 24 15 13 45 45 H 0.96705 * 117.00015 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6353 0.0691 2.4953 6 6 2.1459 -0.6517 3.7446 7 6 1.7468 0.1263 4.9719 8 6 0.5412 -0.1365 5.5951 9 6 0.1753 0.5769 6.7213 10 6 1.0143 1.5540 7.2233 11 6 2.2200 1.8165 6.6004 12 6 2.5864 1.1025 5.4747 13 6 2.0323 -0.7104 -1.2304 14 8 2.3990 -1.8643 -1.1573 15 7 2.0742 -0.0637 -2.4121 16 6 2.4682 -0.7291 -3.5442 17 1 3.1463 -0.2570 -4.2396 18 6 1.9951 -2.0110 -3.7968 19 7 1.2401 -2.6193 -2.9097 20 14 2.4322 -2.8694 -5.3972 21 1 3.6908 -3.6373 -5.2193 22 1 1.3362 -3.7967 -5.7770 23 1 2.6172 -1.8569 -6.4675 24 6 1.6987 1.3504 -2.4869 25 6 2.8975 2.2060 -2.1680 26 8 3.9568 1.6878 -1.9048 27 8 2.7886 3.5439 -2.1764 28 1 -0.3633 0.4065 -0.9438 29 1 -0.3633 -1.0207 0.1199 30 1 -0.3633 0.6141 0.8240 31 1 3.1264 -0.7994 1.2056 32 1 1.6055 -1.7197 1.2953 33 1 0.5490 0.1473 2.5390 34 1 2.0699 1.0677 2.4493 35 1 3.2322 -0.7296 3.7007 36 1 1.7116 -1.6505 3.7908 37 1 -0.1169 -0.8961 5.1997 38 1 -0.7668 0.3719 7.2079 39 1 0.7283 2.1116 8.1029 40 1 2.8758 2.5796 6.9929 41 1 3.5285 1.3074 4.9883 42 1 0.9634 -3.5374 -3.0564 43 1 1.3456 1.5798 -3.4923 44 1 0.9052 1.5542 -1.7679 45 1 3.5847 4.0505 -1.9651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:44 Heat of formation + Delta-G solvation = -119.549366 kcal Electronic energy + Delta-G solvation = -26906.379076 eV Core-core repulsion = 23081.130733 eV Total energy + Delta-G solvation = -3825.248343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38998 -40.26634 -39.97025 -37.17679 -36.86567 -35.79026 -34.41215 -33.43214 -31.71711 -30.67868 -29.22026 -27.19847 -26.89050 -24.64720 -23.40182 -22.99335 -22.23005 -21.58743 -20.32656 -19.02819 -18.47584 -17.73852 -17.57048 -17.21596 -16.97303 -16.54791 -16.28667 -16.03903 -15.77330 -15.61256 -15.08146 -14.62105 -14.44980 -14.22244 -14.12960 -13.85057 -13.63420 -13.40293 -13.27766 -13.06733 -12.97360 -12.83478 -12.72809 -12.48648 -12.45482 -12.34546 -12.08907 -11.99111 -11.77681 -11.74116 -11.63826 -11.53496 -11.38318 -10.84757 -9.83271 -9.77332 -9.53167 -9.17346 -7.97151 -6.00975 0.50171 0.54704 1.31485 1.41225 1.44478 1.53172 2.03637 2.35732 2.79398 2.91853 3.15885 3.23272 3.79080 3.91071 3.97905 4.07674 4.13909 4.22333 4.25865 4.34059 4.37726 4.45667 4.54058 4.60127 4.62984 4.67914 4.69790 4.76623 4.84044 4.91063 4.99572 5.07380 5.14982 5.18998 5.26440 5.28163 5.46772 5.49495 5.52002 5.63320 5.67132 5.69591 5.80913 6.18354 6.20916 7.05249 7.10874 7.23256 7.68570 8.47020 8.93968 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.003100 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.355545 B = 9031.494539 C =10092.955770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.086 4.086 5 C -0.096 4.096 6 C -0.080 4.080 7 C -0.088 4.088 8 C -0.132 4.132 9 C -0.125 4.125 10 C -0.134 4.134 11 C -0.126 4.126 12 C -0.134 4.134 13 C 0.467 3.533 14 O -0.551 6.551 15 N -0.467 5.467 16 C -0.353 4.353 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.844 5.844 20 Si 0.977 3.023 21 H -0.292 1.292 22 H -0.280 1.280 23 H -0.254 1.254 24 C 0.110 3.890 25 C 0.462 3.538 26 O -0.548 6.548 27 O -0.506 6.506 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.253 0.747 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 13.050 15.264 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.098 0.902 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.117 4.117 7 C -0.088 4.088 8 C -0.149 4.149 9 C -0.143 4.143 10 C -0.152 4.152 11 C -0.143 4.143 12 C -0.152 4.152 13 C 0.256 3.744 14 O -0.428 6.428 15 N -0.190 5.190 16 C -0.481 4.481 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.480 5.480 20 Si 0.802 3.198 21 H -0.219 1.219 22 H -0.205 1.205 23 H -0.178 1.178 24 C -0.016 4.016 25 C 0.303 3.697 26 O -0.437 6.437 27 O -0.319 6.319 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.142 0.858 42 H 0.062 0.938 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -4.401 11.939 15.294 19.895 hybrid contribution 1.215 -0.590 -0.895 1.620 sum -3.187 11.349 14.399 18.609 Atomic orbital electron populations 1.21689 0.92042 1.02041 1.02650 1.21237 0.98356 0.99239 0.93320 0.90215 1.21237 0.99322 0.98786 0.93082 1.21489 1.01750 0.98507 0.91547 1.20586 1.01233 0.98432 0.91487 1.20004 0.95208 0.97062 0.96537 1.21289 0.96337 1.00747 0.96574 1.21444 1.00494 0.96106 0.96229 1.21462 0.94534 0.98360 1.00802 1.21429 0.97409 0.99856 0.95652 1.21275 1.00087 0.96507 0.97304 1.20818 0.81995 0.87373 0.84212 1.90487 1.48962 1.19125 1.84184 1.43280 1.62053 1.06871 1.06792 1.19237 1.27469 1.01199 1.00225 0.91104 1.26184 0.96034 0.98609 1.00221 1.70299 1.33054 1.11210 1.33453 0.85190 0.77007 0.78351 0.79222 1.21881 1.20513 1.17803 1.21312 0.92044 0.81741 1.06551 1.24840 0.91154 0.81701 0.71984 1.90718 1.31908 1.75076 1.46020 1.84511 1.45952 1.18771 1.82641 0.92453 0.93999 0.88995 0.94511 0.93204 0.90480 0.91606 0.91476 0.91078 0.85482 0.84209 0.84009 0.84326 0.85805 0.93751 0.85356 0.85246 0.71718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.44 71.98 0.61 -3.52 16 2 C -0.10 -3.84 1.88 -11.54 -0.02 -3.86 16 3 H 0.08 2.78 6.56 -2.39 -0.02 2.76 16 4 C -0.09 -3.13 4.07 30.59 0.12 -3.01 16 5 C -0.10 -2.52 4.95 30.59 0.15 -2.37 16 6 C -0.08 -1.96 5.34 29.85 0.16 -1.80 16 7 C -0.09 -1.97 5.13 -19.87 -0.10 -2.08 16 8 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 9 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 10 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 11 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 12 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 13 C 0.47 24.34 5.91 87.66 0.52 24.85 16 14 O -0.55 -34.50 13.09 -3.06 -0.04 -34.54 16 15 N -0.47 -23.53 2.10 -639.61 -1.34 -24.87 16 16 C -0.35 -19.93 9.24 84.04 0.78 -19.16 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C 0.00 -0.24 5.06 84.93 0.43 0.19 16 19 N -0.84 -51.29 10.20 21.66 0.22 -51.07 16 20 Si 0.98 45.45 29.56 68.60 2.03 47.47 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.11 4.02 5.58 85.63 0.48 4.50 16 25 C 0.46 16.14 7.71 71.23 0.55 16.69 16 26 O -0.55 -24.46 17.11 21.98 0.38 -24.09 16 27 O -0.51 -12.17 13.42 -51.45 -0.69 -12.86 16 28 H 0.06 1.84 6.69 -2.39 -0.02 1.82 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 2.23 6.90 -2.39 -0.02 2.21 16 31 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 2.00 8.05 -2.38 -0.02 1.98 16 33 H 0.08 1.85 6.72 -2.38 -0.02 1.84 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 36 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 37 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.13 4.25 8.01 -2.38 -0.02 4.23 16 44 H 0.13 3.92 5.13 -2.39 -0.01 3.91 16 45 H 0.42 6.43 9.10 -74.05 -0.67 5.76 16 Total: -1.00 -81.13 373.85 5.65 -75.48 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.32 Total: 24.87 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.77 Total: -0.39 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.12 Total: -75.94 kcal Atomic # 8 Polarization: -71.13 SS G_CDS: -0.35 Total: -71.49 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -81.13 5.65 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.067 kcal (2) G-P(sol) polarization free energy of solvation -81.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds