Wall clock time and date at job start Tue Mar 31 2020 12:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47573 * 2 1 4 4 N 1.46503 * 109.46864 * 119.99744 * 2 1 3 5 5 C 1.34768 * 120.00213 * 279.38762 * 4 2 1 6 6 O 1.21286 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00402 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47307 * 180.02562 * 7 5 4 9 9 C 1.38312 * 119.96676 * 269.72435 * 8 7 5 10 10 C 1.38285 * 120.13953 * 179.76868 * 9 8 7 11 11 C 1.38121 * 120.06431 * 0.50621 * 10 9 8 12 12 C 1.38856 * 119.93489 * 359.75089 * 11 10 9 13 13 O 1.35746 * 120.07182 * 179.97438 * 12 11 10 14 14 C 1.34831 * 117.00159 * 354.28434 * 13 12 11 15 15 H 1.07999 * 119.99770 * 5.07031 * 14 13 12 16 16 C 1.38658 * 120.00154 * 185.08198 * 14 13 12 17 17 N 1.31556 * 119.99924 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99747 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47349 * 90.00589 * 18 16 14 20 20 H 1.48503 * 109.47033 * 210.00138 * 18 16 14 21 21 H 1.48491 * 109.47441 * 330.00077 * 18 16 14 22 22 C 1.38082 * 119.96225 * 90.00369 * 8 7 5 23 23 C 1.52998 * 109.47009 * 239.99600 * 2 1 3 24 24 C 1.52999 * 115.56216 * 149.49154 * 23 2 1 25 25 O 1.42892 * 109.47006 * 330.28173 * 24 23 2 26 26 C 1.53004 * 117.50060 * 295.17656 * 23 2 1 27 27 C 1.53001 * 117.49984 * 3.79931 * 23 2 1 28 28 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46659 * 300.00513 * 1 2 3 30 30 H 1.08997 * 109.46892 * 60.00116 * 1 2 3 31 31 H 0.97003 * 120.00072 * 99.39179 * 4 2 1 32 32 H 1.09006 * 109.47105 * 300.00440 * 7 5 4 33 33 H 1.09000 * 109.46729 * 60.00292 * 7 5 4 34 34 H 1.08002 * 119.93780 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.96709 * 180.25925 * 10 9 8 36 36 H 1.08006 * 120.03211 * 179.76931 * 11 10 9 37 37 H 0.97000 * 119.99910 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.03690 * 359.95235 * 22 8 7 39 39 H 1.09001 * 109.47453 * 90.28430 * 24 23 2 40 40 H 1.09006 * 109.47019 * 210.28049 * 24 23 2 41 41 H 0.96700 * 114.00483 * 180.02562 * 25 24 23 42 42 H 1.09004 * 117.49454 * 0.02562 * 26 23 2 43 43 H 1.08997 * 117.50435 * 214.98137 * 26 23 2 44 44 H 1.09000 * 117.49728 * 145.02193 * 27 23 2 45 45 H 1.09000 * 117.49637 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.0634 -0.0427 2.3771 6 8 1.6993 1.1119 2.4496 7 6 2.5662 -0.7529 3.6076 8 6 2.5144 0.1855 4.7856 9 6 3.6071 0.9787 5.0856 10 6 3.5617 1.8445 6.1629 11 6 2.4281 1.9120 6.9491 12 6 1.3314 1.1131 6.6538 13 8 0.2161 1.1769 7.4249 14 6 0.2791 1.9466 8.5301 15 1 1.1592 2.5417 8.7242 16 6 -0.7858 1.9739 9.4177 17 7 -0.7240 2.7245 10.4963 18 14 -2.3081 0.9448 9.0817 19 1 -2.1473 -0.3944 9.7028 20 1 -3.4985 1.6187 9.6598 21 1 -2.4889 0.7922 7.6158 22 6 1.3783 0.2483 5.5678 23 6 2.0400 -0.7213 -1.2492 24 6 3.3812 -0.2276 -1.7953 25 8 3.5373 1.1600 -1.4918 26 6 1.7311 -2.2143 -1.3785 27 6 0.9987 -1.2022 -2.2618 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3092 -1.6141 1.1383 32 1 1.9389 -1.6216 3.8076 33 1 3.5943 -1.0767 3.4455 34 1 4.4962 0.9248 4.4748 35 1 4.4149 2.4655 6.3921 36 1 2.3946 2.5857 7.7926 37 1 -1.4692 2.7439 11.1170 38 1 0.5268 -0.3740 5.3353 39 1 4.1913 -0.7935 -1.3355 40 1 3.4074 -0.3684 -2.8760 41 1 4.3673 1.5412 -1.8094 42 1 1.1642 -2.6824 -0.5737 43 1 2.4833 -2.8447 -1.8526 44 1 1.2692 -1.1668 -3.3172 45 1 -0.0496 -1.0043 -2.0383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855478858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:56 Heat of formation + Delta-G solvation = -62.388082 kcal Electronic energy + Delta-G solvation = -26326.548581 eV Core-core repulsion = 22503.778938 eV Total energy + Delta-G solvation = -3822.769643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31448 -39.24908 -38.50919 -36.60667 -36.32841 -34.14854 -32.39107 -32.12139 -30.22755 -29.30694 -27.69018 -26.92647 -25.10768 -23.90943 -22.80122 -21.73901 -21.01285 -20.04013 -19.30207 -17.85384 -17.62992 -17.17422 -16.95977 -15.97086 -15.80911 -15.37902 -15.17073 -15.02438 -14.57373 -14.29534 -13.85177 -13.75599 -13.53935 -13.36520 -13.25646 -12.94273 -12.63943 -12.46526 -12.36280 -12.10507 -11.84120 -11.67637 -11.48318 -11.36339 -11.23211 -10.89726 -10.76832 -10.73537 -10.64848 -10.53934 -10.10640 -10.09692 -9.57540 -9.31466 -9.02877 -8.80279 -8.05583 -7.27319 -6.34303 -4.00679 2.10006 2.37466 2.85522 2.99640 3.26971 3.29893 3.46334 3.49478 3.75904 4.25737 4.30304 4.38093 4.51930 4.56628 4.68715 4.81409 4.96607 5.02915 5.10956 5.14490 5.16846 5.21977 5.31023 5.40259 5.43766 5.44162 5.52400 5.64414 5.65366 5.70489 5.76797 5.92554 6.05258 6.17462 6.20241 6.33700 6.53305 6.61520 6.87556 7.18689 7.28191 7.30021 7.39995 7.56272 7.69862 7.88798 8.12136 8.42339 9.01513 9.65335 10.73708 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.002692 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.634195 B =10400.520055 C =11240.845392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.184 3.816 3 H 0.106 0.894 4 N -0.732 5.732 5 C 0.514 3.486 6 O -0.517 6.517 7 C -0.094 4.094 8 C -0.033 4.033 9 C -0.187 4.187 10 C -0.076 4.076 11 C -0.218 4.218 12 C 0.160 3.840 13 O -0.220 6.220 14 C -0.387 4.387 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.883 5.883 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.175 4.175 23 C -0.137 4.137 24 C 0.116 3.884 25 O -0.564 6.564 26 C -0.169 4.169 27 C -0.166 4.166 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.394 0.606 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.278 0.722 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.380 0.620 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -11.568 -25.931 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.124 0.876 4 N -0.385 5.385 5 C 0.300 3.700 6 O -0.391 6.391 7 C -0.134 4.134 8 C -0.034 4.034 9 C -0.206 4.206 10 C -0.094 4.094 11 C -0.237 4.237 12 C 0.109 3.891 13 O -0.126 6.126 14 C -0.463 4.463 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.194 4.194 23 C -0.138 4.138 24 C 0.038 3.962 25 O -0.369 6.369 26 C -0.206 4.206 27 C -0.203 4.203 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.228 0.772 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.476 -10.811 -25.404 28.604 hybrid contribution 0.117 -0.707 -0.300 0.777 sum 7.594 -11.519 -25.704 29.172 Atomic orbital electron populations 1.22309 0.95561 1.01708 1.02899 1.20176 0.93127 0.97704 0.81030 0.87638 1.46134 1.67976 1.16046 1.08334 1.20692 0.77980 0.87244 0.84094 1.90762 1.46183 1.17003 1.85120 1.20596 1.03031 0.98485 0.91311 1.18659 0.93920 0.96832 0.93988 1.20414 0.98401 1.01349 1.00455 1.20731 0.96999 0.97185 0.94533 1.21288 0.94379 1.04338 1.03711 1.19005 0.86306 0.92966 0.90837 1.83567 1.31480 1.62938 1.34574 1.20767 1.06034 1.22729 0.96766 0.87673 1.24448 0.98591 0.96920 0.94077 1.69649 1.32932 1.38470 1.11059 0.86189 0.81022 0.79919 0.79833 1.19948 1.20847 1.18375 1.19935 0.98593 1.03240 0.97616 1.21696 0.96698 0.96694 0.98697 1.21547 0.94610 0.82598 0.97479 1.86520 1.44268 1.23572 1.82552 1.23054 1.03557 0.90792 1.03242 1.23319 0.98362 1.02449 0.96169 0.92713 0.91461 0.91582 0.77217 0.88442 0.88486 0.87777 0.87213 0.85027 0.91162 0.86903 0.93288 0.93446 0.77248 0.88045 0.88416 0.88556 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 7.98 37.16 0.30 -1.49 16 2 C 0.18 1.99 2.53 -67.93 -0.17 1.82 16 3 H 0.11 1.51 6.28 -51.93 -0.33 1.19 16 4 N -0.73 -7.74 5.08 -53.80 -0.27 -8.01 16 5 C 0.51 7.47 7.73 -10.99 -0.08 7.38 16 6 O -0.52 -10.18 15.49 5.55 0.09 -10.09 16 7 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 8 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 9 C -0.19 -3.39 9.70 -39.54 -0.38 -3.77 16 10 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 11 C -0.22 -5.01 9.17 -39.40 -0.36 -5.38 16 12 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 13 O -0.22 -6.09 8.59 0.06 0.00 -6.09 16 14 C -0.39 -11.33 9.95 30.89 0.31 -11.02 16 15 H 0.11 3.14 5.44 -52.49 -0.29 2.85 16 16 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 17 N -0.88 -26.19 13.96 55.48 0.77 -25.42 16 18 Si 0.90 22.38 28.62 -169.99 -4.86 17.52 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.17 -3.71 9.65 -39.39 -0.38 -4.09 16 23 C -0.14 -1.04 2.25 -154.51 -0.35 -1.39 16 24 C 0.12 0.79 7.22 37.16 0.27 1.06 16 25 O -0.56 -4.95 12.06 -35.23 -0.42 -5.37 16 26 C -0.17 -0.93 8.97 -26.73 -0.24 -1.17 16 27 C -0.17 -1.03 9.15 -26.73 -0.24 -1.28 16 28 H 0.05 0.50 7.18 -51.93 -0.37 0.12 16 29 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 30 H 0.07 0.63 7.22 -51.93 -0.38 0.25 16 31 H 0.39 2.95 7.84 -40.82 -0.32 2.63 16 32 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.13 3.14 5.64 -52.48 -0.30 2.85 16 37 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.11 2.26 8.06 -52.49 -0.42 1.83 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.25 7.88 -51.93 -0.41 -0.16 16 41 H 0.38 1.66 9.12 45.56 0.42 2.07 16 42 H 0.10 0.55 7.77 -51.93 -0.40 0.14 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 45 H 0.11 0.69 5.82 -51.93 -0.30 0.39 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -35.68 372.79 -7.39 -43.08 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.59 Total: 7.06 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.72 Total: -18.28 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.50 Total: -33.43 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.34 Total: -21.56 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.86 Total: 17.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.68 -7.39 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855478858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.312 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds