Wall clock time and date at job start Tue Mar 31 2020 12:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21290 * 119.99724 * 2 1 4 4 C 1.46828 * 119.99775 * 180.02562 * 2 1 3 5 5 C 1.39617 * 120.15505 * 355.12434 * 4 2 1 6 6 C 1.39181 * 119.73717 * 180.02562 * 5 4 2 7 7 C 1.47654 * 119.98126 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99953 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00023 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99760 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47352 * 325.00482 * 10 9 7 12 12 C 1.53002 * 109.46809 * 85.00464 * 10 9 7 13 13 C 1.50705 * 109.46807 * 205.00161 * 10 9 7 14 14 H 1.07998 * 119.99868 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99629 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00173 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 119.99960 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47386 * 269.99743 * 17 15 13 19 19 H 1.48500 * 109.47376 * 29.99583 * 17 15 13 20 20 H 1.48500 * 109.47713 * 149.99606 * 17 15 13 21 21 C 1.40025 * 120.03932 * 0.25757 * 6 5 4 22 22 C 1.37637 * 120.31214 * 359.48362 * 21 6 5 23 23 C 1.38925 * 120.26043 * 0.51857 * 22 21 6 24 24 O 1.35436 * 120.01794 * 179.71904 * 23 22 21 25 25 C 1.42900 * 117.00237 * 354.40044 * 24 23 22 26 26 C 1.52996 * 109.47079 * 84.05525 * 25 24 23 27 27 C 1.52998 * 109.47102 * 204.05359 * 25 24 23 28 28 H 1.08990 * 109.47049 * 185.12916 * 1 2 3 29 29 H 1.08997 * 109.46736 * 305.13814 * 1 2 3 30 30 H 1.09008 * 109.46723 * 65.13146 * 1 2 3 31 31 H 1.08001 * 120.13070 * 0.04842 * 5 4 2 32 32 H 0.96996 * 119.99997 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47297 * 179.97438 * 12 10 9 34 34 H 1.08998 * 109.46869 * 299.99883 * 12 10 9 35 35 H 1.09005 * 109.47356 * 59.99906 * 12 10 9 36 36 H 0.97000 * 120.00032 * 179.97438 * 16 15 13 37 37 H 1.08001 * 119.84915 * 179.72643 * 21 6 5 38 38 H 1.07997 * 119.86718 * 180.23725 * 22 21 6 39 39 H 1.08999 * 109.46654 * 324.05298 * 25 24 23 40 40 H 1.09010 * 109.46887 * 299.99841 * 26 25 24 41 41 H 1.09000 * 109.47623 * 59.99777 * 26 25 24 42 42 H 1.09003 * 109.47341 * 179.97438 * 26 25 24 43 43 H 1.09002 * 109.47323 * 59.99731 * 27 25 24 44 44 H 1.08998 * 109.47337 * 179.97438 * 27 25 24 45 45 H 1.08997 * 109.47030 * 300.00258 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2716 -0.0006 5 6 1.5501 -2.4804 0.1015 6 6 2.2547 -3.6807 0.1006 7 6 1.5294 -4.9622 0.2089 8 8 0.3170 -4.9688 0.2982 9 7 2.2113 -6.1248 0.2076 10 6 1.4916 -7.3962 0.3155 11 1 0.6264 -7.2699 0.9662 12 6 1.0252 -7.8377 -1.0732 13 6 2.4071 -8.4440 0.8946 14 1 3.4231 -8.1882 1.1564 15 6 1.9473 -9.7290 1.0901 16 7 0.7098 -10.0403 0.7718 17 14 3.0817 -11.0276 1.8086 18 1 3.8025 -11.7183 0.7092 19 1 4.0643 -10.3802 2.7145 20 1 2.2804 -12.0167 2.5733 21 6 3.6516 -3.6734 0.0032 22 6 4.3343 -2.4830 -0.1029 23 6 3.6438 -1.2775 -0.1032 24 8 4.3210 -0.1088 -0.2021 25 6 5.7480 -0.1818 -0.1787 26 6 6.2661 -0.4870 -1.5855 27 6 6.3193 1.1556 0.2962 28 1 -0.3633 -1.0235 0.0919 29 1 -0.3633 0.5915 0.8404 30 1 -0.3633 0.4322 -0.9325 31 1 0.4730 -2.4841 0.1804 32 1 3.1786 -6.1195 0.1359 33 1 0.4901 -8.7839 -0.9930 34 1 0.3632 -7.0798 -1.4920 35 1 1.8905 -7.9640 -1.7240 36 1 0.3865 -10.9445 0.9090 37 1 4.1956 -4.6064 0.0072 38 1 5.4114 -2.4860 -0.1815 39 1 6.0601 -0.9729 0.5031 40 1 5.8590 -1.4400 -1.9239 41 1 5.9540 0.3040 -2.2673 42 1 7.3546 -0.5423 -1.5678 43 1 5.9502 1.3731 1.2985 44 1 7.4077 1.0998 0.3145 45 1 6.0071 1.9467 -0.3855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848971804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:29 Heat of formation + Delta-G solvation = -93.247441 kcal Electronic energy + Delta-G solvation = -26574.835360 eV Core-core repulsion = 22750.727555 eV Total energy + Delta-G solvation = -3824.107806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89074 -39.18476 -38.87857 -37.08738 -34.86584 -33.55873 -32.64519 -32.02272 -30.42538 -29.38645 -28.51757 -27.60947 -25.29818 -24.06354 -23.86594 -22.16180 -20.68888 -20.26504 -19.35357 -18.42934 -17.63193 -16.48171 -16.08964 -15.83896 -15.41081 -15.18118 -15.08307 -14.87774 -14.69501 -14.38512 -14.17903 -13.75835 -13.68223 -13.26097 -13.00524 -12.72027 -12.67291 -12.51731 -12.39045 -12.22493 -12.06923 -11.97204 -11.71631 -11.48479 -11.16395 -11.10006 -11.01886 -10.91348 -10.75552 -10.36046 -10.27103 -9.70205 -9.25520 -9.20389 -9.08037 -8.59889 -8.40660 -7.94070 -6.15895 -4.25542 0.56089 1.00925 2.27299 2.85302 3.21594 3.25780 3.28908 3.30698 3.91271 4.00506 4.06004 4.33358 4.38940 4.49954 4.58501 4.72304 4.76682 4.94613 5.10083 5.14621 5.16815 5.20094 5.20709 5.31352 5.34643 5.37161 5.43429 5.51354 5.73384 5.76160 5.82118 5.83565 5.98321 6.08586 6.25522 6.45292 6.79700 6.93298 7.11090 7.15462 7.39365 7.51359 7.55671 7.65160 7.87434 8.11035 8.58937 8.72934 9.03410 9.41989 10.90087 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.002966 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.834681 B = 9437.834470 C =10693.928983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.398 3.602 3 O -0.449 6.449 4 C -0.220 4.220 5 C 0.018 3.982 6 C -0.174 4.174 7 C 0.547 3.453 8 O -0.552 6.552 9 N -0.702 5.702 10 C 0.264 3.736 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.285 1.285 21 C -0.014 4.014 22 C -0.234 4.234 23 C 0.203 3.797 24 O -0.278 6.278 25 C 0.069 3.931 26 C -0.182 4.182 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.387 0.613 33 H 0.091 0.909 34 H 0.016 0.984 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 18.789 -2.969 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.276 3.724 3 O -0.325 6.325 4 C -0.222 4.222 5 C -0.001 4.001 6 C -0.177 4.177 7 C 0.332 3.668 8 O -0.432 6.432 9 N -0.350 5.350 10 C 0.163 3.837 11 H 0.069 0.931 12 C -0.206 4.206 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.210 1.210 21 C -0.033 4.033 22 C -0.253 4.253 23 C 0.154 3.846 24 O -0.189 6.189 25 C 0.013 3.987 26 C -0.239 4.239 27 C -0.203 4.203 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.171 0.829 32 H 0.220 0.780 33 H 0.109 0.891 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.578 19.336 -2.916 21.353 hybrid contribution 1.293 -1.192 0.280 1.781 sum 9.871 18.144 -2.637 20.823 Atomic orbital electron populations 1.22262 0.93803 1.05187 1.04746 1.22142 0.91409 0.87224 0.71605 1.90561 1.71873 1.33798 1.36248 1.19905 0.90851 0.95932 1.15484 1.21536 1.00865 0.89122 0.88535 1.20163 0.93629 0.94824 1.09095 1.18034 0.87306 0.83625 0.77824 1.90729 1.13506 1.87527 1.51462 1.46486 1.10201 1.07031 1.71268 1.18786 0.92921 0.77755 0.94237 0.93143 1.22086 0.99066 1.02170 0.97296 1.21204 0.98415 0.94515 1.43266 0.92088 1.24882 0.95248 0.98354 0.95167 1.69900 1.15053 1.20149 1.46877 0.86445 0.80407 0.81116 0.79113 1.20535 1.19848 1.21034 1.21416 0.93306 0.98091 0.90516 1.21221 1.00807 0.91614 1.11654 1.19407 0.90807 0.85255 0.89116 1.86294 1.19746 1.27534 1.85314 1.22599 0.78443 0.99944 0.97733 1.22418 1.01847 1.03117 0.96555 1.21818 1.00425 0.95590 1.02483 0.89489 0.88972 0.88774 0.82896 0.77972 0.89060 0.96520 0.95457 0.92516 0.84563 0.84248 0.90592 0.91577 0.91274 0.90799 0.91545 0.90505 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 10.19 36.01 0.37 -1.55 16 2 C 0.40 5.16 7.21 -30.83 -0.22 4.94 16 3 O -0.45 -7.03 15.91 -16.36 -0.26 -7.29 16 4 C -0.22 -2.95 5.88 -105.00 -0.62 -3.57 16 5 C 0.02 0.26 8.98 -38.72 -0.35 -0.09 16 6 C -0.17 -2.67 5.87 -105.03 -0.62 -3.28 16 7 C 0.55 10.78 7.73 -12.41 -0.10 10.69 16 8 O -0.55 -12.81 15.99 5.30 0.08 -12.72 16 9 N -0.70 -14.27 5.02 -55.94 -0.28 -14.55 16 10 C 0.26 6.59 2.56 -69.08 -0.18 6.42 16 11 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 12 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 13 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -24.47 11.32 55.43 0.63 -23.84 16 17 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.01 -0.18 9.52 -39.13 -0.37 -0.55 16 22 C -0.23 -2.65 8.16 -39.55 -0.32 -2.97 16 23 C 0.20 2.62 6.61 -38.42 -0.25 2.36 16 24 O -0.28 -3.51 7.87 -39.91 -0.31 -3.82 16 25 C 0.07 0.61 2.85 -26.73 -0.08 0.53 16 26 C -0.18 -1.37 9.14 37.16 0.34 -1.03 16 27 C -0.15 -1.09 9.56 37.16 0.36 -0.73 16 28 H 0.09 0.77 5.61 -51.93 -0.29 0.48 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.15 2.02 5.51 -52.49 -0.29 1.73 16 32 H 0.39 6.68 6.55 -40.82 -0.27 6.41 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.14 1.47 6.37 -52.49 -0.33 1.14 16 38 H 0.14 1.21 5.36 -52.49 -0.28 0.93 16 39 H 0.08 0.59 6.37 -51.93 -0.33 0.26 16 40 H 0.07 0.53 6.79 -51.92 -0.35 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -32.44 370.03 -7.88 -40.32 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.20 Total: 5.72 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.09 Total: -4.61 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.35 Total: -38.39 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.49 Total: -23.84 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.44 -7.88 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848971804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.928 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds