Wall clock time and date at job start Tue Mar 31 2020 12:58:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47279 * 2 1
4 4 O 1.42899 * 109.47093 * 119.99461 * 2 1 3
5 5 C 1.53000 * 109.47239 * 239.99726 * 2 1 3
6 6 N 1.46502 * 109.46876 * 180.02562 * 5 2 1
7 7 C 1.34770 * 120.00502 * 90.00056 * 6 5 2
8 8 O 1.21283 * 120.00370 * 177.82460 * 7 6 5
9 9 C 1.50700 * 119.99845 * 357.82592 * 7 6 5
10 10 C 1.50697 * 109.47087 * 184.28290 * 9 7 6
11 11 C 1.38319 * 119.97046 * 269.95423 * 10 9 7
12 12 C 1.38282 * 120.14396 * 180.02562 * 11 10 9
13 13 C 1.38123 * 120.06391 * 0.04704 * 12 11 10
14 14 C 1.38861 * 119.93225 * 359.97438 * 13 12 11
15 15 O 1.35755 * 120.06686 * 179.97438 * 14 13 12
16 16 C 1.34832 * 116.99718 * 354.39173 * 15 14 13
17 17 H 1.07989 * 120.00135 * 5.06882 * 16 15 14
18 18 C 1.38661 * 119.99453 * 185.06077 * 16 15 14
19 19 N 1.31549 * 119.99711 * 180.02562 * 18 16 15
20 20 Si 1.86800 * 119.99982 * 0.02562 * 18 16 15
21 21 H 1.48501 * 109.46961 * 89.99876 * 20 18 16
22 22 H 1.48498 * 109.46788 * 209.99744 * 20 18 16
23 23 H 1.48500 * 109.47444 * 330.00170 * 20 18 16
24 24 C 1.38082 * 119.96517 * 90.00378 * 10 9 7
25 25 C 1.46504 * 119.99461 * 269.99541 * 6 5 2
26 26 C 1.53001 * 117.49631 * 196.93364 * 25 6 5
27 27 C 1.53004 * 117.49730 * 128.31162 * 25 6 5
28 28 H 1.09000 * 109.47423 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47233 * 300.00320 * 1 2 3
30 30 H 1.08995 * 109.47122 * 60.00282 * 1 2 3
31 31 H 0.96707 * 114.00317 * 300.00560 * 4 2 1
32 32 H 1.08995 * 109.47071 * 59.99960 * 5 2 1
33 33 H 1.09005 * 109.46742 * 299.99703 * 5 2 1
34 34 H 1.09007 * 109.47344 * 64.28715 * 9 7 6
35 35 H 1.08994 * 109.47228 * 304.28587 * 9 7 6
36 36 H 1.08003 * 119.93053 * 0.02562 * 11 10 9
37 37 H 1.07991 * 119.96584 * 180.02562 * 12 11 10
38 38 H 1.07996 * 120.03339 * 179.97438 * 13 12 11
39 39 H 0.97001 * 120.00323 * 179.97438 * 19 18 16
40 40 H 1.08007 * 120.03011 * 0.25023 * 24 10 9
41 41 H 1.09000 * 115.55286 * 342.64420 * 25 6 5
42 42 H 1.09003 * 117.50224 * 0.02562 * 26 25 6
43 43 H 1.08997 * 117.49768 * 145.02294 * 26 25 6
44 44 H 1.08996 * 117.49993 * 214.97522 * 27 25 6
45 45 H 1.09004 * 117.49562 * 359.97438 * 27 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6735 1.1668
5 6 2.0400 -0.7213 -1.2492
6 7 3.5050 -0.7218 -1.2488
7 6 4.1785 -1.7328 -0.6652
8 8 5.3907 -1.7534 -0.6992
9 6 3.4253 -2.8378 0.0297
10 6 4.4041 -3.7789 0.6834
11 6 4.8904 -4.8671 -0.0184
12 6 5.7882 -5.7332 0.5782
13 6 6.2014 -5.5145 1.8779
14 6 5.7147 -4.4232 2.5853
15 8 6.1186 -4.2058 3.8630
16 6 6.9016 -5.1481 4.4261
17 1 7.2469 -5.9853 3.8378
18 6 7.2635 -5.0419 5.7604
19 7 8.0278 -5.9610 6.3097
20 14 6.6657 -3.5939 6.7779
21 1 5.3688 -3.9379 7.4142
22 1 7.6660 -3.2819 7.8301
23 1 6.4871 -2.4109 5.8982
24 6 4.8137 -3.5545 1.9829
25 6 4.2380 0.3768 -1.8830
26 6 5.7156 0.1464 -2.2063
27 6 5.3198 1.0745 -1.0561
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.7209 -0.2700 1.9980
32 1 1.6767 -0.2075 -2.1392
33 1 1.6767 -1.7490 -1.2491
34 1 2.8274 -3.3845 -0.6996
35 1 2.7706 -2.4097 0.7886
36 1 4.5682 -5.0407 -1.0345
37 1 6.1664 -6.5817 0.0274
38 1 6.9023 -6.1915 2.3434
39 1 8.2814 -5.8866 7.2430
40 1 4.4299 -2.7074 2.5320
41 1 3.6605 0.9894 -2.5754
42 1 6.1423 -0.8227 -1.9476
43 1 6.1104 0.6073 -3.1117
44 1 5.4544 2.1458 -1.2048
45 1 5.4859 0.7163 -0.0400
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000848357429.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:17
Heat of formation + Delta-G solvation = -65.766978 kcal
Electronic energy + Delta-G solvation = -27228.760627 eV
Core-core repulsion = 23405.844464 eV
Total energy + Delta-G solvation = -3822.916163 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.58499 -40.74779 -38.62716 -38.39884 -37.18382 -35.17731 -34.47852 -33.28305
-31.87647 -31.06358 -28.56989 -27.21226 -27.03671 -24.20205 -23.31230 -23.22445
-22.42687 -22.21407 -20.11485 -19.61300 -18.83671 -18.34285 -18.04853 -17.03311
-16.88528 -16.76403 -16.31133 -15.77451 -15.71346 -15.50008 -15.21343 -15.15417
-14.86014 -14.50293 -14.37208 -14.15416 -13.88696 -13.86074 -13.53021 -13.07099
-13.05693 -12.87006 -12.78032 -12.58102 -12.46749 -12.37036 -12.33186 -12.01697
-11.90614 -11.65811 -11.29668 -11.25064 -10.91946 -10.83602 -10.30221 -9.63278
-9.36516 -9.06205 -8.50923 -6.23541 0.50005 0.70025 1.27915 1.33013
1.49923 1.64972 1.98961 2.27298 2.75978 3.00400 3.04944 3.11301
3.35343 3.70826 3.85551 3.98752 4.04301 4.07672 4.10474 4.17399
4.24886 4.30227 4.37557 4.47182 4.51502 4.56124 4.69408 4.72448
4.78647 4.82211 4.85620 4.98688 5.07762 5.11381 5.21647 5.27739
5.38863 5.39657 5.41571 5.66418 5.74139 5.77157 5.84122 5.91684
6.24272 6.43683 6.83404 6.92959 7.32878 7.58792 8.61099
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.013859 B = 0.003545 C = 0.003347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.802734 B = 7897.416917 C = 8363.696266
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.081 3.919
3 H 0.057 0.943
4 O -0.584 6.584
5 C 0.108 3.892
6 N -0.582 5.582
7 C 0.523 3.477
8 O -0.566 6.566
9 C -0.098 4.098
10 C -0.023 4.023
11 C -0.173 4.173
12 C -0.077 4.077
13 C -0.241 4.241
14 C 0.120 3.880
15 O -0.247 6.247
16 C -0.401 4.401
17 H 0.080 0.920
18 C 0.011 3.989
19 N -0.924 5.924
20 Si 0.971 3.029
21 H -0.260 1.260
22 H -0.264 1.264
23 H -0.269 1.269
24 C -0.179 4.179
25 C 0.085 3.915
26 C -0.212 4.212
27 C -0.196 4.196
28 H 0.065 0.935
29 H 0.063 0.937
30 H 0.083 0.917
31 H 0.389 0.611
32 H 0.128 0.872
33 H 0.097 0.903
34 H 0.126 0.874
35 H 0.139 0.861
36 H 0.144 0.856
37 H 0.141 0.859
38 H 0.108 0.892
39 H 0.285 0.715
40 H 0.116 0.884
41 H 0.168 0.832
42 H 0.108 0.892
43 H 0.106 0.894
44 H 0.117 0.883
45 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.868 15.811 -19.355 31.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.021 3.979
3 H 0.075 0.925
4 O -0.393 6.393
5 C -0.013 4.013
6 N -0.312 5.312
7 C 0.314 3.686
8 O -0.446 6.446
9 C -0.137 4.137
10 C -0.024 4.024
11 C -0.191 4.191
12 C -0.094 4.094
13 C -0.260 4.260
14 C 0.071 3.929
15 O -0.155 6.155
16 C -0.477 4.477
17 H 0.097 0.903
18 C -0.188 4.188
19 N -0.565 5.565
20 Si 0.793 3.207
21 H -0.185 1.185
22 H -0.189 1.189
23 H -0.194 1.194
24 C -0.198 4.198
25 C -0.019 4.019
26 C -0.249 4.249
27 C -0.235 4.235
28 H 0.084 0.916
29 H 0.082 0.918
30 H 0.102 0.898
31 H 0.239 0.761
32 H 0.146 0.854
33 H 0.115 0.885
34 H 0.144 0.856
35 H 0.157 0.843
36 H 0.162 0.838
37 H 0.159 0.841
38 H 0.126 0.874
39 H 0.095 0.905
40 H 0.134 0.866
41 H 0.185 0.815
42 H 0.126 0.874
43 H 0.125 0.875
44 H 0.135 0.865
45 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -18.932 15.516 -19.496 31.293
hybrid contribution 0.463 0.325 1.465 1.570
sum -18.469 15.841 -18.032 30.285
Atomic orbital electron populations
1.22391 0.94044 1.03370 1.03694 1.22367 0.94058 0.95561 0.85870
0.92547 1.86430 1.77859 1.57745 1.17257 1.22132 0.77074 1.03897
0.98246 1.47308 1.07464 1.21110 1.55366 1.20857 0.87357 0.83121
0.77267 1.90553 1.16039 1.78355 1.59635 1.20955 0.97156 0.93668
1.01930 1.19254 0.96354 0.95061 0.91712 1.20988 1.01146 0.96396
1.00600 1.21097 0.96068 0.99298 0.92986 1.21302 1.06417 1.00853
0.97458 1.19572 0.93893 0.94844 0.84557 1.83510 1.62360 1.45273
1.24394 1.20731 1.27393 1.03735 0.95868 0.90293 1.25268 0.96033
1.00777 0.96674 1.69726 1.36417 1.35542 1.14780 0.85227 0.78879
0.78767 0.77866 1.18505 1.18898 1.19404 1.20204 1.01705 1.01053
0.96838 1.21995 0.88877 0.91694 0.99372 1.23903 0.97956 1.03454
0.99581 1.23156 1.05514 0.98953 0.95872 0.91604 0.91802 0.89824
0.76066 0.85388 0.88470 0.85619 0.84350 0.83782 0.84102 0.87400
0.90531 0.86600 0.81467 0.87415 0.87532 0.86505 0.92555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -0.98 9.53 71.98 0.69 -0.29 16
2 C 0.08 0.82 3.85 30.59 0.12 0.94 16
3 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16
4 O -0.58 -9.31 9.78 -148.98 -1.46 -10.77 16
5 C 0.11 1.10 5.12 86.38 0.44 1.54 16
6 N -0.58 -11.25 2.79 -797.82 -2.23 -13.48 16
7 C 0.52 14.85 7.06 87.66 0.62 15.47 16
8 O -0.57 -21.56 11.89 -3.04 -0.04 -21.59 16
9 C -0.10 -2.55 4.29 29.10 0.12 -2.43 16
10 C -0.02 -0.83 4.37 -19.88 -0.09 -0.92 16
11 C -0.17 -5.99 9.70 22.30 0.22 -5.77 16
12 C -0.08 -2.98 10.04 22.25 0.22 -2.76 16
13 C -0.24 -11.77 9.17 22.39 0.21 -11.57 16
14 C 0.12 6.26 6.65 22.58 0.15 6.41 16
15 O -0.25 -14.61 8.59 -22.82 -0.20 -14.81 16
16 C -0.40 -25.16 9.95 67.92 0.68 -24.49 16
17 H 0.08 5.18 5.44 -2.92 -0.02 5.17 16
18 C 0.01 0.64 5.49 84.84 0.47 1.11 16
19 N -0.92 -57.31 13.96 21.61 0.30 -57.01 16
20 Si 0.97 47.73 28.62 68.60 1.96 49.69 16
21 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16
22 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16
23 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16
24 C -0.18 -7.91 9.65 22.39 0.22 -7.70 16
25 C 0.08 1.52 6.62 44.99 0.30 1.81 16
26 C -0.21 -5.06 9.64 30.60 0.29 -4.76 16
27 C -0.20 -4.50 9.90 30.60 0.30 -4.20 16
28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16
29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16
30 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16
31 H 0.39 4.07 9.08 -74.05 -0.67 3.40 16
32 H 0.13 0.42 8.03 -2.39 -0.02 0.40 16
33 H 0.10 0.87 6.57 -2.38 -0.02 0.86 16
34 H 0.13 2.33 7.50 -2.38 -0.02 2.31 16
35 H 0.14 3.39 4.86 -2.39 -0.01 3.38 16
36 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16
37 H 0.14 4.50 8.06 -2.92 -0.02 4.48 16
38 H 0.11 5.68 5.64 -2.91 -0.02 5.67 16
39 H 0.29 16.15 8.31 -92.71 -0.77 15.37 16
40 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16
41 H 0.17 1.52 8.09 -2.39 -0.02 1.50 16
42 H 0.11 3.57 4.99 -22.79 -0.11 3.46 16
43 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16
44 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16
45 H 0.06 1.76 7.79 -2.38 -0.02 1.74 16
Total: -1.00 -82.66 367.31 3.54 -79.12
By element:
Atomic # 1 Polarization: 26.19 SS G_CDS: 0.24 Total: 26.44 kcal
Atomic # 6 Polarization: -42.54 SS G_CDS: 4.95 Total: -37.59 kcal
Atomic # 7 Polarization: -68.57 SS G_CDS: -1.93 Total: -70.49 kcal
Atomic # 8 Polarization: -45.48 SS G_CDS: -1.69 Total: -47.17 kcal
Atomic # 14 Polarization: 47.73 SS G_CDS: 1.96 Total: 49.69 kcal
Total: -82.66 3.54 -79.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000848357429.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.357 kcal
(2) G-P(sol) polarization free energy of solvation -82.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.308 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.124 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds