Wall clock time and date at job start Tue Mar 31 2020 12:47:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42901 * 113.99775 * 2 1
4 4 H 1.09002 * 109.47028 * 22.21208 * 3 2 1
5 5 C 1.53003 * 109.47094 * 262.21005 * 3 2 1
6 6 H 1.09003 * 109.47015 * 179.23746 * 5 3 2
7 7 C 1.52998 * 109.47026 * 59.24168 * 5 3 2
8 8 N 1.46492 * 109.47134 * 299.23824 * 5 3 2
9 9 C 1.34778 * 119.99696 * 204.99844 * 8 5 3
10 10 O 1.21592 * 120.00473 * 0.02562 * 9 8 5
11 11 C 1.47538 * 119.99618 * 179.97438 * 9 8 5
12 12 C 1.39665 * 120.20172 * 0.02562 * 11 9 8
13 13 C 1.37826 * 119.92442 * 180.02562 * 12 11 9
14 14 C 1.38568 * 120.32215 * 359.97438 * 13 12 11
15 15 C 1.38031 * 120.40032 * 0.02562 * 14 13 12
16 16 C 1.38837 * 120.07235 * 359.68333 * 15 14 13
17 17 O 1.35515 * 120.16209 * 180.30108 * 16 15 14
18 18 C 1.34821 * 117.00076 * 5.70932 * 17 16 15
19 19 H 1.07996 * 119.99813 * 5.04297 * 18 17 16
20 20 C 1.38695 * 119.99993 * 185.03672 * 18 17 16
21 21 N 1.31527 * 119.99999 * 0.02562 * 20 18 17
22 22 Si 1.86804 * 120.00046 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47236 * 59.99824 * 22 20 18
24 24 H 1.48500 * 109.47182 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.46641 * 299.99972 * 22 20 18
26 26 C 1.52994 * 109.47185 * 142.21145 * 3 2 1
27 27 C 1.53004 * 117.50066 * 300.00030 * 26 3 2
28 28 C 1.52998 * 60.03254 * 252.49846 * 27 26 3
29 29 H 1.09005 * 109.46842 * 305.01929 * 1 2 3
30 30 H 1.08994 * 109.47574 * 65.02527 * 1 2 3
31 31 H 1.09003 * 109.46759 * 185.02956 * 1 2 3
32 32 H 1.09003 * 109.47388 * 173.95426 * 7 5 3
33 33 H 1.09007 * 109.47040 * 293.95326 * 7 5 3
34 34 H 1.08993 * 109.47565 * 53.94942 * 7 5 3
35 35 H 0.97002 * 120.00330 * 25.00028 * 8 5 3
36 36 H 1.08007 * 120.03446 * 0.02562 * 12 11 9
37 37 H 1.08000 * 119.84037 * 179.97438 * 13 12 11
38 38 H 1.08000 * 119.80309 * 180.02562 * 14 13 12
39 39 H 1.08001 * 119.96176 * 179.97438 * 15 14 13
40 40 H 0.96998 * 119.99318 * 180.02562 * 21 20 18
41 41 H 1.09002 * 115.55128 * 85.67256 * 26 3 2
42 42 H 1.09000 * 117.49574 * 359.97438 * 27 26 3
43 43 H 1.09000 * 117.49961 * 144.99489 * 27 26 3
44 44 H 1.09008 * 117.50133 * 107.49923 * 28 27 26
45 45 H 1.09002 * 117.50037 * 252.51930 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.2888 2.0244 0.3885
5 6 2.3962 1.6919 -1.4292
6 1 2.8271 2.6931 -1.4311
7 6 1.1505 1.6712 -2.3172
8 7 3.3795 0.7361 -1.9448
9 6 4.2291 1.1055 -2.9236
10 8 4.1800 2.2320 -3.3785
11 6 5.2198 0.1431 -3.4425
12 6 5.2803 -1.1519 -2.9228
13 6 6.2083 -2.0461 -3.4113
14 6 7.0827 -1.6673 -4.4173
15 6 7.0346 -0.3910 -4.9406
16 6 6.1024 0.5213 -4.4650
17 8 6.0495 1.7729 -4.9817
18 6 6.8484 2.0342 -6.0358
19 1 7.4307 1.2414 -6.4816
20 6 6.9224 3.3211 -6.5477
21 7 6.2135 4.2867 -6.0045
22 14 8.0288 3.6830 -8.0087
23 1 7.6024 2.8595 -9.1685
24 1 7.9299 5.1225 -8.3600
25 1 9.4341 3.3548 -7.6585
26 6 3.2590 1.3078 0.8838
27 6 3.0809 0.9446 2.3594
28 6 3.3633 2.3936 1.9578
29 1 -0.3633 0.5898 0.8417
30 1 -0.3634 0.4339 -0.9315
31 1 -0.3633 -1.0238 0.0901
32 1 1.4040 2.0490 -3.3077
33 1 0.7815 0.6490 -2.4018
34 1 0.3784 2.3007 -1.8749
35 1 3.4190 -0.1625 -1.5817
36 1 4.6006 -1.4521 -2.1389
37 1 6.2542 -3.0470 -3.0081
38 1 7.8063 -2.3750 -4.7942
39 1 7.7198 -0.1031 -5.7243
40 1 6.2650 5.1866 -6.3628
41 1 4.1811 0.9923 0.3957
42 1 2.0739 0.7044 2.7006
43 1 3.8857 0.3900 2.8420
44 1 2.5421 3.1064 2.0346
45 1 4.3541 2.7924 2.1757
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000837005865.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:42
Heat of formation + Delta-G solvation = -50.953395 kcal
Electronic energy + Delta-G solvation = -27341.964683 eV
Core-core repulsion = 23519.690885 eV
Total energy + Delta-G solvation = -3822.273798 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-39.90805 -39.09988 -37.73345 -36.37008 -36.27920 -34.38462 -32.30614 -31.32512
-29.46164 -28.85211 -28.21174 -25.59542 -25.34515 -23.35004 -22.46058 -21.78603
-21.13171 -20.44936 -19.72538 -17.99734 -17.68970 -16.80317 -16.30320 -15.93428
-15.40987 -15.12322 -14.76635 -14.56725 -14.22122 -14.17572 -14.03269 -13.73757
-13.50704 -13.25711 -12.71000 -12.69283 -12.45987 -12.23282 -11.93243 -11.81869
-11.67890 -11.67105 -11.30882 -11.21212 -11.09201 -11.04535 -10.84192 -10.73848
-10.46169 -10.44607 -10.23200 -9.54834 -9.53424 -8.84855 -8.76216 -8.44114
-8.20815 -7.26094 -6.41326 -4.00933 1.77783 2.37382 3.13627 3.15606
3.17871 3.28663 3.81031 3.82482 3.96261 4.03475 4.48743 4.67563
4.73499 4.90704 5.01522 5.09389 5.15046 5.16579 5.19398 5.28480
5.32616 5.50510 5.51665 5.54351 5.56540 5.58602 5.69440 5.76529
5.81399 5.85735 6.00495 6.06525 6.16568 6.18513 6.24332 6.45392
6.62041 6.75154 6.96190 6.97256 7.11558 7.19389 7.29291 7.32761
7.74812 7.96022 8.27109 8.98583 9.20125 9.71929 10.72636
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.014679 B = 0.003657 C = 0.003301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.036137 B = 7655.395141 C = 8479.529959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.375 6.375
3 C 0.114 3.886
4 H 0.072 0.928
5 C 0.134 3.866
6 H 0.094 0.906
7 C -0.167 4.167
8 N -0.730 5.730
9 C 0.554 3.446
10 O -0.504 6.504
11 C -0.226 4.226
12 C -0.038 4.038
13 C -0.231 4.231
14 C -0.052 4.052
15 C -0.239 4.239
16 C 0.189 3.811
17 O -0.124 6.124
18 C -0.404 4.404
19 H 0.092 0.908
20 C 0.045 3.955
21 N -0.834 5.834
22 Si 0.940 3.060
23 H -0.269 1.269
24 H -0.277 1.277
25 H -0.269 1.269
26 C -0.154 4.154
27 C -0.167 4.167
28 C -0.174 4.174
29 H 0.038 0.962
30 H 0.049 0.951
31 H 0.083 0.917
32 H 0.068 0.932
33 H 0.060 0.940
34 H 0.055 0.945
35 H 0.396 0.604
36 H 0.113 0.887
37 H 0.109 0.891
38 H 0.109 0.891
39 H 0.131 0.869
40 H 0.271 0.729
41 H 0.115 0.885
42 H 0.092 0.908
43 H 0.094 0.906
44 H 0.093 0.907
45 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.314 -8.067 12.836 17.291
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.294 6.294
3 C 0.056 3.944
4 H 0.090 0.910
5 C 0.029 3.971
6 H 0.112 0.888
7 C -0.225 4.225
8 N -0.385 5.385
9 C 0.344 3.656
10 O -0.379 6.379
11 C -0.231 4.231
12 C -0.056 4.056
13 C -0.250 4.250
14 C -0.070 4.070
15 C -0.258 4.258
16 C 0.130 3.870
17 O -0.022 6.022
18 C -0.479 4.479
19 H 0.110 0.890
20 C -0.163 4.163
21 N -0.465 5.465
22 Si 0.764 3.236
23 H -0.194 1.194
24 H -0.202 1.202
25 H -0.194 1.194
26 C -0.173 4.173
27 C -0.204 4.204
28 C -0.211 4.211
29 H 0.056 0.944
30 H 0.067 0.933
31 H 0.101 0.899
32 H 0.087 0.913
33 H 0.079 0.921
34 H 0.074 0.926
35 H 0.232 0.768
36 H 0.131 0.869
37 H 0.127 0.873
38 H 0.127 0.873
39 H 0.148 0.852
40 H 0.081 0.919
41 H 0.133 0.867
42 H 0.110 0.890
43 H 0.112 0.888
44 H 0.111 0.889
45 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -8.424 -6.858 12.499 16.560
hybrid contribution 0.438 -0.194 -0.594 0.763
sum -7.986 -7.052 11.906 15.977
Atomic orbital electron populations
1.22967 0.81366 1.02570 1.00306 1.87897 1.19285 1.27329 1.94889
1.22012 0.93378 0.85138 0.93896 0.91042 1.21195 0.89621 0.94947
0.91365 0.88782 1.22282 0.97035 1.01762 1.01412 1.45809 1.36367
1.15894 1.40477 1.18242 0.80491 0.87699 0.79181 1.90932 1.70004
1.19986 1.56943 1.18875 1.03671 0.95408 1.05119 1.20796 0.96387
0.91690 0.96768 1.20461 1.01594 0.99643 1.03295 1.20891 0.96552
0.95025 0.94555 1.21156 1.03617 0.94682 1.06371 1.19299 0.91245
0.86303 0.90197 1.84195 1.54637 1.22416 1.40946 1.21437 1.24388
0.95824 1.06293 0.89025 1.25362 0.97496 0.94395 0.99002 1.70122
1.36252 1.01345 1.38829 0.85814 0.79661 0.78071 0.80068 1.19391
1.20186 1.19405 1.22375 0.99507 1.04855 0.90521 1.22808 1.02715
0.97817 0.97098 1.23025 1.03299 0.91963 1.02819 0.94382 0.93270
0.89862 0.91342 0.92061 0.92601 0.76814 0.86938 0.87329 0.87264
0.85156 0.91882 0.86666 0.88983 0.88766 0.88851 0.88369
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.21 10.39 101.05 1.05 1.26 16
2 O -0.38 -4.24 9.50 -35.23 -0.33 -4.57 16
3 C 0.11 1.32 2.24 -26.73 -0.06 1.26 16
4 H 0.07 0.72 7.39 -51.93 -0.38 0.33 16
5 C 0.13 1.99 2.42 -67.93 -0.16 1.82 16
6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16
7 C -0.17 -2.31 8.08 37.16 0.30 -2.01 16
8 N -0.73 -12.22 4.14 -54.85 -0.23 -12.44 16
9 C 0.55 12.32 7.73 -12.47 -0.10 12.22 16
10 O -0.50 -13.79 14.83 -16.57 -0.25 -14.03 16
11 C -0.23 -5.01 5.89 -104.81 -0.62 -5.63 16
12 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16
13 C -0.23 -3.91 10.02 -39.61 -0.40 -4.31 16
14 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16
15 C -0.24 -5.23 9.13 -39.44 -0.36 -5.59 16
16 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16
17 O -0.12 -3.69 7.84 -21.06 -0.17 -3.86 16
18 C -0.40 -11.55 9.45 30.90 0.29 -11.25 16
19 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16
20 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16
21 N -0.83 -25.29 13.67 55.48 0.76 -24.54 16
22 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16
23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
26 C -0.15 -1.79 5.26 -90.58 -0.48 -2.27 16
27 C -0.17 -1.61 10.15 -26.73 -0.27 -1.89 16
28 C -0.17 -1.74 10.18 -26.69 -0.27 -2.02 16
29 H 0.04 0.27 7.99 -51.93 -0.41 -0.14 16
30 H 0.05 0.42 5.60 -51.93 -0.29 0.13 16
31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
33 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16
34 H 0.06 0.63 7.99 -51.93 -0.41 0.21 16
35 H 0.40 5.84 6.26 -40.82 -0.26 5.59 16
36 H 0.11 1.62 6.40 -52.48 -0.34 1.29 16
37 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16
39 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16
40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
41 H 0.12 1.55 7.47 -51.93 -0.39 1.16 16
42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
44 H 0.09 0.84 8.05 -51.92 -0.42 0.42 16
45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16
LS Contribution 370.94 15.07 5.59 5.59
Total: -1.00 -34.27 370.94 -8.15 -42.42
By element:
Atomic # 1 Polarization: 17.16 SS G_CDS: -6.31 Total: 10.85 kcal
Atomic # 6 Polarization: -12.90 SS G_CDS: -2.20 Total: -15.10 kcal
Atomic # 7 Polarization: -37.51 SS G_CDS: 0.53 Total: -36.98 kcal
Atomic # 8 Polarization: -21.71 SS G_CDS: -0.75 Total: -22.46 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -34.27 -8.15 -42.42 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000837005865.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.534 kcal
(2) G-P(sol) polarization free energy of solvation -34.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.953 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds