Wall clock time and date at job start Tue Mar 31 2020 12:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46917 * 2 1 4 4 O 1.42906 * 109.47029 * 119.99757 * 2 1 3 5 5 C 1.53000 * 109.47200 * 239.99714 * 2 1 3 6 6 N 1.46495 * 109.46991 * 174.36462 * 5 2 1 7 7 C 1.34779 * 120.00640 * 95.44793 * 6 5 2 8 8 O 1.21280 * 120.00280 * 176.10541 * 7 6 5 9 9 C 1.50701 * 119.99293 * 356.10984 * 7 6 5 10 10 C 1.50708 * 109.46890 * 181.81180 * 9 7 6 11 11 C 1.38296 * 119.93386 * 89.99462 * 10 9 7 12 12 C 1.38104 * 120.06935 * 180.02562 * 11 10 9 13 13 C 1.38876 * 119.92773 * 359.97438 * 12 11 10 14 14 O 1.35753 * 120.06590 * 179.97438 * 13 12 11 15 15 C 1.34835 * 117.00035 * 354.51714 * 14 13 12 16 16 H 1.07995 * 119.99952 * 5.10020 * 15 14 13 17 17 C 1.38658 * 119.99969 * 185.10074 * 15 14 13 18 18 N 1.31557 * 120.00040 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99996 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47032 * 89.99958 * 19 17 15 21 21 H 1.48496 * 109.47427 * 209.99832 * 19 17 15 22 22 H 1.48505 * 109.47281 * 330.00533 * 19 17 15 23 23 C 1.38874 * 119.86580 * 0.27501 * 13 12 11 24 24 C 1.38099 * 119.92901 * 359.49711 * 23 13 12 25 25 C 1.46499 * 119.99911 * 275.44721 * 6 5 2 26 26 C 1.52998 * 117.50173 * 196.65585 * 25 6 5 27 27 C 1.53003 * 117.50145 * 128.02866 * 25 6 5 28 28 H 1.09002 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47347 * 299.99975 * 1 2 3 30 30 H 1.09001 * 109.47055 * 60.00448 * 1 2 3 31 31 H 0.96694 * 113.99857 * 56.65553 * 4 2 1 32 32 H 1.08998 * 109.46959 * 54.36017 * 5 2 1 33 33 H 1.09005 * 109.46701 * 294.35818 * 5 2 1 34 34 H 1.08999 * 109.47576 * 61.81289 * 9 7 6 35 35 H 1.08994 * 109.47265 * 301.80260 * 9 7 6 36 36 H 1.07998 * 119.96319 * 0.02562 * 11 10 9 37 37 H 1.08000 * 120.03445 * 179.97438 * 12 11 10 38 38 H 0.96995 * 119.99706 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03627 * 179.71816 * 23 13 12 40 40 H 1.08003 * 119.96873 * 180.23140 * 24 23 13 41 41 H 1.09008 * 115.54977 * 342.36139 * 25 6 5 42 42 H 1.09002 * 117.49865 * 359.97438 * 26 25 6 43 43 H 1.08998 * 117.50320 * 145.02208 * 26 25 6 44 44 H 1.09002 * 117.50063 * 214.98037 * 27 25 6 45 45 H 1.08993 * 117.49588 * 0.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 3.4986 -0.6049 -1.3189 7 6 4.2775 -1.5922 -0.8339 8 8 5.4826 -1.5288 -0.9549 9 6 3.6508 -2.7749 -0.1415 10 6 4.7332 -3.7055 0.3420 11 6 5.2695 -3.5424 1.6063 12 6 6.2619 -4.3931 2.0520 13 6 6.7208 -5.4136 1.2293 14 8 7.6965 -6.2512 1.6643 15 6 8.2572 -5.9701 2.8579 16 1 7.8705 -5.1605 3.4590 17 6 9.3304 -6.7206 3.3137 18 7 9.8778 -6.4461 4.4780 19 14 9.9989 -8.1214 2.2744 20 1 11.0614 -7.6063 1.3737 21 1 10.5665 -9.1686 3.1611 22 1 8.9003 -8.7029 1.4617 23 6 6.1839 -5.5715 -0.0417 24 6 5.1885 -4.7204 -0.4798 25 6 4.1109 0.5847 -1.9158 26 6 5.5844 0.4948 -2.3175 27 6 5.1734 1.3193 -1.0959 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6796 -1.5790 1.2592 32 1 1.5965 -0.2691 -2.1363 33 1 1.7614 -1.7740 -1.2000 34 1 3.0026 -3.3036 -0.8403 35 1 3.0630 -2.4287 0.7086 36 1 4.9119 -2.7489 2.2456 37 1 6.6806 -4.2650 3.0392 38 1 10.6288 -6.9709 4.7966 39 1 6.5419 -6.3613 -0.6855 40 1 4.7678 -4.8450 -1.4667 41 1 3.4537 1.1871 -2.5431 42 1 6.0986 -0.4493 -2.1372 43 1 5.8971 1.0380 -3.2092 44 1 5.2156 2.4049 -1.1840 45 1 5.4172 0.9173 -0.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848359720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:23 Heat of formation + Delta-G solvation = -65.626038 kcal Electronic energy + Delta-G solvation = -26926.157752 eV Core-core repulsion = 23103.247701 eV Total energy + Delta-G solvation = -3822.910052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60899 -40.75783 -38.71340 -38.50017 -37.17197 -35.05922 -34.50680 -32.87803 -31.82572 -31.76775 -28.53029 -27.11626 -26.78428 -23.98863 -23.69161 -23.30863 -22.72477 -22.04230 -20.05411 -19.78667 -19.09577 -18.51594 -17.42974 -17.14853 -16.70801 -16.32705 -16.21225 -15.94625 -15.80630 -15.59906 -15.42240 -15.15275 -14.78455 -14.67354 -14.35195 -14.20782 -14.08936 -14.02005 -13.24866 -13.09629 -13.04190 -12.91456 -12.64156 -12.55997 -12.46540 -12.37998 -12.29770 -12.06636 -11.92549 -11.69659 -11.29299 -11.27044 -11.03638 -10.91659 -10.22411 -9.79190 -9.30268 -8.97584 -8.51191 -6.23921 0.58179 0.61573 1.29422 1.34548 1.50901 1.65188 1.98942 2.27349 2.75652 2.98735 3.03598 3.17331 3.51871 3.69694 3.81607 3.90767 4.03129 4.03689 4.09579 4.16411 4.17075 4.23625 4.36931 4.45132 4.53358 4.57354 4.65941 4.70736 4.77021 4.81454 4.86023 4.96620 4.99537 5.10350 5.21120 5.24898 5.36204 5.39313 5.40239 5.56453 5.74152 5.79500 5.83363 5.90725 6.23686 6.46616 6.82977 6.88507 7.34596 7.57610 8.60887 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002892 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.674399 B = 9680.241192 C =10112.559642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.084 3.916 3 H 0.087 0.913 4 O -0.582 6.582 5 C 0.074 3.926 6 N -0.582 5.582 7 C 0.513 3.487 8 O -0.565 6.565 9 C -0.085 4.085 10 C -0.133 4.133 11 C -0.064 4.064 12 C -0.238 4.238 13 C 0.119 3.881 14 O -0.245 6.245 15 C -0.400 4.400 16 H 0.077 0.923 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.973 3.027 20 H -0.268 1.268 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.192 4.192 24 C -0.058 4.058 25 C 0.085 3.915 26 C -0.214 4.214 27 C -0.197 4.197 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.385 0.615 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.285 0.715 39 H 0.129 0.871 40 H 0.154 0.846 41 H 0.164 0.836 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.277 13.900 -16.361 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.024 3.976 3 H 0.105 0.895 4 O -0.391 6.391 5 C -0.048 4.048 6 N -0.312 5.312 7 C 0.304 3.696 8 O -0.444 6.444 9 C -0.124 4.124 10 C -0.134 4.134 11 C -0.082 4.082 12 C -0.258 4.258 13 C 0.070 3.930 14 O -0.153 6.153 15 C -0.477 4.477 16 H 0.095 0.905 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.795 3.205 20 H -0.193 1.193 21 H -0.189 1.189 22 H -0.185 1.185 23 C -0.211 4.211 24 C -0.076 4.076 25 C -0.019 4.019 26 C -0.251 4.251 27 C -0.236 4.236 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.235 0.765 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.181 0.819 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.134 14.236 -16.281 31.669 hybrid contribution 0.835 -0.686 0.622 1.247 sum -22.299 13.550 -15.660 30.431 Atomic orbital electron populations 1.22400 0.93772 1.03941 1.03459 1.22443 0.94290 0.96619 0.84268 0.89512 1.86717 1.74871 1.32115 1.45419 1.22752 0.77622 1.04129 1.00294 1.47341 1.07416 1.17658 1.58829 1.21196 0.86675 0.84257 0.77508 1.90547 1.16878 1.79260 1.57757 1.20807 0.96743 0.92281 1.02526 1.19265 1.01435 0.98534 0.94173 1.20849 0.94326 0.96669 0.96385 1.21226 1.03245 1.00125 1.01154 1.19659 0.89243 0.90015 0.94088 1.83506 1.47422 1.47992 1.36390 1.20703 1.14882 1.18703 0.93381 0.90548 1.25319 0.95290 1.01053 0.97304 1.69736 1.24666 1.42135 1.20081 0.85185 0.78860 0.78029 0.78410 1.19298 1.18865 1.18489 1.20504 1.02301 1.04731 0.93557 1.20929 0.94306 0.93029 0.99301 1.21930 0.90648 0.89390 0.99952 1.23967 0.98271 1.04236 0.98639 1.23160 1.05585 0.99200 0.95619 0.90543 0.92464 0.89770 0.76454 0.86480 0.87315 0.84921 0.85717 0.85682 0.87859 0.90541 0.85303 0.82872 0.81870 0.87071 0.87871 0.86710 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.73 9.51 71.98 0.68 -0.04 16 2 C 0.08 0.75 3.83 30.59 0.12 0.86 16 3 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 4 O -0.58 -8.42 11.67 -148.98 -1.74 -10.16 16 5 C 0.07 0.53 5.05 86.38 0.44 0.97 16 6 N -0.58 -9.92 2.80 -797.83 -2.24 -12.16 16 7 C 0.51 12.83 7.26 87.66 0.64 13.47 16 8 O -0.57 -20.19 11.94 -3.03 -0.04 -20.23 16 9 C -0.08 -1.69 4.29 29.10 0.12 -1.57 16 10 C -0.13 -4.18 4.38 -19.83 -0.09 -4.26 16 11 C -0.06 -2.45 9.69 22.25 0.22 -2.24 16 12 C -0.24 -11.43 9.17 22.39 0.21 -11.22 16 13 C 0.12 5.95 6.65 22.58 0.15 6.10 16 14 O -0.25 -14.10 8.59 -22.83 -0.20 -14.29 16 15 C -0.40 -24.89 9.95 67.92 0.68 -24.22 16 16 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 17 C 0.01 0.50 5.49 84.83 0.47 0.97 16 18 N -0.93 -57.47 13.96 21.61 0.30 -57.17 16 19 Si 0.97 47.28 28.62 68.60 1.96 49.24 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 23 C -0.19 -7.83 9.99 22.39 0.22 -7.60 16 24 C -0.06 -1.87 9.69 22.25 0.22 -1.66 16 25 C 0.09 1.47 6.63 44.99 0.30 1.77 16 26 C -0.21 -5.04 9.64 30.60 0.29 -4.75 16 27 C -0.20 -4.43 9.91 30.60 0.30 -4.13 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.11 16 29 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.38 2.96 7.36 -74.06 -0.55 2.41 16 32 H 0.12 0.22 8.11 -2.39 -0.02 0.20 16 33 H 0.11 0.36 6.31 -2.38 -0.02 0.35 16 34 H 0.13 1.56 7.32 -2.39 -0.02 1.54 16 35 H 0.13 1.97 4.58 -2.39 -0.01 1.96 16 36 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.10 5.46 5.64 -2.91 -0.02 5.44 16 38 H 0.28 16.16 8.31 -92.71 -0.77 15.39 16 39 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 40 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.16 1.48 8.14 -2.38 -0.02 1.47 16 42 H 0.11 3.63 4.93 -28.61 -0.14 3.49 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 1.76 7.86 -2.39 -0.02 1.74 16 Total: -1.00 -83.45 367.04 3.36 -80.09 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.34 Total: 22.23 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 4.96 Total: -37.55 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.93 Total: -69.33 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.97 Total: -44.68 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.96 Total: 49.24 kcal Total: -83.45 3.36 -80.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848359720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.465 kcal (2) G-P(sol) polarization free energy of solvation -83.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds