Wall clock time and date at job start Tue Mar 31 2020 12:58:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47279 * 2 1
4 4 O 1.42899 * 109.47093 * 119.99461 * 2 1 3
5 5 C 1.53000 * 109.47239 * 239.99726 * 2 1 3
6 6 N 1.46502 * 109.46876 * 180.02562 * 5 2 1
7 7 C 1.34770 * 120.00502 * 90.00056 * 6 5 2
8 8 O 1.21283 * 120.00370 * 177.82460 * 7 6 5
9 9 C 1.50700 * 119.99845 * 357.82592 * 7 6 5
10 10 C 1.50697 * 109.47087 * 184.28290 * 9 7 6
11 11 C 1.38319 * 119.97046 * 269.95423 * 10 9 7
12 12 C 1.38282 * 120.14396 * 180.02562 * 11 10 9
13 13 C 1.38123 * 120.06391 * 0.04704 * 12 11 10
14 14 C 1.38861 * 119.93225 * 359.97438 * 13 12 11
15 15 O 1.35755 * 120.06686 * 179.97438 * 14 13 12
16 16 C 1.34832 * 116.99718 * 354.39173 * 15 14 13
17 17 H 1.07989 * 120.00135 * 5.06882 * 16 15 14
18 18 C 1.38661 * 119.99453 * 185.06077 * 16 15 14
19 19 N 1.31549 * 119.99711 * 180.02562 * 18 16 15
20 20 Si 1.86800 * 119.99982 * 0.02562 * 18 16 15
21 21 H 1.48501 * 109.46961 * 89.99876 * 20 18 16
22 22 H 1.48498 * 109.46788 * 209.99744 * 20 18 16
23 23 H 1.48500 * 109.47444 * 330.00170 * 20 18 16
24 24 C 1.38082 * 119.96517 * 90.00378 * 10 9 7
25 25 C 1.46504 * 119.99461 * 269.99541 * 6 5 2
26 26 C 1.53001 * 117.49631 * 196.93364 * 25 6 5
27 27 C 1.53004 * 117.49730 * 128.31162 * 25 6 5
28 28 H 1.09000 * 109.47423 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47233 * 300.00320 * 1 2 3
30 30 H 1.08995 * 109.47122 * 60.00282 * 1 2 3
31 31 H 0.96707 * 114.00317 * 300.00560 * 4 2 1
32 32 H 1.08995 * 109.47071 * 59.99960 * 5 2 1
33 33 H 1.09005 * 109.46742 * 299.99703 * 5 2 1
34 34 H 1.09007 * 109.47344 * 64.28715 * 9 7 6
35 35 H 1.08994 * 109.47228 * 304.28587 * 9 7 6
36 36 H 1.08003 * 119.93053 * 0.02562 * 11 10 9
37 37 H 1.07991 * 119.96584 * 180.02562 * 12 11 10
38 38 H 1.07996 * 120.03339 * 179.97438 * 13 12 11
39 39 H 0.97001 * 120.00323 * 179.97438 * 19 18 16
40 40 H 1.08007 * 120.03011 * 0.25023 * 24 10 9
41 41 H 1.09000 * 115.55286 * 342.64420 * 25 6 5
42 42 H 1.09003 * 117.50224 * 0.02562 * 26 25 6
43 43 H 1.08997 * 117.49768 * 145.02294 * 26 25 6
44 44 H 1.08996 * 117.49993 * 214.97522 * 27 25 6
45 45 H 1.09004 * 117.49562 * 359.97438 * 27 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6735 1.1668
5 6 2.0400 -0.7213 -1.2492
6 7 3.5050 -0.7218 -1.2488
7 6 4.1785 -1.7328 -0.6652
8 8 5.3907 -1.7534 -0.6992
9 6 3.4253 -2.8378 0.0297
10 6 4.4041 -3.7789 0.6834
11 6 4.8904 -4.8671 -0.0184
12 6 5.7882 -5.7332 0.5782
13 6 6.2014 -5.5145 1.8779
14 6 5.7147 -4.4232 2.5853
15 8 6.1186 -4.2058 3.8630
16 6 6.9016 -5.1481 4.4261
17 1 7.2469 -5.9853 3.8378
18 6 7.2635 -5.0419 5.7604
19 7 8.0278 -5.9610 6.3097
20 14 6.6657 -3.5939 6.7779
21 1 5.3688 -3.9379 7.4142
22 1 7.6660 -3.2819 7.8301
23 1 6.4871 -2.4109 5.8982
24 6 4.8137 -3.5545 1.9829
25 6 4.2380 0.3768 -1.8830
26 6 5.7156 0.1464 -2.2063
27 6 5.3198 1.0745 -1.0561
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.7209 -0.2700 1.9980
32 1 1.6767 -0.2075 -2.1392
33 1 1.6767 -1.7490 -1.2491
34 1 2.8274 -3.3845 -0.6996
35 1 2.7706 -2.4097 0.7886
36 1 4.5682 -5.0407 -1.0345
37 1 6.1664 -6.5817 0.0274
38 1 6.9023 -6.1915 2.3434
39 1 8.2814 -5.8866 7.2430
40 1 4.4299 -2.7074 2.5320
41 1 3.6605 0.9894 -2.5754
42 1 6.1423 -0.8227 -1.9476
43 1 6.1104 0.6073 -3.1117
44 1 5.4544 2.1458 -1.2048
45 1 5.4859 0.7163 -0.0400
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000848357429.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:18
Heat of formation + Delta-G solvation = -42.001803 kcal
Electronic energy + Delta-G solvation = -27227.730092 eV
Core-core repulsion = 23405.844464 eV
Total energy + Delta-G solvation = -3821.885628 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.50934 -38.98830 -37.84077 -36.90815 -35.97443 -34.31791 -32.32064 -31.89260
-31.20733 -29.30566 -27.16596 -26.45832 -25.08189 -23.07212 -22.35263 -21.86897
-21.58936 -20.58194 -18.95774 -17.81959 -17.56564 -17.29405 -16.87285 -16.00942
-15.72091 -15.08347 -14.79571 -14.73857 -14.49851 -14.04752 -13.99131 -13.58150
-13.57712 -13.27365 -13.15013 -12.82178 -12.60792 -12.47846 -12.33475 -12.31866
-12.05591 -11.87438 -11.49436 -11.21000 -11.03072 -11.01012 -10.69927 -10.69369
-10.58426 -10.40673 -10.26400 -10.06462 -9.28424 -9.13406 -8.78160 -8.44622
-7.98912 -7.23133 -6.32315 -3.98422 2.15097 2.41606 2.74891 2.89447
3.27949 3.30649 3.47317 3.82745 3.89992 4.31837 4.45552 4.54720
4.60714 4.71604 4.78874 4.83363 4.89236 4.95076 5.07745 5.13602
5.18882 5.23125 5.36202 5.37613 5.44619 5.54313 5.63973 5.73804
5.74047 5.76759 5.97450 6.05191 6.14244 6.25199 6.36261 6.40316
6.68306 6.76768 6.92830 7.24473 7.35533 7.37009 7.39911 7.44626
7.73302 7.91973 8.14974 8.40540 9.03738 9.68432 10.75850
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.013859 B = 0.003545 C = 0.003347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.802734 B = 7897.416917 C = 8363.696266
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.081 3.919
3 H 0.058 0.942
4 O -0.556 6.556
5 C 0.119 3.881
6 N -0.590 5.590
7 C 0.530 3.470
8 O -0.516 6.516
9 C -0.103 4.103
10 C -0.030 4.030
11 C -0.189 4.189
12 C -0.077 4.077
13 C -0.219 4.219
14 C 0.159 3.841
15 O -0.221 6.221
16 C -0.387 4.387
17 H 0.106 0.894
18 C 0.062 3.938
19 N -0.884 5.884
20 Si 0.904 3.096
21 H -0.274 1.274
22 H -0.283 1.283
23 H -0.260 1.260
24 C -0.172 4.172
25 C 0.068 3.932
26 C -0.196 4.196
27 C -0.189 4.189
28 H 0.067 0.933
29 H 0.061 0.939
30 H 0.065 0.935
31 H 0.378 0.622
32 H 0.091 0.909
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.128 0.872
36 H 0.102 0.898
37 H 0.109 0.891
38 H 0.131 0.869
39 H 0.278 0.722
40 H 0.114 0.886
41 H 0.122 0.878
42 H 0.147 0.853
43 H 0.084 0.916
44 H 0.091 0.909
45 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.444 13.670 -16.542 27.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.021 3.979
3 H 0.076 0.924
4 O -0.363 6.363
5 C -0.004 4.004
6 N -0.322 5.322
7 C 0.320 3.680
8 O -0.391 6.391
9 C -0.142 4.142
10 C -0.031 4.031
11 C -0.208 4.208
12 C -0.096 4.096
13 C -0.239 4.239
14 C 0.108 3.892
15 O -0.127 6.127
16 C -0.462 4.462
17 H 0.123 0.877
18 C -0.140 4.140
19 N -0.522 5.522
20 Si 0.730 3.270
21 H -0.200 1.200
22 H -0.209 1.209
23 H -0.184 1.184
24 C -0.191 4.191
25 C -0.037 4.037
26 C -0.233 4.233
27 C -0.228 4.228
28 H 0.086 0.914
29 H 0.080 0.920
30 H 0.084 0.916
31 H 0.227 0.773
32 H 0.109 0.891
33 H 0.107 0.893
34 H 0.107 0.893
35 H 0.146 0.854
36 H 0.121 0.879
37 H 0.127 0.873
38 H 0.149 0.851
39 H 0.088 0.912
40 H 0.132 0.868
41 H 0.140 0.860
42 H 0.164 0.836
43 H 0.102 0.898
44 H 0.110 0.890
45 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -15.446 13.362 -16.647 26.348
hybrid contribution -0.490 0.985 0.891 1.416
sum -15.936 14.347 -15.756 26.609
Atomic orbital electron populations
1.22475 0.95937 1.03230 1.02699 1.22296 0.92701 0.96016 0.86908
0.92414 1.86513 1.77095 1.56739 1.15972 1.21683 0.79825 1.02521
0.96390 1.47250 1.05721 1.22255 1.56982 1.20761 0.87921 0.82144
0.77142 1.90515 1.14011 1.77016 1.57597 1.20892 0.98132 0.94167
1.00985 1.18736 0.96775 0.94572 0.93005 1.20432 1.03298 0.97868
0.99160 1.20718 0.96339 0.98075 0.94418 1.21271 1.05847 1.01056
0.95683 1.19029 0.92092 0.93021 0.85063 1.83570 1.61168 1.45249
1.22690 1.20768 1.26497 1.03626 0.95341 0.87712 1.24440 0.95882
0.97941 0.95767 1.69647 1.34941 1.33662 1.13990 0.86197 0.78489
0.82840 0.79477 1.19961 1.20885 1.18387 1.19953 1.02169 1.01566
0.95407 1.21619 0.89398 0.92486 1.00180 1.24060 0.95751 1.04912
0.98568 1.23225 1.03749 0.97725 0.98063 0.91366 0.91971 0.91581
0.77297 0.89079 0.89296 0.89311 0.85404 0.87938 0.87324 0.85117
0.91204 0.86811 0.86042 0.83602 0.89780 0.89047 0.88511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -0.87 9.53 37.16 0.35 -0.51 16
2 C 0.08 0.55 3.85 -26.73 -0.10 0.45 16
3 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
4 O -0.56 -5.02 9.78 -35.23 -0.34 -5.37 16
5 C 0.12 0.88 5.12 -4.04 -0.02 0.86 16
6 N -0.59 -6.63 2.79 -166.10 -0.46 -7.10 16
7 C 0.53 8.01 7.06 -10.99 -0.08 7.93 16
8 O -0.52 -9.80 11.89 5.56 0.07 -9.74 16
9 C -0.10 -1.47 4.29 -29.04 -0.12 -1.60 16
10 C -0.03 -0.57 4.37 -104.65 -0.46 -1.02 16
11 C -0.19 -3.50 9.70 -39.54 -0.38 -3.88 16
12 C -0.08 -1.53 10.04 -39.61 -0.40 -1.93 16
13 C -0.22 -5.10 9.17 -39.39 -0.36 -5.46 16
14 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16
15 O -0.22 -6.16 8.59 0.03 0.00 -6.16 16
16 C -0.39 -11.37 9.95 30.89 0.31 -11.07 16
17 H 0.11 3.15 5.44 -52.49 -0.29 2.86 16
18 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16
19 N -0.88 -26.32 13.96 55.48 0.77 -25.55 16
20 Si 0.90 22.44 28.62 -169.99 -4.86 17.57 16
21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
23 H -0.26 -6.52 7.11 56.52 0.40 -6.12 16
24 C -0.17 -3.73 9.65 -39.40 -0.38 -4.11 16
25 C 0.07 0.72 6.62 -67.93 -0.45 0.27 16
26 C -0.20 -2.46 9.64 -26.73 -0.26 -2.72 16
27 C -0.19 -2.27 9.90 -26.73 -0.26 -2.54 16
28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16
31 H 0.38 2.25 9.08 45.56 0.41 2.66 16
32 H 0.09 0.43 8.03 -51.93 -0.42 0.02 16
33 H 0.09 0.62 6.57 -51.93 -0.34 0.28 16
34 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16
35 H 0.13 1.73 4.86 -51.93 -0.25 1.48 16
36 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16
37 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16
38 H 0.13 3.16 5.64 -52.49 -0.30 2.86 16
39 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16
40 H 0.11 2.37 8.06 -52.48 -0.42 1.94 16
41 H 0.12 0.91 8.09 -51.93 -0.42 0.49 16
42 H 0.15 2.37 4.99 -53.22 -0.27 2.11 16
43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
45 H 0.10 1.46 7.79 -51.93 -0.40 1.06 16
LS Contribution 367.31 15.07 5.54 5.54
Total: -1.00 -34.74 367.31 -7.87 -42.61
By element:
Atomic # 1 Polarization: 13.72 SS G_CDS: -5.60 Total: 8.12 kcal
Atomic # 6 Polarization: -16.95 SS G_CDS: -2.97 Total: -19.93 kcal
Atomic # 7 Polarization: -32.96 SS G_CDS: 0.31 Total: -32.65 kcal
Atomic # 8 Polarization: -20.99 SS G_CDS: -0.28 Total: -21.27 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -4.86 Total: 17.57 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -34.74 -7.87 -42.61 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000848357429.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.604 kcal
(2) G-P(sol) polarization free energy of solvation -34.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.134 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.002 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds