Wall clock time and date at job start Tue Mar 31 2020 12:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34930 * 117.00157 * 2 1 4 4 O 1.21650 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.41781 * 119.99930 * 179.97438 * 3 2 1 6 6 C 1.35088 * 119.99800 * 180.02562 * 5 3 2 7 7 C 1.46964 * 120.00021 * 179.97438 * 6 5 3 8 8 C 1.39996 * 120.11373 * 179.97438 * 7 6 5 9 9 C 1.37647 * 119.88081 * 180.02562 * 8 7 6 10 10 C 1.39034 * 120.11721 * 0.02562 * 9 8 7 11 11 O 1.35732 * 119.88200 * 179.97438 * 10 9 8 12 12 C 1.42907 * 116.99420 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46615 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47300 * 64.99983 * 13 12 11 15 15 C 1.46903 * 111.00000 * 179.97438 * 14 13 12 16 16 H 1.09007 * 109.47052 * 34.99701 * 15 14 13 17 17 C 1.53000 * 109.47096 * 275.00251 * 15 14 13 18 18 C 1.50694 * 109.47066 * 155.00016 * 15 14 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.39027 * 120.23119 * 0.23498 * 10 9 8 27 27 C 1.37655 * 120.11147 * 359.48311 * 26 10 9 28 28 H 1.09005 * 109.46787 * 60.00444 * 1 2 3 29 29 H 1.09004 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47367 * 300.00284 * 1 2 3 31 31 H 1.07998 * 120.00132 * 359.97438 * 5 3 2 32 32 H 1.07997 * 120.00495 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.05829 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.94216 * 179.97438 * 9 8 7 35 35 H 1.08993 * 109.47094 * 60.00031 * 12 11 10 36 36 H 1.08995 * 109.47167 * 299.99826 * 12 11 10 37 37 H 1.09002 * 109.47131 * 304.99684 * 13 12 11 38 38 H 1.09001 * 109.46935 * 184.99836 * 13 12 11 39 39 H 1.00892 * 111.00121 * 56.04554 * 14 13 12 40 40 H 1.08998 * 109.47089 * 59.99840 * 17 15 14 41 41 H 1.08995 * 109.47131 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.47106 * 299.99893 * 17 15 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.07999 * 119.94697 * 179.74545 * 26 10 9 45 45 H 1.08005 * 120.05768 * 180.25314 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2022 0.0000 4 8 1.3790 2.2225 -0.0005 5 6 3.4574 1.2764 0.0005 6 6 4.0707 2.4800 0.0011 7 6 5.5384 2.5569 0.0022 8 6 6.1764 3.8030 0.0022 9 6 7.5513 3.8695 0.0027 10 6 8.3061 2.7019 0.0027 11 8 9.6616 2.7730 0.0027 12 6 10.3761 1.5353 0.0022 13 6 11.8803 1.8150 0.0029 14 7 12.2543 2.4791 1.2587 15 6 13.6952 2.7632 1.2952 16 1 14.0416 3.0136 0.2924 17 6 14.4456 1.5293 1.8006 18 6 13.9551 3.9234 2.2209 19 1 13.1323 4.4023 2.7309 20 6 15.2434 4.3745 2.4161 21 7 16.2454 3.7917 1.7947 22 14 15.5655 5.8132 3.5631 23 1 17.0221 6.1003 3.6001 24 1 14.8368 7.0103 3.0723 25 1 15.0939 5.4723 4.9293 26 6 7.6775 1.4619 -0.0027 27 6 6.3031 1.3844 0.0026 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0456 0.3706 0.0014 32 1 3.4826 3.3858 0.0007 33 1 5.5909 4.7106 0.0010 34 1 8.0445 4.8303 0.0023 35 1 10.1127 0.9642 -0.8880 36 1 10.1128 0.9634 0.8919 37 1 12.1301 2.4614 -0.8384 38 1 12.4246 0.8749 -0.0871 39 1 11.9744 1.9283 2.0563 40 1 14.2575 0.6901 1.1309 41 1 15.5146 1.7403 1.8281 42 1 14.0992 1.2788 2.8033 43 1 17.1516 4.1092 1.9318 44 1 8.2684 0.5579 -0.0069 45 1 5.8157 0.4206 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:33 Heat of formation + Delta-G solvation = -79.818821 kcal Electronic energy + Delta-G solvation = -24783.739014 eV Core-core repulsion = 20960.213517 eV Total energy + Delta-G solvation = -3823.525497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84264 -40.22368 -38.08327 -36.94910 -36.01707 -34.05257 -32.72400 -31.35294 -30.42448 -29.48093 -27.87913 -26.70120 -25.14373 -24.50155 -23.43562 -22.11165 -21.15115 -20.26704 -19.76432 -18.56842 -18.08866 -17.04378 -16.71757 -16.39071 -15.89571 -15.75923 -15.56002 -14.91538 -14.71659 -14.34870 -14.02352 -13.76394 -13.71130 -13.52056 -13.27919 -12.94179 -12.79401 -12.71092 -12.28106 -12.06296 -11.89322 -11.78612 -11.46846 -11.11909 -11.07334 -10.93700 -10.87439 -10.82372 -10.77791 -10.44174 -10.17169 -10.10182 -9.83539 -9.27697 -9.03956 -8.36482 -8.01729 -7.28120 -5.99103 -4.02028 0.11411 1.16117 1.61182 2.60099 2.77176 3.21917 3.34963 3.38571 3.42466 3.64167 4.38483 4.43430 4.44648 4.61339 4.77690 4.81665 4.84201 4.88054 4.94072 4.97375 5.10252 5.18066 5.20748 5.29902 5.32655 5.37338 5.66180 5.68214 5.76046 5.81582 5.94767 6.05246 6.12539 6.16587 6.24076 6.33622 6.52830 6.63176 6.78408 7.03823 7.28902 7.42880 7.49014 7.70086 7.86718 8.24178 8.48265 8.58241 9.04894 9.63218 11.08016 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.001760 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.856714 B =15907.708747 C =16460.863040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.503 3.497 4 O -0.522 6.522 5 C -0.240 4.240 6 C 0.039 3.961 7 C -0.149 4.149 8 C -0.042 4.042 9 C -0.161 4.161 10 C 0.168 3.832 11 O -0.283 6.283 12 C 0.063 3.937 13 C 0.058 3.942 14 N -0.677 5.677 15 C 0.210 3.790 16 H 0.034 0.966 17 C -0.169 4.169 18 C -0.494 4.494 19 H 0.062 0.938 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.289 1.289 24 H -0.277 1.277 25 H -0.278 1.278 26 C -0.223 4.223 27 C -0.045 4.045 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.324 0.676 40 H 0.004 0.996 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.012 -8.692 -5.704 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.414 6.414 5 C -0.259 4.259 6 C 0.020 3.980 7 C -0.150 4.150 8 C -0.060 4.060 9 C -0.180 4.180 10 C 0.120 3.880 11 O -0.194 6.194 12 C -0.012 4.012 13 C -0.072 4.072 14 N -0.307 5.307 15 C 0.103 3.897 16 H 0.052 0.948 17 C -0.229 4.229 18 C -0.533 4.533 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.727 3.273 23 H -0.215 1.215 24 H -0.203 1.203 25 H -0.204 1.204 26 C -0.242 4.242 27 C -0.063 4.063 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.140 0.860 40 H 0.023 0.977 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.046 -7.599 -5.958 26.842 hybrid contribution 0.449 -0.498 0.775 1.025 sum -24.596 -8.097 -5.183 26.408 Atomic orbital electron populations 1.22870 0.77102 1.03568 1.02377 1.86214 1.23200 1.33208 1.84550 1.20024 0.90108 0.81323 0.73303 1.90882 1.67689 1.35763 1.47074 1.21103 0.90983 1.00078 1.13733 1.22519 0.92859 0.97764 0.84840 1.18758 0.91835 0.93806 1.10555 1.21175 0.93607 0.96821 0.94422 1.20475 0.92938 0.97616 1.06935 1.19513 0.83835 0.93773 0.90852 1.86304 1.13877 1.33213 1.85984 1.23074 0.93188 0.84381 1.00585 1.21973 0.90217 0.98199 0.96825 1.60809 1.20661 1.48156 1.01101 1.19194 0.80274 0.92954 0.97288 0.94793 1.22447 1.06140 0.96839 0.97452 1.21113 0.92363 1.14097 1.25734 0.91946 1.24951 0.96162 0.97129 0.96315 1.69869 0.99304 1.41380 1.43315 0.86554 0.76774 0.82836 0.81170 1.21480 1.20262 1.20397 1.21259 0.95588 0.97107 1.10240 1.21202 0.93024 0.97817 0.94295 0.92219 0.88152 0.92192 0.84323 0.84535 0.84752 0.84295 0.92072 0.92093 0.90415 0.93950 0.85968 0.97719 0.89171 0.95306 0.93028 0.84942 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.45 101.05 1.06 1.28 16 2 O -0.36 -3.30 10.46 -41.12 -0.43 -3.73 16 3 C 0.50 5.26 7.70 32.09 0.25 5.51 16 4 O -0.52 -6.71 15.88 -19.38 -0.31 -7.02 16 5 C -0.24 -2.10 9.33 -39.35 -0.37 -2.47 16 6 C 0.04 0.34 9.41 -37.17 -0.35 -0.01 16 7 C -0.15 -1.40 5.87 -105.05 -0.62 -2.02 16 8 C -0.04 -0.40 9.79 -39.14 -0.38 -0.78 16 9 C -0.16 -1.86 9.97 -39.50 -0.39 -2.25 16 10 C 0.17 2.14 6.70 -38.99 -0.26 1.87 16 11 O -0.28 -4.26 10.07 -18.90 -0.19 -4.45 16 12 C 0.06 0.82 5.01 37.16 0.19 1.01 16 13 C 0.06 0.95 5.87 -3.82 -0.02 0.93 16 14 N -0.68 -13.87 6.18 -107.95 -0.67 -14.53 16 15 C 0.21 5.18 2.57 -68.87 -0.18 5.00 16 16 H 0.03 0.92 7.80 -51.92 -0.41 0.51 16 17 C -0.17 -3.94 8.94 37.16 0.33 -3.61 16 18 C -0.49 -13.61 8.84 -34.44 -0.30 -13.92 16 19 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 20 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 21 N -0.90 -25.50 11.32 55.43 0.63 -24.88 16 22 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C -0.22 -2.35 9.01 -39.50 -0.36 -2.70 16 27 C -0.05 -0.42 9.40 -39.14 -0.37 -0.79 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.14 0.97 6.07 -52.49 -0.32 0.65 16 32 H 0.14 1.13 7.45 -52.49 -0.39 0.74 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.06 0.64 7.64 -51.93 -0.40 0.24 16 36 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 38 H 0.04 0.65 7.43 -51.93 -0.39 0.27 16 39 H 0.32 6.25 8.47 -39.30 -0.33 5.92 16 40 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 41 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 42 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.13 1.19 6.27 -52.49 -0.33 0.86 16 45 H 0.13 0.89 6.16 -52.48 -0.32 0.57 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -31.60 380.23 -8.61 -40.21 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.48 Total: 3.72 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.87 Total: -11.53 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: -0.04 Total: -39.41 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.93 Total: -15.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.60 -8.61 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.605 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds