Wall clock time and date at job start Tue Mar 31 2020 12:47:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42901 * 113.99775 * 2 1
4 4 H 1.09002 * 109.47028 * 22.21208 * 3 2 1
5 5 C 1.53003 * 109.47094 * 262.21005 * 3 2 1
6 6 H 1.09003 * 109.47015 * 179.23746 * 5 3 2
7 7 C 1.52998 * 109.47026 * 59.24168 * 5 3 2
8 8 N 1.46492 * 109.47134 * 299.23824 * 5 3 2
9 9 C 1.34778 * 119.99696 * 204.99844 * 8 5 3
10 10 O 1.21592 * 120.00473 * 0.02562 * 9 8 5
11 11 C 1.47538 * 119.99618 * 179.97438 * 9 8 5
12 12 C 1.39665 * 120.20172 * 0.02562 * 11 9 8
13 13 C 1.37826 * 119.92442 * 180.02562 * 12 11 9
14 14 C 1.38568 * 120.32215 * 359.97438 * 13 12 11
15 15 C 1.38031 * 120.40032 * 0.02562 * 14 13 12
16 16 C 1.38837 * 120.07235 * 359.68333 * 15 14 13
17 17 O 1.35515 * 120.16209 * 180.30108 * 16 15 14
18 18 C 1.34821 * 117.00076 * 5.70932 * 17 16 15
19 19 H 1.07996 * 119.99813 * 5.04297 * 18 17 16
20 20 C 1.38695 * 119.99993 * 185.03672 * 18 17 16
21 21 N 1.31527 * 119.99999 * 0.02562 * 20 18 17
22 22 Si 1.86804 * 120.00046 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47236 * 59.99824 * 22 20 18
24 24 H 1.48500 * 109.47182 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.46641 * 299.99972 * 22 20 18
26 26 C 1.52994 * 109.47185 * 142.21145 * 3 2 1
27 27 C 1.53004 * 117.50066 * 300.00030 * 26 3 2
28 28 C 1.52998 * 60.03254 * 252.49846 * 27 26 3
29 29 H 1.09005 * 109.46842 * 305.01929 * 1 2 3
30 30 H 1.08994 * 109.47574 * 65.02527 * 1 2 3
31 31 H 1.09003 * 109.46759 * 185.02956 * 1 2 3
32 32 H 1.09003 * 109.47388 * 173.95426 * 7 5 3
33 33 H 1.09007 * 109.47040 * 293.95326 * 7 5 3
34 34 H 1.08993 * 109.47565 * 53.94942 * 7 5 3
35 35 H 0.97002 * 120.00330 * 25.00028 * 8 5 3
36 36 H 1.08007 * 120.03446 * 0.02562 * 12 11 9
37 37 H 1.08000 * 119.84037 * 179.97438 * 13 12 11
38 38 H 1.08000 * 119.80309 * 180.02562 * 14 13 12
39 39 H 1.08001 * 119.96176 * 179.97438 * 15 14 13
40 40 H 0.96998 * 119.99318 * 180.02562 * 21 20 18
41 41 H 1.09002 * 115.55128 * 85.67256 * 26 3 2
42 42 H 1.09000 * 117.49574 * 359.97438 * 27 26 3
43 43 H 1.09000 * 117.49961 * 144.99489 * 27 26 3
44 44 H 1.09008 * 117.50133 * 107.49923 * 28 27 26
45 45 H 1.09002 * 117.50037 * 252.51930 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.2888 2.0244 0.3885
5 6 2.3962 1.6919 -1.4292
6 1 2.8271 2.6931 -1.4311
7 6 1.1505 1.6712 -2.3172
8 7 3.3795 0.7361 -1.9448
9 6 4.2291 1.1055 -2.9236
10 8 4.1800 2.2320 -3.3785
11 6 5.2198 0.1431 -3.4425
12 6 5.2803 -1.1519 -2.9228
13 6 6.2083 -2.0461 -3.4113
14 6 7.0827 -1.6673 -4.4173
15 6 7.0346 -0.3910 -4.9406
16 6 6.1024 0.5213 -4.4650
17 8 6.0495 1.7729 -4.9817
18 6 6.8484 2.0342 -6.0358
19 1 7.4307 1.2414 -6.4816
20 6 6.9224 3.3211 -6.5477
21 7 6.2135 4.2867 -6.0045
22 14 8.0288 3.6830 -8.0087
23 1 7.6024 2.8595 -9.1685
24 1 7.9299 5.1225 -8.3600
25 1 9.4341 3.3548 -7.6585
26 6 3.2590 1.3078 0.8838
27 6 3.0809 0.9446 2.3594
28 6 3.3633 2.3936 1.9578
29 1 -0.3633 0.5898 0.8417
30 1 -0.3634 0.4339 -0.9315
31 1 -0.3633 -1.0238 0.0901
32 1 1.4040 2.0490 -3.3077
33 1 0.7815 0.6490 -2.4018
34 1 0.3784 2.3007 -1.8749
35 1 3.4190 -0.1625 -1.5817
36 1 4.6006 -1.4521 -2.1389
37 1 6.2542 -3.0470 -3.0081
38 1 7.8063 -2.3750 -4.7942
39 1 7.7198 -0.1031 -5.7243
40 1 6.2650 5.1866 -6.3628
41 1 4.1811 0.9923 0.3957
42 1 2.0739 0.7044 2.7006
43 1 3.8857 0.3900 2.8420
44 1 2.5421 3.1064 2.0346
45 1 4.3541 2.7924 2.1757
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000837005865.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:41
Heat of formation + Delta-G solvation = -73.625065 kcal
Electronic energy + Delta-G solvation = -27342.947800 eV
Core-core repulsion = 23519.690885 eV
Total energy + Delta-G solvation = -3823.256916 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.40868 -40.46741 -39.30211 -38.01484 -37.18412 -35.82903 -34.32121 -32.86248
-30.92755 -30.54984 -29.07597 -27.36676 -26.40445 -24.92144 -23.38639 -23.20117
-22.44319 -21.63205 -21.19184 -19.83604 -19.34185 -18.05921 -17.71801 -17.13388
-16.51875 -16.37506 -16.16844 -16.04830 -15.83010 -15.69880 -15.42733 -15.29798
-15.07749 -14.44869 -14.24472 -14.15322 -13.88812 -13.54178 -13.46206 -12.99665
-12.95495 -12.80539 -12.68778 -12.49453 -12.42595 -12.34535 -12.14861 -12.11417
-12.05980 -11.44225 -11.29112 -11.05554 -10.82141 -10.61533 -10.43614 -10.02057
-9.75963 -9.03122 -8.44272 -6.15056 0.13671 0.73133 1.31995 1.45123
1.49915 2.13048 2.16194 2.22688 2.63955 2.88267 3.13615 3.24442
3.46159 3.56731 3.77822 3.99550 4.05449 4.09867 4.11484 4.19826
4.29288 4.31474 4.38214 4.51369 4.53460 4.58384 4.64070 4.68470
4.78975 4.81212 4.90812 4.92925 5.00248 5.03242 5.07464 5.14951
5.23146 5.26894 5.28032 5.49065 5.61572 5.62983 5.69566 5.96380
6.17256 6.25930 6.75852 6.94967 7.54034 7.81147 8.76200
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.014679 B = 0.003657 C = 0.003301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.036137 B = 7655.395141 C = 8479.529959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.385 6.385
3 C 0.130 3.870
4 H 0.094 0.906
5 C 0.128 3.872
6 H 0.062 0.938
7 C -0.159 4.159
8 N -0.704 5.704
9 C 0.549 3.451
10 O -0.569 6.569
11 C -0.245 4.245
12 C -0.031 4.031
13 C -0.201 4.201
14 C -0.040 4.040
15 C -0.257 4.257
16 C 0.149 3.851
17 O -0.187 6.187
18 C -0.429 4.429
19 H 0.105 0.895
20 C -0.021 4.021
21 N -0.905 5.905
22 Si 1.022 2.978
23 H -0.255 1.255
24 H -0.273 1.273
25 H -0.253 1.253
26 C -0.178 4.178
27 C -0.147 4.147
28 C -0.176 4.176
29 H 0.055 0.945
30 H 0.048 0.952
31 H 0.098 0.902
32 H 0.025 0.975
33 H 0.075 0.925
34 H 0.086 0.914
35 H 0.410 0.590
36 H 0.154 0.846
37 H 0.163 0.837
38 H 0.154 0.846
39 H 0.124 0.876
40 H 0.271 0.729
41 H 0.091 0.909
42 H 0.106 0.894
43 H 0.100 0.900
44 H 0.106 0.894
45 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.671 -12.182 14.807 21.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.304 6.304
3 C 0.072 3.928
4 H 0.112 0.888
5 C 0.022 3.978
6 H 0.080 0.920
7 C -0.217 4.217
8 N -0.359 5.359
9 C 0.339 3.661
10 O -0.448 6.448
11 C -0.249 4.249
12 C -0.049 4.049
13 C -0.219 4.219
14 C -0.058 4.058
15 C -0.277 4.277
16 C 0.094 3.906
17 O -0.090 6.090
18 C -0.505 4.505
19 H 0.123 0.877
20 C -0.220 4.220
21 N -0.541 5.541
22 Si 0.840 3.160
23 H -0.179 1.179
24 H -0.197 1.197
25 H -0.177 1.177
26 C -0.196 4.196
27 C -0.184 4.184
28 C -0.213 4.213
29 H 0.074 0.926
30 H 0.066 0.934
31 H 0.117 0.883
32 H 0.044 0.956
33 H 0.094 0.906
34 H 0.105 0.895
35 H 0.248 0.752
36 H 0.171 0.829
37 H 0.180 0.820
38 H 0.172 0.828
39 H 0.141 0.859
40 H 0.080 0.920
41 H 0.109 0.891
42 H 0.125 0.875
43 H 0.119 0.881
44 H 0.124 0.876
45 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -8.804 -11.088 14.535 20.291
hybrid contribution 0.441 0.665 -0.927 1.223
sum -8.363 -10.423 13.608 19.072
Atomic orbital electron populations
1.23182 0.79767 1.04013 1.01039 1.87885 1.21035 1.26700 1.94766
1.21781 0.93967 0.86107 0.90952 0.88824 1.21398 0.89092 0.93130
0.94149 0.91990 1.22217 0.97352 1.03008 0.99108 1.45581 1.35185
1.16700 1.38383 1.18510 0.81056 0.86925 0.79640 1.90911 1.71870
1.22648 1.59360 1.19325 1.03304 0.97393 1.04917 1.21265 0.97106
0.89592 0.96946 1.21155 0.98647 1.01301 1.00803 1.21424 0.96973
0.93713 0.93717 1.21308 1.03264 0.96120 1.06980 1.20081 0.93004
0.85992 0.91544 1.84192 1.57071 1.24948 1.42766 1.21992 1.24666
0.96739 1.07092 0.87734 1.26746 0.99104 0.93760 1.02405 1.70320
1.39907 1.01895 1.41960 0.84634 0.77664 0.78007 0.75720 1.17940
1.19729 1.17710 1.22295 0.98587 1.07047 0.91693 1.22870 1.03716
0.97052 0.94742 1.23125 1.03729 0.92618 1.01797 0.92616 0.93382
0.88334 0.95551 0.90627 0.89520 0.75248 0.82895 0.81960 0.82795
0.85873 0.92042 0.89080 0.87547 0.88130 0.87556 0.88765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.21 10.39 113.37 1.18 1.39 16
2 O -0.39 -7.53 9.50 -148.98 -1.41 -8.94 16
3 C 0.13 2.80 2.24 30.59 0.07 2.87 16
4 H 0.09 1.63 7.39 -2.39 -0.02 1.61 16
5 C 0.13 3.86 2.42 44.99 0.11 3.97 16
6 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16
7 C -0.16 -4.47 8.08 71.98 0.58 -3.89 16
8 N -0.70 -23.97 4.14 -445.70 -1.84 -25.81 16
9 C 0.55 25.83 7.73 86.70 0.67 26.50 16
10 O -0.57 -34.17 14.83 16.89 0.25 -33.92 16
11 C -0.24 -11.08 5.89 -19.99 -0.12 -11.20 16
12 C -0.03 -0.99 9.53 22.52 0.21 -0.78 16
13 C -0.20 -5.70 10.02 22.25 0.22 -5.48 16
14 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16
15 C -0.26 -11.32 9.13 22.36 0.20 -11.12 16
16 C 0.15 7.90 6.66 22.91 0.15 8.05 16
17 O -0.19 -12.16 7.84 0.82 0.01 -12.15 16
18 C -0.43 -26.40 9.45 67.93 0.64 -25.76 16
19 H 0.11 5.77 5.29 -2.91 -0.02 5.76 16
20 C -0.02 -1.26 5.49 84.85 0.47 -0.79 16
21 N -0.91 -59.81 13.67 21.62 0.30 -59.51 16
22 Si 1.02 44.74 29.55 68.60 2.03 46.77 16
23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16
25 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16
26 C -0.18 -3.92 5.26 -10.77 -0.06 -3.98 16
27 C -0.15 -2.44 10.15 30.59 0.31 -2.13 16
28 C -0.18 -3.28 10.18 30.62 0.31 -2.97 16
29 H 0.06 0.58 7.99 -2.38 -0.02 0.56 16
30 H 0.05 0.67 5.60 -2.39 -0.01 0.65 16
31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
33 H 0.07 1.88 6.56 -2.38 -0.02 1.87 16
34 H 0.09 1.87 7.99 -2.39 -0.02 1.85 16
35 H 0.41 11.47 6.26 -92.71 -0.58 10.89 16
36 H 0.15 3.68 6.40 -2.91 -0.02 3.66 16
37 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16
38 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16
39 H 0.12 5.47 5.71 -2.91 -0.02 5.45 16
40 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16
41 H 0.09 2.44 7.47 -2.39 -0.02 2.42 16
42 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16
43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
44 H 0.11 1.70 8.05 -2.38 -0.02 1.68 16
45 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16
Total: -1.00 -87.18 370.94 4.94 -82.24
By element:
Atomic # 1 Polarization: 37.26 SS G_CDS: 0.44 Total: 37.70 kcal
Atomic # 6 Polarization: -31.56 SS G_CDS: 5.18 Total: -26.38 kcal
Atomic # 7 Polarization: -83.77 SS G_CDS: -1.55 Total: -85.32 kcal
Atomic # 8 Polarization: -53.86 SS G_CDS: -1.16 Total: -55.01 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -87.18 4.94 -82.24 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000837005865.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.619 kcal
(2) G-P(sol) polarization free energy of solvation -87.181 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds