Wall clock time and date at job start Tue Mar 31 2020 12:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34930 * 117.00157 * 2 1 4 4 O 1.21650 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.41781 * 119.99930 * 179.97438 * 3 2 1 6 6 C 1.35088 * 119.99800 * 180.02562 * 5 3 2 7 7 C 1.46964 * 120.00021 * 179.97438 * 6 5 3 8 8 C 1.39996 * 120.11373 * 179.97438 * 7 6 5 9 9 C 1.37647 * 119.88081 * 180.02562 * 8 7 6 10 10 C 1.39034 * 120.11721 * 0.02562 * 9 8 7 11 11 O 1.35732 * 119.88200 * 179.97438 * 10 9 8 12 12 C 1.42907 * 116.99420 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46615 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47300 * 64.99983 * 13 12 11 15 15 C 1.46903 * 111.00000 * 179.97438 * 14 13 12 16 16 H 1.09007 * 109.47052 * 34.99701 * 15 14 13 17 17 C 1.53000 * 109.47096 * 275.00251 * 15 14 13 18 18 C 1.50694 * 109.47066 * 155.00016 * 15 14 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.39027 * 120.23119 * 0.23498 * 10 9 8 27 27 C 1.37655 * 120.11147 * 359.48311 * 26 10 9 28 28 H 1.09005 * 109.46787 * 60.00444 * 1 2 3 29 29 H 1.09004 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47367 * 300.00284 * 1 2 3 31 31 H 1.07998 * 120.00132 * 359.97438 * 5 3 2 32 32 H 1.07997 * 120.00495 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.05829 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.94216 * 179.97438 * 9 8 7 35 35 H 1.08993 * 109.47094 * 60.00031 * 12 11 10 36 36 H 1.08995 * 109.47167 * 299.99826 * 12 11 10 37 37 H 1.09002 * 109.47131 * 304.99684 * 13 12 11 38 38 H 1.09001 * 109.46935 * 184.99836 * 13 12 11 39 39 H 1.00892 * 111.00121 * 56.04554 * 14 13 12 40 40 H 1.08998 * 109.47089 * 59.99840 * 17 15 14 41 41 H 1.08995 * 109.47131 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.47106 * 299.99893 * 17 15 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.07999 * 119.94697 * 179.74545 * 26 10 9 45 45 H 1.08005 * 120.05768 * 180.25314 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2022 0.0000 4 8 1.3790 2.2225 -0.0005 5 6 3.4574 1.2764 0.0005 6 6 4.0707 2.4800 0.0011 7 6 5.5384 2.5569 0.0022 8 6 6.1764 3.8030 0.0022 9 6 7.5513 3.8695 0.0027 10 6 8.3061 2.7019 0.0027 11 8 9.6616 2.7730 0.0027 12 6 10.3761 1.5353 0.0022 13 6 11.8803 1.8150 0.0029 14 7 12.2543 2.4791 1.2587 15 6 13.6952 2.7632 1.2952 16 1 14.0416 3.0136 0.2924 17 6 14.4456 1.5293 1.8006 18 6 13.9551 3.9234 2.2209 19 1 13.1323 4.4023 2.7309 20 6 15.2434 4.3745 2.4161 21 7 16.2454 3.7917 1.7947 22 14 15.5655 5.8132 3.5631 23 1 17.0221 6.1003 3.6001 24 1 14.8368 7.0103 3.0723 25 1 15.0939 5.4723 4.9293 26 6 7.6775 1.4619 -0.0027 27 6 6.3031 1.3844 0.0026 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0456 0.3706 0.0014 32 1 3.4826 3.3858 0.0007 33 1 5.5909 4.7106 0.0010 34 1 8.0445 4.8303 0.0023 35 1 10.1127 0.9642 -0.8880 36 1 10.1128 0.9634 0.8919 37 1 12.1301 2.4614 -0.8384 38 1 12.4246 0.8749 -0.0871 39 1 11.9744 1.9283 2.0563 40 1 14.2575 0.6901 1.1309 41 1 15.5146 1.7403 1.8281 42 1 14.0992 1.2788 2.8033 43 1 17.1516 4.1092 1.9318 44 1 8.2684 0.5579 -0.0069 45 1 5.8157 0.4206 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:32 Heat of formation + Delta-G solvation = -98.501729 kcal Electronic energy + Delta-G solvation = -24784.549165 eV Core-core repulsion = 20960.213517 eV Total energy + Delta-G solvation = -3824.335649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59895 -41.09265 -38.99715 -37.81330 -37.55669 -34.98187 -34.46443 -32.16769 -31.80182 -30.44772 -28.62716 -28.05847 -27.20194 -25.24674 -24.40692 -23.03439 -22.22055 -22.05492 -20.49494 -19.38874 -18.91955 -18.37918 -17.73923 -17.42890 -17.05785 -16.76371 -16.56895 -16.35979 -15.77636 -15.52139 -15.17116 -14.84496 -14.76882 -14.42247 -14.40955 -13.95657 -13.90346 -13.67867 -13.45771 -13.36976 -12.98223 -12.87914 -12.78163 -12.71261 -12.60773 -12.27305 -12.13881 -12.07825 -11.82120 -11.74073 -11.67994 -11.52733 -11.02906 -10.87425 -10.47177 -10.03577 -8.92826 -8.83479 -8.08871 -6.19443 -0.62857 0.40100 0.82028 1.43524 1.45016 1.52813 1.95608 2.02461 2.28915 2.44757 2.87192 3.19395 3.58435 3.68999 3.73810 3.89891 4.01133 4.17022 4.18443 4.25243 4.26947 4.33042 4.34147 4.42275 4.47234 4.57044 4.72023 4.74121 4.74981 4.88095 4.95168 4.96191 5.05837 5.10371 5.11146 5.32267 5.36292 5.42891 5.43387 5.60121 5.70818 5.76644 5.82957 6.28702 6.50889 6.65502 6.74382 6.85593 6.95886 7.50344 8.96181 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.001760 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.856714 B =15907.708747 C =16460.863040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.501 3.499 4 O -0.553 6.553 5 C -0.237 4.237 6 C 0.042 3.958 7 C -0.147 4.147 8 C -0.041 4.041 9 C -0.179 4.179 10 C 0.141 3.859 11 O -0.316 6.316 12 C 0.069 3.931 13 C 0.057 3.943 14 N -0.686 5.686 15 C 0.214 3.786 16 H 0.002 0.998 17 C -0.156 4.156 18 C -0.516 4.516 19 H 0.051 0.949 20 C 0.009 3.991 21 N -0.922 5.922 22 Si 0.958 3.042 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.272 1.272 26 C -0.223 4.223 27 C -0.045 4.045 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.057 0.943 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.332 0.668 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.150 0.850 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.756 -10.109 -5.445 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.351 3.649 4 O -0.448 6.448 5 C -0.256 4.256 6 C 0.023 3.977 7 C -0.147 4.147 8 C -0.059 4.059 9 C -0.198 4.198 10 C 0.094 3.906 11 O -0.229 6.229 12 C -0.005 4.005 13 C -0.072 4.072 14 N -0.316 5.316 15 C 0.106 3.894 16 H 0.020 0.980 17 C -0.215 4.215 18 C -0.554 4.554 19 H 0.069 0.931 20 C -0.189 4.189 21 N -0.562 5.562 22 Si 0.784 3.216 23 H -0.209 1.209 24 H -0.202 1.202 25 H -0.197 1.197 26 C -0.241 4.241 27 C -0.062 4.062 28 H 0.076 0.924 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.149 0.851 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.167 0.833 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -26.814 -9.042 -5.702 28.866 hybrid contribution 0.843 -0.098 0.646 1.067 sum -25.971 -9.140 -5.056 27.992 Atomic orbital electron populations 1.23144 0.75718 1.05583 1.02224 1.86208 1.24650 1.32508 1.84114 1.20343 0.90723 0.81231 0.72567 1.90869 1.68465 1.36753 1.48687 1.21252 0.90333 1.00872 1.13113 1.22498 0.92412 0.98066 0.84730 1.18903 0.92166 0.93908 1.09748 1.21413 0.92927 0.98057 0.93504 1.20599 0.93867 0.97333 1.07999 1.19751 0.82975 0.95086 0.92742 1.86233 1.15415 1.34292 1.86981 1.23017 0.90509 0.84256 1.02753 1.22012 0.93151 0.97974 0.94070 1.60623 1.17931 1.49867 1.03197 1.18948 0.82886 0.92836 0.94773 0.98019 1.22232 1.03848 0.97175 0.98264 1.21433 0.92304 1.15357 1.26349 0.93056 1.25690 0.96009 0.99487 0.97707 1.69994 0.99495 1.42444 1.44254 0.85609 0.76737 0.79761 0.79463 1.20890 1.20155 1.19680 1.21447 0.96287 0.96754 1.09638 1.21529 0.92603 0.98951 0.93132 0.92361 0.85092 0.92411 0.82266 0.84392 0.82627 0.85088 0.88998 0.90635 0.92244 0.92442 0.85121 0.95082 0.92100 0.94874 0.93026 0.83265 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.45 113.37 1.18 1.49 16 2 O -0.36 -5.98 10.46 -58.46 -0.61 -6.59 16 3 C 0.50 9.68 7.70 68.70 0.53 10.21 16 4 O -0.55 -13.76 15.88 19.34 0.31 -13.45 16 5 C -0.24 -3.57 9.33 22.42 0.21 -3.36 16 6 C 0.04 0.64 9.41 23.83 0.22 0.86 16 7 C -0.15 -2.44 5.87 -20.14 -0.12 -2.56 16 8 C -0.04 -0.73 9.79 22.56 0.22 -0.51 16 9 C -0.18 -4.11 9.97 22.32 0.22 -3.89 16 10 C 0.14 3.48 6.70 22.65 0.15 3.64 16 11 O -0.32 -9.47 10.07 -90.56 -0.91 -10.38 16 12 C 0.07 1.70 5.01 71.98 0.36 2.06 16 13 C 0.06 1.85 5.87 86.30 0.51 2.36 16 14 N -0.69 -28.14 6.18 -495.44 -3.06 -31.20 16 15 C 0.21 10.72 2.57 44.17 0.11 10.83 16 16 H 0.00 0.10 7.80 -2.38 -0.02 0.08 16 17 C -0.16 -7.24 8.94 71.98 0.64 -6.60 16 18 C -0.52 -28.90 8.84 25.60 0.23 -28.67 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.01 0.51 5.30 84.66 0.45 0.96 16 21 N -0.92 -53.07 11.32 21.45 0.24 -52.82 16 22 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.22 -4.18 9.01 22.32 0.20 -3.97 16 27 C -0.04 -0.69 9.40 22.56 0.21 -0.48 16 28 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 29 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.16 1.66 6.07 -2.91 -0.02 1.64 16 32 H 0.14 2.08 7.45 -2.91 -0.02 2.06 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.09 1.67 7.64 -2.39 -0.02 1.65 16 36 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16 37 H 0.06 2.11 8.06 -2.39 -0.02 2.09 16 38 H 0.06 1.68 7.43 -2.39 -0.02 1.66 16 39 H 0.33 12.60 8.47 -89.70 -0.76 11.84 16 40 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 41 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 42 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 43 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.15 2.20 6.27 -2.91 -0.02 2.18 16 45 H 0.16 1.52 6.16 -2.91 -0.02 1.50 16 Total: -1.00 -69.25 380.23 3.57 -65.68 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.24 Total: 20.03 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.34 Total: -17.63 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.82 Total: -84.02 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.22 Total: -30.43 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -69.25 3.57 -65.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.820 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds