Wall clock time and date at job start Tue Mar 31 2020 12:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47573 * 2 1 4 4 N 1.46503 * 109.46864 * 119.99744 * 2 1 3 5 5 C 1.34768 * 120.00213 * 279.38762 * 4 2 1 6 6 O 1.21286 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00402 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47307 * 180.02562 * 7 5 4 9 9 C 1.38312 * 119.96676 * 269.72435 * 8 7 5 10 10 C 1.38285 * 120.13953 * 179.76868 * 9 8 7 11 11 C 1.38121 * 120.06431 * 0.50621 * 10 9 8 12 12 C 1.38856 * 119.93489 * 359.75089 * 11 10 9 13 13 O 1.35746 * 120.07182 * 179.97438 * 12 11 10 14 14 C 1.34831 * 117.00159 * 354.28434 * 13 12 11 15 15 H 1.07999 * 119.99770 * 5.07031 * 14 13 12 16 16 C 1.38658 * 120.00154 * 185.08198 * 14 13 12 17 17 N 1.31556 * 119.99924 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99747 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47349 * 90.00589 * 18 16 14 20 20 H 1.48503 * 109.47033 * 210.00138 * 18 16 14 21 21 H 1.48491 * 109.47441 * 330.00077 * 18 16 14 22 22 C 1.38082 * 119.96225 * 90.00369 * 8 7 5 23 23 C 1.52998 * 109.47009 * 239.99600 * 2 1 3 24 24 C 1.52999 * 115.56216 * 149.49154 * 23 2 1 25 25 O 1.42892 * 109.47006 * 330.28173 * 24 23 2 26 26 C 1.53004 * 117.50060 * 295.17656 * 23 2 1 27 27 C 1.53001 * 117.49984 * 3.79931 * 23 2 1 28 28 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46659 * 300.00513 * 1 2 3 30 30 H 1.08997 * 109.46892 * 60.00116 * 1 2 3 31 31 H 0.97003 * 120.00072 * 99.39179 * 4 2 1 32 32 H 1.09006 * 109.47105 * 300.00440 * 7 5 4 33 33 H 1.09000 * 109.46729 * 60.00292 * 7 5 4 34 34 H 1.08002 * 119.93780 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.96709 * 180.25925 * 10 9 8 36 36 H 1.08006 * 120.03211 * 179.76931 * 11 10 9 37 37 H 0.97000 * 119.99910 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.03690 * 359.95235 * 22 8 7 39 39 H 1.09001 * 109.47453 * 90.28430 * 24 23 2 40 40 H 1.09006 * 109.47019 * 210.28049 * 24 23 2 41 41 H 0.96700 * 114.00483 * 180.02562 * 25 24 23 42 42 H 1.09004 * 117.49454 * 0.02562 * 26 23 2 43 43 H 1.08997 * 117.50435 * 214.98137 * 26 23 2 44 44 H 1.09000 * 117.49728 * 145.02193 * 27 23 2 45 45 H 1.09000 * 117.49637 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.0634 -0.0427 2.3771 6 8 1.6993 1.1119 2.4496 7 6 2.5662 -0.7529 3.6076 8 6 2.5144 0.1855 4.7856 9 6 3.6071 0.9787 5.0856 10 6 3.5617 1.8445 6.1629 11 6 2.4281 1.9120 6.9491 12 6 1.3314 1.1131 6.6538 13 8 0.2161 1.1769 7.4249 14 6 0.2791 1.9466 8.5301 15 1 1.1592 2.5417 8.7242 16 6 -0.7858 1.9739 9.4177 17 7 -0.7240 2.7245 10.4963 18 14 -2.3081 0.9448 9.0817 19 1 -2.1473 -0.3944 9.7028 20 1 -3.4985 1.6187 9.6598 21 1 -2.4889 0.7922 7.6158 22 6 1.3783 0.2483 5.5678 23 6 2.0400 -0.7213 -1.2492 24 6 3.3812 -0.2276 -1.7953 25 8 3.5373 1.1600 -1.4918 26 6 1.7311 -2.2143 -1.3785 27 6 0.9987 -1.2022 -2.2618 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3092 -1.6141 1.1383 32 1 1.9389 -1.6216 3.8076 33 1 3.5943 -1.0767 3.4455 34 1 4.4962 0.9248 4.4748 35 1 4.4149 2.4655 6.3921 36 1 2.3946 2.5857 7.7926 37 1 -1.4692 2.7439 11.1170 38 1 0.5268 -0.3740 5.3353 39 1 4.1913 -0.7935 -1.3355 40 1 3.4074 -0.3684 -2.8760 41 1 4.3673 1.5412 -1.8094 42 1 1.1642 -2.6824 -0.5737 43 1 2.4833 -2.8447 -1.8526 44 1 1.2692 -1.1668 -3.3172 45 1 -0.0496 -1.0043 -2.0383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855478858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:55 Heat of formation + Delta-G solvation = -88.983663 kcal Electronic energy + Delta-G solvation = -26327.701852 eV Core-core repulsion = 22503.778938 eV Total energy + Delta-G solvation = -3823.922914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32985 -40.74611 -39.59280 -38.24909 -36.97581 -35.08878 -34.48702 -33.55964 -31.33560 -30.91112 -28.50848 -27.98763 -27.16415 -24.77245 -23.35119 -23.25520 -22.55527 -21.24760 -20.10765 -19.62286 -18.84723 -18.37986 -18.04291 -16.89942 -16.87857 -16.66773 -16.51080 -16.15000 -15.76724 -15.66870 -15.49578 -15.05287 -14.96150 -14.54940 -14.40698 -14.16391 -14.00442 -13.83237 -13.64916 -13.32128 -13.04239 -12.84825 -12.55913 -12.49027 -12.43653 -12.34154 -12.14607 -11.98991 -11.93385 -11.40730 -11.31809 -11.16368 -10.93889 -10.86698 -10.46821 -10.01877 -9.66129 -9.06556 -8.50868 -6.23582 0.48848 0.70013 1.28703 1.33580 1.50471 1.75740 2.18569 2.27426 2.75146 2.87297 3.05070 3.15817 3.31099 3.68608 3.76614 3.80738 4.03379 4.07229 4.12585 4.20467 4.29886 4.42277 4.45810 4.52573 4.55476 4.58055 4.64609 4.68775 4.70540 4.80718 4.81279 4.97039 5.01255 5.07307 5.15409 5.24954 5.27479 5.31144 5.39060 5.61310 5.64970 5.72573 5.76280 5.91219 6.24961 6.67486 6.83433 6.93659 7.40948 7.58529 8.61102 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.002692 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.634195 B =10400.520055 C =11240.845392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.067 0.933 4 N -0.709 5.709 5 C 0.512 3.488 6 O -0.579 6.579 7 C -0.090 4.090 8 C -0.027 4.027 9 C -0.171 4.171 10 C -0.078 4.078 11 C -0.241 4.241 12 C 0.119 3.881 13 O -0.247 6.247 14 C -0.400 4.400 15 H 0.079 0.921 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.972 3.028 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.182 4.182 23 C -0.153 4.153 24 C 0.113 3.887 25 O -0.593 6.593 26 C -0.150 4.150 27 C -0.168 4.168 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.414 0.586 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.285 0.715 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.395 0.605 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -14.954 -29.254 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 H 0.085 0.915 4 N -0.362 5.362 5 C 0.300 3.700 6 O -0.458 6.458 7 C -0.129 4.129 8 C -0.028 4.028 9 C -0.190 4.190 10 C -0.096 4.096 11 C -0.261 4.261 12 C 0.070 3.930 13 O -0.155 6.155 14 C -0.477 4.477 15 H 0.097 0.903 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.193 1.193 22 C -0.201 4.201 23 C -0.153 4.153 24 C 0.035 3.965 25 O -0.402 6.402 26 C -0.187 4.187 27 C -0.205 4.205 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.251 0.749 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.245 0.755 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.914 -14.252 -28.780 33.330 hybrid contribution -0.057 0.330 0.471 0.578 sum 8.856 -13.922 -28.309 32.767 Atomic orbital electron populations 1.22257 0.95747 1.02476 1.01454 1.20050 0.92935 0.96475 0.82555 0.91506 1.45936 1.66324 1.16688 1.07236 1.20947 0.77223 0.86513 0.85339 1.90760 1.49222 1.19757 1.86086 1.20710 1.06414 0.97668 0.88123 1.19231 0.92332 0.96734 0.94473 1.21004 0.99672 0.99061 0.99228 1.21111 0.96521 0.97720 0.94245 1.21318 0.95875 1.04610 1.04256 1.19588 0.86394 0.94972 0.92014 1.83505 1.33317 1.63876 1.34804 1.20723 1.05713 1.23203 0.98027 0.90305 1.25285 1.01579 0.98213 0.93796 1.69731 1.34328 1.40262 1.12181 0.85209 0.77527 0.78837 0.79062 1.18530 1.19018 1.19279 1.20270 1.00226 1.02674 0.96915 1.21614 0.97701 0.98316 0.97704 1.21694 0.94404 0.81742 0.98624 1.86493 1.45680 1.24933 1.83092 1.23169 1.03261 0.89450 1.02782 1.23405 0.97813 1.02489 0.96766 0.90710 0.95171 0.90805 0.74898 0.85545 0.84066 0.83527 0.84184 0.87493 0.90544 0.86104 0.92206 0.91688 0.75510 0.87634 0.86328 0.87268 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 7.98 71.98 0.57 -2.76 16 2 C 0.18 3.74 2.53 44.99 0.11 3.85 16 3 H 0.07 1.93 6.28 -2.39 -0.02 1.92 16 4 N -0.71 -12.98 5.08 -442.53 -2.25 -15.23 16 5 C 0.51 13.67 7.73 87.66 0.68 14.35 16 6 O -0.58 -22.68 15.49 -3.05 -0.05 -22.73 16 7 C -0.09 -1.96 5.83 29.10 0.17 -1.79 16 8 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 9 C -0.17 -5.67 9.70 22.30 0.22 -5.45 16 10 C -0.08 -2.97 10.04 22.25 0.22 -2.75 16 11 C -0.24 -11.61 9.17 22.39 0.21 -11.41 16 12 C 0.12 6.08 6.65 22.58 0.15 6.23 16 13 O -0.25 -14.40 8.59 -22.71 -0.19 -14.60 16 14 C -0.40 -24.94 9.95 67.92 0.68 -24.26 16 15 H 0.08 5.14 5.44 -2.91 -0.02 5.13 16 16 C 0.01 0.56 5.49 84.83 0.47 1.03 16 17 N -0.92 -57.19 13.96 21.61 0.30 -56.89 16 18 Si 0.97 47.50 28.62 68.60 1.96 49.46 16 19 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 22 C -0.18 -7.69 9.65 22.39 0.22 -7.47 16 23 C -0.15 -1.89 2.25 -52.18 -0.12 -2.01 16 24 C 0.11 1.23 7.22 71.98 0.52 1.75 16 25 O -0.59 -9.68 12.06 -148.98 -1.80 -11.48 16 26 C -0.15 -1.00 8.97 30.60 0.27 -0.73 16 27 C -0.17 -1.56 9.15 30.60 0.28 -1.28 16 28 H 0.07 1.21 7.18 -2.39 -0.02 1.19 16 29 H 0.03 0.84 7.87 -2.39 -0.02 0.82 16 30 H 0.07 1.37 7.22 -2.39 -0.02 1.36 16 31 H 0.41 4.35 7.84 -92.71 -0.73 3.63 16 32 H 0.13 2.12 8.08 -2.38 -0.02 2.10 16 33 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.11 5.58 5.64 -2.91 -0.02 5.57 16 37 H 0.28 16.11 8.31 -92.71 -0.77 15.34 16 38 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.07 0.47 7.88 -2.38 -0.02 0.45 16 41 H 0.40 2.96 9.12 -74.06 -0.68 2.29 16 42 H 0.11 0.65 7.77 -2.38 -0.02 0.63 16 43 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.11 0.75 8.03 -2.39 -0.02 0.73 16 45 H 0.10 1.05 5.82 -2.39 -0.01 1.04 16 Total: -1.00 -84.94 372.79 2.16 -82.77 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.37 Total: 22.40 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 4.56 Total: -33.70 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.95 Total: -72.13 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -2.04 Total: -48.80 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.96 Total: 49.46 kcal Total: -84.94 2.16 -82.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855478858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.209 kcal (2) G-P(sol) polarization free energy of solvation -84.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds