Wall clock time and date at job start Tue Mar 31 2020 12:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35990 * 117.00145 * 2 1 4 4 C 1.38613 * 120.20610 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.16244 * 180.02562 * 4 3 2 6 6 C 1.38388 * 120.11736 * 0.39153 * 5 4 3 7 7 C 1.38121 * 119.73721 * 359.91001 * 6 5 4 8 8 C 1.37806 * 120.56768 * 359.35028 * 7 6 5 9 9 O 1.36244 * 120.35664 * 182.52559 * 8 7 6 10 10 C 1.43136 * 115.61273 * 70.32071 * 9 8 7 11 11 C 1.51432 * 110.93686 * 273.25870 * 10 9 8 12 12 C 1.52145 * 113.44745 * 65.43354 * 11 10 9 13 13 C 1.51656 * 119.98406 * 179.17727 * 7 6 5 14 14 H 1.09001 * 109.72851 * 351.57513 * 13 7 6 15 15 N 1.46503 * 109.59922 * 231.18644 * 13 7 6 16 16 C 1.34774 * 120.00214 * 155.41722 * 15 13 7 17 17 O 1.21284 * 119.99955 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99836 * 179.97438 * 16 15 13 19 19 H 1.08997 * 109.47063 * 299.99138 * 18 16 15 20 20 C 1.52998 * 109.47476 * 59.99925 * 18 16 15 21 21 C 1.50701 * 109.46609 * 179.97438 * 18 16 15 22 22 H 1.07996 * 120.00265 * 0.02562 * 21 18 16 23 23 C 1.37876 * 119.99685 * 179.97438 * 21 18 16 24 24 N 1.31513 * 120.00543 * 0.02562 * 23 21 18 25 25 Si 1.86806 * 120.00154 * 179.97438 * 23 21 18 26 26 H 1.48504 * 109.46707 * 60.00170 * 25 23 21 27 27 H 1.48495 * 109.47432 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47103 * 300.00112 * 25 23 21 29 29 H 1.09000 * 109.47377 * 60.00078 * 1 2 3 30 30 H 1.09001 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47210 * 299.99647 * 1 2 3 32 32 H 1.07994 * 119.91947 * 0.07696 * 4 3 2 33 33 H 1.08003 * 119.94355 * 180.42419 * 5 4 3 34 34 H 1.08000 * 120.13510 * 179.91841 * 6 5 4 35 35 H 1.08995 * 109.18346 * 152.88317 * 10 9 8 36 36 H 1.09004 * 109.18281 * 33.63115 * 10 9 8 37 37 H 1.09001 * 108.69070 * 304.40087 * 11 10 9 38 38 H 1.09004 * 108.68921 * 186.45974 * 11 10 9 39 39 H 1.08998 * 109.21316 * 52.81498 * 12 11 10 40 40 H 1.08999 * 109.21637 * 172.14037 * 12 11 10 41 41 H 0.97001 * 119.99814 * 335.40980 * 15 13 7 42 42 H 1.08995 * 109.47441 * 179.97438 * 20 18 16 43 43 H 1.09000 * 109.46934 * 299.99733 * 20 18 16 44 44 H 1.09006 * 109.47448 * 59.99466 * 20 18 16 45 45 H 0.96997 * 120.01120 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2957 2.3769 -0.0005 5 6 1.9243 3.6082 -0.0011 6 6 3.3061 3.6823 -0.0093 7 6 4.0545 2.5215 -0.0150 8 6 3.4371 1.2895 0.0008 9 8 4.1794 0.1480 0.0469 10 6 4.8517 -0.1034 1.2852 11 6 6.2013 0.5827 1.3171 12 6 6.1091 2.1013 1.2990 13 6 5.5690 2.5962 -0.0428 14 1 5.8836 3.6270 -0.2058 15 7 6.0830 1.7492 -1.1220 16 6 7.2878 2.0094 -1.6672 17 8 7.9462 2.9451 -1.2647 18 6 7.8167 1.1378 -2.7770 19 1 7.9047 0.1110 -2.4219 20 6 6.8549 1.1858 -3.9658 21 6 9.1714 1.6389 -3.2068 22 1 9.6060 2.5019 -2.7245 23 6 9.8564 0.9949 -4.2153 24 7 9.3275 -0.0563 -4.8025 25 14 11.5354 1.6164 -4.7488 26 1 12.4693 1.5713 -3.5951 27 1 12.0573 0.7568 -5.8414 28 1 11.4145 3.0149 -5.2335 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2171 2.3228 0.0003 33 1 1.3359 4.5138 0.0054 34 1 3.7975 4.6441 -0.0110 35 1 4.9931 -1.1775 1.4045 36 1 4.2405 0.2701 2.1069 37 1 6.7791 0.2575 0.4520 38 1 6.7280 0.2755 2.2207 39 1 5.4430 2.4297 2.0969 40 1 7.1006 2.5229 1.4641 41 1 5.5563 1.0011 -1.4441 42 1 7.2377 0.5558 -4.7686 43 1 5.8749 0.8236 -3.6552 44 1 6.7670 2.2127 -4.3209 45 1 9.8095 -0.5096 -5.5117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893766223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:36 Heat of formation + Delta-G solvation = -86.899997 kcal Electronic energy + Delta-G solvation = -28020.636544 eV Core-core repulsion = 24196.803984 eV Total energy + Delta-G solvation = -3823.832560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08428 -39.27799 -38.17524 -37.09748 -35.20819 -33.62264 -32.52724 -31.24091 -30.05046 -29.89440 -27.71604 -26.95756 -25.04858 -24.87601 -22.82637 -22.24051 -21.35047 -20.25647 -19.03118 -18.30945 -17.39244 -16.83006 -16.19690 -16.07942 -15.89414 -15.39432 -15.05153 -14.90602 -14.71802 -14.55113 -14.24539 -13.84530 -13.50477 -13.12459 -12.99043 -12.80885 -12.47536 -12.36652 -12.25083 -11.94402 -11.54236 -11.48727 -11.34451 -11.00194 -10.93004 -10.73710 -10.61868 -10.59759 -10.53801 -10.15157 -9.97837 -9.88837 -8.89852 -8.85902 -8.48917 -8.31329 -8.22780 -8.22027 -5.95020 -3.98149 1.02212 1.21576 3.04542 3.31920 3.40858 3.43073 3.48543 3.75551 3.84138 4.14875 4.50763 4.54414 4.64710 4.85472 4.89983 4.91164 4.98135 5.00930 5.10428 5.23409 5.25512 5.27219 5.37666 5.38679 5.49356 5.60716 5.75595 5.96589 5.98260 6.05231 6.19035 6.23784 6.34902 6.39670 6.48722 6.51898 6.75281 6.95737 6.98940 7.04661 7.23743 7.55839 7.58919 7.85731 8.08449 8.27088 8.58840 9.10364 9.35961 9.66957 11.12459 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.003536 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.727924 B = 7916.222426 C = 8118.511264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.114 3.886 4 C -0.200 4.200 5 C -0.087 4.087 6 C -0.129 4.129 7 C -0.079 4.079 8 C 0.077 3.923 9 O -0.312 6.312 10 C 0.070 3.930 11 C -0.154 4.154 12 C -0.127 4.127 13 C 0.188 3.812 14 H 0.096 0.904 15 N -0.732 5.732 16 C 0.521 3.479 17 O -0.550 6.550 18 C 0.031 3.969 19 H 0.052 0.948 20 C -0.132 4.132 21 C -0.499 4.499 22 H 0.073 0.927 23 C 0.058 3.942 24 N -0.896 5.896 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.404 0.596 42 H 0.092 0.908 43 H 0.012 0.988 44 H 0.029 0.971 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 1.348 13.133 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.068 3.932 4 C -0.219 4.219 5 C -0.105 4.105 6 C -0.148 4.148 7 C -0.080 4.080 8 C 0.032 3.968 9 O -0.228 6.228 10 C -0.004 4.004 11 C -0.192 4.192 12 C -0.166 4.166 13 C 0.083 3.917 14 H 0.114 0.886 15 N -0.387 5.387 16 C 0.311 3.689 17 O -0.426 6.426 18 C 0.010 3.990 19 H 0.069 0.931 20 C -0.190 4.190 21 C -0.538 4.538 22 H 0.091 0.909 23 C -0.142 4.142 24 N -0.536 5.536 25 Si 0.728 3.272 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.111 0.889 43 H 0.031 0.969 44 H 0.049 0.951 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.885 1.543 13.129 23.052 hybrid contribution 0.253 0.219 -0.298 0.448 sum -18.633 1.763 12.831 22.692 Atomic orbital electron populations 1.23076 0.78760 1.03976 1.01152 1.86198 1.20879 1.26046 1.88462 1.19252 0.91061 0.84922 0.97982 1.21127 0.99950 0.91897 1.08926 1.20952 0.94397 0.97002 0.98196 1.20905 0.93533 0.97726 1.02642 1.20319 0.96353 0.92152 0.99158 1.17701 0.86642 0.86573 1.05897 1.86378 1.63184 1.37916 1.35322 1.22532 0.92472 1.00720 0.84710 1.21655 0.97970 0.95696 1.03892 1.21739 1.02321 0.95941 0.96597 1.19813 0.86573 0.97106 0.88254 0.88617 1.46459 1.21198 1.33510 1.37574 1.21973 0.78958 0.85218 0.82760 1.90508 1.57718 1.31292 1.63098 1.18844 0.95762 0.95044 0.89381 0.93077 1.21728 0.95106 1.00715 1.01423 1.21112 1.00452 1.14061 1.18172 0.90878 1.24947 0.98133 0.94932 0.96229 1.69869 1.38139 1.20124 1.25466 0.86530 0.84018 0.78677 0.78020 1.20257 1.21443 1.20259 0.92648 0.88201 0.92849 0.85150 0.85401 0.85067 0.88513 0.93091 0.89761 0.90991 0.91848 0.90360 0.75931 0.88928 0.96852 0.95137 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.82 101.05 0.99 1.18 16 2 O -0.30 -3.69 10.28 -34.20 -0.35 -4.04 16 3 C 0.11 1.45 6.71 -39.05 -0.26 1.19 16 4 C -0.20 -2.06 9.04 -39.44 -0.36 -2.42 16 5 C -0.09 -0.87 10.05 -39.52 -0.40 -1.27 16 6 C -0.13 -1.52 9.69 -39.57 -0.38 -1.90 16 7 C -0.08 -1.09 4.80 -104.35 -0.50 -1.59 16 8 C 0.08 1.09 5.27 -39.35 -0.21 0.89 16 9 O -0.31 -4.68 8.15 -35.01 -0.29 -4.96 16 10 C 0.07 0.87 6.49 36.37 0.24 1.11 16 11 C -0.15 -2.08 5.34 -27.96 -0.15 -2.23 16 12 C -0.13 -1.79 5.52 -27.23 -0.15 -1.94 16 13 C 0.19 2.99 2.62 -68.67 -0.18 2.81 16 14 H 0.10 1.62 7.38 -51.93 -0.38 1.24 16 15 N -0.73 -13.77 3.17 -54.53 -0.17 -13.94 16 16 C 0.52 12.20 7.02 -10.99 -0.08 12.13 16 17 O -0.55 -14.36 15.12 5.55 0.08 -14.28 16 18 C 0.03 0.79 2.64 -92.92 -0.25 0.55 16 19 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 20 C -0.13 -3.20 8.87 37.16 0.33 -2.87 16 21 C -0.50 -14.49 8.37 -34.44 -0.29 -14.78 16 22 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 23 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 24 N -0.90 -25.76 11.32 55.43 0.63 -25.14 16 25 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 32 H 0.13 0.98 6.31 -52.49 -0.33 0.65 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.34 7.99 -52.49 -0.42 0.92 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 37 H 0.08 1.37 6.88 -51.93 -0.36 1.02 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.76 7.89 -51.93 -0.41 0.35 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.40 7.48 6.09 -40.82 -0.25 7.23 16 42 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 43 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -32.97 357.82 -7.97 -40.94 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.51 Total: 6.41 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.73 Total: -7.60 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.45 Total: -39.08 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.55 Total: -23.28 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.97 -7.97 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893766223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.958 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds