Wall clock time and date at job start Tue Mar 31 2020 12:10:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09006 * 109.46859 * 2 1
4 4 N 1.46499 * 109.47413 * 239.99982 * 2 1 3
5 5 C 1.34779 * 119.99829 * 89.39906 * 4 2 1
6 6 O 1.21274 * 120.00324 * 359.97438 * 5 4 2
7 7 C 1.50703 * 119.99809 * 180.02562 * 5 4 2
8 8 C 1.50696 * 109.47221 * 179.97438 * 7 5 4
9 9 C 1.38314 * 119.96802 * 269.72725 * 8 7 5
10 10 C 1.38282 * 120.13887 * 179.76912 * 9 8 7
11 11 C 1.38117 * 120.06900 * 0.50059 * 10 9 8
12 12 C 1.38857 * 119.93147 * 359.75331 * 11 10 9
13 13 O 1.35749 * 120.07003 * 179.97438 * 12 11 10
14 14 C 1.34831 * 117.00203 * 354.29844 * 13 12 11
15 15 H 1.07998 * 119.99663 * 5.07889 * 14 13 12
16 16 C 1.38652 * 119.99890 * 185.08311 * 14 13 12
17 17 N 1.31549 * 120.00467 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 119.99621 * 180.02562 * 16 14 13
19 19 H 1.48500 * 109.47653 * 59.99521 * 18 16 14
20 20 H 1.48502 * 109.47158 * 179.97438 * 18 16 14
21 21 H 1.48501 * 109.47064 * 299.99503 * 18 16 14
22 22 C 1.38082 * 119.96281 * 89.99521 * 8 7 5
23 23 C 1.52998 * 109.47255 * 119.99508 * 2 1 3
24 24 C 1.52998 * 115.55155 * 185.03384 * 23 2 1
25 25 O 1.42902 * 109.47167 * 29.63709 * 24 23 2
26 26 C 1.53000 * 117.51959 * 330.73991 * 23 2 1
27 27 C 1.53005 * 60.00135 * 107.47702 * 26 23 2
28 28 H 1.08999 * 109.47307 * 60.00339 * 1 2 3
29 29 H 1.08997 * 109.47116 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.47356 * 300.00017 * 1 2 3
31 31 H 0.97001 * 119.99847 * 269.39877 * 4 2 1
32 32 H 1.09000 * 109.46689 * 300.00053 * 7 5 4
33 33 H 1.09001 * 109.47275 * 59.99634 * 7 5 4
34 34 H 1.08000 * 119.93185 * 359.97438 * 9 8 7
35 35 H 1.08005 * 119.96722 * 180.25314 * 10 9 8
36 36 H 1.08003 * 120.03788 * 179.77479 * 11 10 9
37 37 H 0.96998 * 120.00839 * 180.02562 * 17 16 14
38 38 H 1.07994 * 120.03618 * 359.95998 * 22 8 7
39 39 H 1.09003 * 109.47538 * 269.64021 * 24 23 2
40 40 H 1.09006 * 109.47488 * 149.64115 * 24 23 2
41 41 H 0.96693 * 113.99874 * 179.97438 * 25 24 23
42 42 H 1.09005 * 117.49602 * 214.96566 * 26 23 2
43 43 H 1.08997 * 117.50105 * 359.97438 * 26 23 2
44 44 H 1.08998 * 117.49615 * 252.50841 * 27 26 23
45 45 H 1.09000 * 117.51344 * 107.48042 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 -1.1961
5 6 2.2315 0.0005 -2.3335
6 8 2.0185 1.1939 -2.3668
7 6 2.7334 -0.7100 -3.5641
8 6 2.8863 0.2810 -4.6890
9 6 1.8285 0.5205 -5.5474
10 6 1.9634 1.4326 -6.5779
11 6 3.1590 2.0998 -6.7594
12 6 4.2246 1.8577 -5.9027
13 8 5.4011 2.5115 -6.0788
14 6 5.5094 3.2931 -7.1721
15 1 4.6554 3.4420 -7.8162
16 6 6.7173 3.9055 -7.4696
17 7 7.7575 3.7245 -6.6849
18 14 6.8671 4.9888 -8.9840
19 1 5.9078 6.1179 -8.8819
20 1 8.2501 5.5218 -9.0766
21 1 6.5622 4.1886 -10.1972
22 6 4.0842 0.9448 -4.8652
23 6 2.0400 -0.7211 1.2493
24 6 3.5564 -0.6981 1.4517
25 8 4.0956 0.4943 0.8776
26 6 1.1596 -0.6772 2.4998
27 6 1.2863 -1.9745 1.6986
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 2.1884 -1.6452 -1.1696
32 1 3.6985 -1.1693 -3.3502
33 1 2.0202 -1.4815 -3.8544
34 1 0.8941 -0.0035 -5.4104
35 1 1.1343 1.6205 -7.2440
36 1 3.2650 2.8094 -7.5667
37 1 8.6024 4.1532 -6.8928
38 1 4.9110 0.7546 -4.1970
39 1 4.0009 -1.5676 0.9674
40 1 3.7811 -0.7218 2.5181
41 1 5.0546 0.5761 0.9694
42 1 1.6608 -0.6319 3.4668
43 1 0.2170 -0.1341 2.4329
44 1 0.4268 -2.2850 1.1045
45 1 1.8708 -2.7828 2.1381
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000855478860.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:59
Heat of formation + Delta-G solvation = -62.987000 kcal
Electronic energy + Delta-G solvation = -26397.946233 eV
Core-core repulsion = 22575.150619 eV
Total energy + Delta-G solvation = -3822.795614 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.19226 -39.10548 -38.36373 -36.39866 -36.16191 -34.13884 -32.32895 -31.94405
-30.10728 -29.04642 -27.60961 -26.73616 -25.15861 -23.70000 -22.93688 -21.58263
-21.06448 -20.03107 -19.25073 -17.67036 -17.49100 -16.99635 -16.79330 -16.11383
-15.53550 -15.29430 -15.03430 -14.80243 -14.38668 -14.32043 -14.05467 -13.72192
-13.48864 -13.25948 -13.12556 -12.81459 -12.53296 -12.47848 -12.29769 -11.98404
-11.68547 -11.44913 -11.40234 -11.21706 -11.17480 -10.85035 -10.73863 -10.68436
-10.52291 -10.44385 -10.38843 -9.97166 -9.47055 -9.24142 -8.93186 -8.74647
-7.94513 -7.10964 -6.35468 -3.94305 2.21193 2.50460 2.96911 3.09204
3.19002 3.20517 3.22619 3.58288 3.89284 4.04468 4.35022 4.47543
4.54689 4.66845 4.84008 5.02746 5.07211 5.11024 5.16866 5.20200
5.26386 5.32818 5.39286 5.42887 5.45094 5.52749 5.61224 5.73805
5.76487 5.77620 5.86001 6.02918 6.04948 6.16579 6.28533 6.45031
6.62240 6.77239 7.03124 7.17004 7.38484 7.47244 7.48214 7.54405
7.67413 7.94480 8.09885 8.53803 9.10322 9.82448 10.82975
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.020421 B = 0.002653 C = 0.002446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1370.803609 B =10550.977861 C =11446.023495
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.188 3.812
3 H 0.103 0.897
4 N -0.727 5.727
5 C 0.517 3.483
6 O -0.518 6.518
7 C -0.094 4.094
8 C -0.031 4.031
9 C -0.197 4.197
10 C -0.075 4.075
11 C -0.232 4.232
12 C 0.155 3.845
13 O -0.180 6.180
14 C -0.390 4.390
15 H 0.090 0.910
16 C 0.038 3.962
17 N -0.866 5.866
18 Si 0.940 3.060
19 H -0.270 1.270
20 H -0.279 1.279
21 H -0.270 1.270
22 C -0.173 4.173
23 C -0.137 4.137
24 C 0.116 3.884
25 O -0.560 6.560
26 C -0.165 4.165
27 C -0.171 4.171
28 H 0.063 0.937
29 H 0.056 0.944
30 H 0.065 0.935
31 H 0.394 0.606
32 H 0.097 0.903
33 H 0.095 0.905
34 H 0.102 0.898
35 H 0.106 0.894
36 H 0.125 0.875
37 H 0.269 0.731
38 H 0.113 0.887
39 H 0.047 0.953
40 H 0.045 0.955
41 H 0.381 0.619
42 H 0.096 0.904
43 H 0.103 0.897
44 H 0.103 0.897
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.618 -13.949 16.100 24.264
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.084 3.916
3 H 0.121 0.879
4 N -0.379 5.379
5 C 0.303 3.697
6 O -0.391 6.391
7 C -0.134 4.134
8 C -0.031 4.031
9 C -0.216 4.216
10 C -0.094 4.094
11 C -0.251 4.251
12 C 0.102 3.898
13 O -0.084 6.084
14 C -0.466 4.466
15 H 0.108 0.892
16 C -0.165 4.165
17 N -0.501 5.501
18 Si 0.765 3.235
19 H -0.196 1.196
20 H -0.204 1.204
21 H -0.196 1.196
22 C -0.193 4.193
23 C -0.138 4.138
24 C 0.038 3.962
25 O -0.365 6.365
26 C -0.202 4.202
27 C -0.208 4.208
28 H 0.082 0.918
29 H 0.075 0.925
30 H 0.084 0.916
31 H 0.227 0.773
32 H 0.115 0.885
33 H 0.113 0.887
34 H 0.120 0.880
35 H 0.124 0.876
36 H 0.143 0.857
37 H 0.079 0.921
38 H 0.131 0.869
39 H 0.066 0.934
40 H 0.063 0.937
41 H 0.228 0.772
42 H 0.114 0.886
43 H 0.121 0.879
44 H 0.121 0.879
45 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -11.933 -12.853 16.054 23.777
hybrid contribution 0.711 -0.079 -0.511 0.879
sum -11.222 -12.932 15.543 23.125
Atomic orbital electron populations
1.22371 0.95909 1.01870 1.02671 1.20075 0.92421 0.97807 0.81334
0.87926 1.45925 1.69391 1.11646 1.10944 1.20645 0.77172 0.87797
0.84055 1.90748 1.49677 1.14864 1.83861 1.20586 1.02965 0.97939
0.91885 1.18664 0.93546 0.96535 0.94391 1.20338 0.97896 1.04109
0.99208 1.20667 0.96302 0.95529 0.96865 1.21162 0.94091 1.05941
1.03914 1.19276 0.86861 0.90537 0.93149 1.83976 1.28919 1.53101
1.42432 1.21264 0.98062 1.25493 1.01821 0.89227 1.25255 0.94264
0.98025 0.98987 1.70028 1.01430 1.41870 1.36804 0.85802 0.77861
0.79632 0.80235 1.19559 1.20351 1.19569 1.19941 0.98033 1.00655
1.00622 1.21717 0.93032 1.02352 0.96651 1.21520 0.90944 0.87616
0.96127 1.86574 1.26730 1.41480 1.81701 1.23238 1.01704 1.00619
0.94673 1.23138 1.02698 0.91301 1.03627 0.91755 0.92476 0.91611
0.77334 0.88500 0.88662 0.88025 0.87555 0.85681 0.92113 0.86889
0.93447 0.93701 0.77185 0.88559 0.87865 0.87895 0.88626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.66 8.56 37.16 0.32 -1.35 16
2 C 0.19 2.11 2.27 -67.93 -0.15 1.96 16
3 H 0.10 1.58 6.84 -51.93 -0.35 1.22 16
4 N -0.73 -8.17 4.95 -53.80 -0.27 -8.44 16
5 C 0.52 7.97 7.82 -10.98 -0.09 7.88 16
6 O -0.52 -10.70 15.62 5.56 0.09 -10.61 16
7 C -0.09 -1.32 5.83 -29.04 -0.17 -1.49 16
8 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16
9 C -0.20 -3.71 9.70 -39.54 -0.38 -4.10 16
10 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16
11 C -0.23 -5.42 9.17 -39.40 -0.36 -5.78 16
12 C 0.15 4.01 6.65 -39.11 -0.26 3.75 16
13 O -0.18 -5.41 9.76 0.05 0.00 -5.41 16
14 C -0.39 -11.36 9.49 30.89 0.29 -11.07 16
15 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16
16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16
17 N -0.87 -26.16 13.67 55.48 0.76 -25.41 16
18 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16
19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16
22 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16
23 C -0.14 -1.15 2.14 -154.51 -0.33 -1.48 16
24 C 0.12 0.97 7.13 37.16 0.26 1.23 16
25 O -0.56 -6.23 12.46 -35.23 -0.44 -6.67 16
26 C -0.16 -1.12 9.45 -26.73 -0.25 -1.37 16
27 C -0.17 -1.02 9.58 -26.73 -0.26 -1.28 16
28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16
30 H 0.07 0.56 6.31 -51.93 -0.33 0.23 16
31 H 0.39 3.23 8.65 -40.82 -0.35 2.88 16
32 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16
33 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16
34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16
35 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16
36 H 0.13 2.89 5.64 -52.48 -0.30 2.60 16
37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
38 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16
39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
40 H 0.04 0.31 7.88 -51.93 -0.41 -0.10 16
41 H 0.38 2.81 9.12 45.56 0.42 3.23 16
42 H 0.10 0.57 8.03 -51.93 -0.42 0.16 16
43 H 0.10 0.68 6.08 -51.93 -0.32 0.36 16
44 H 0.10 0.58 6.43 -51.93 -0.33 0.24 16
45 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16
LS Contribution 374.30 15.07 5.64 5.64
Total: -1.00 -36.78 374.30 -7.46 -44.24
By element:
Atomic # 1 Polarization: 15.35 SS G_CDS: -5.51 Total: 9.85 kcal
Atomic # 6 Polarization: -16.67 SS G_CDS: -2.71 Total: -19.38 kcal
Atomic # 7 Polarization: -34.33 SS G_CDS: 0.49 Total: -33.84 kcal
Atomic # 8 Polarization: -22.34 SS G_CDS: -0.35 Total: -22.69 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -36.78 -7.46 -44.24 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000855478860.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.750 kcal
(2) G-P(sol) polarization free energy of solvation -36.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.529 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds