Wall clock time and date at job start Tue Mar 31 2020 12:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35990 * 117.00145 * 2 1 4 4 C 1.38613 * 120.20610 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.16244 * 180.02562 * 4 3 2 6 6 C 1.38388 * 120.11736 * 0.39153 * 5 4 3 7 7 C 1.38121 * 119.73721 * 359.91001 * 6 5 4 8 8 C 1.37806 * 120.56768 * 359.35028 * 7 6 5 9 9 O 1.36244 * 120.35664 * 182.52559 * 8 7 6 10 10 C 1.43136 * 115.61273 * 70.32071 * 9 8 7 11 11 C 1.51432 * 110.93686 * 273.25870 * 10 9 8 12 12 C 1.52145 * 113.44745 * 65.43354 * 11 10 9 13 13 C 1.51656 * 119.98406 * 179.17727 * 7 6 5 14 14 H 1.09001 * 109.72851 * 351.57513 * 13 7 6 15 15 N 1.46503 * 109.59922 * 231.18644 * 13 7 6 16 16 C 1.34774 * 120.00214 * 155.41722 * 15 13 7 17 17 O 1.21284 * 119.99955 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99836 * 179.97438 * 16 15 13 19 19 H 1.08997 * 109.47063 * 299.99138 * 18 16 15 20 20 C 1.52998 * 109.47476 * 59.99925 * 18 16 15 21 21 C 1.50701 * 109.46609 * 179.97438 * 18 16 15 22 22 H 1.07996 * 120.00265 * 0.02562 * 21 18 16 23 23 C 1.37876 * 119.99685 * 179.97438 * 21 18 16 24 24 N 1.31513 * 120.00543 * 0.02562 * 23 21 18 25 25 Si 1.86806 * 120.00154 * 179.97438 * 23 21 18 26 26 H 1.48504 * 109.46707 * 60.00170 * 25 23 21 27 27 H 1.48495 * 109.47432 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47103 * 300.00112 * 25 23 21 29 29 H 1.09000 * 109.47377 * 60.00078 * 1 2 3 30 30 H 1.09001 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47210 * 299.99647 * 1 2 3 32 32 H 1.07994 * 119.91947 * 0.07696 * 4 3 2 33 33 H 1.08003 * 119.94355 * 180.42419 * 5 4 3 34 34 H 1.08000 * 120.13510 * 179.91841 * 6 5 4 35 35 H 1.08995 * 109.18346 * 152.88317 * 10 9 8 36 36 H 1.09004 * 109.18281 * 33.63115 * 10 9 8 37 37 H 1.09001 * 108.69070 * 304.40087 * 11 10 9 38 38 H 1.09004 * 108.68921 * 186.45974 * 11 10 9 39 39 H 1.08998 * 109.21316 * 52.81498 * 12 11 10 40 40 H 1.08999 * 109.21637 * 172.14037 * 12 11 10 41 41 H 0.97001 * 119.99814 * 335.40980 * 15 13 7 42 42 H 1.08995 * 109.47441 * 179.97438 * 20 18 16 43 43 H 1.09000 * 109.46934 * 299.99733 * 20 18 16 44 44 H 1.09006 * 109.47448 * 59.99466 * 20 18 16 45 45 H 0.96997 * 120.01120 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2957 2.3769 -0.0005 5 6 1.9243 3.6082 -0.0011 6 6 3.3061 3.6823 -0.0093 7 6 4.0545 2.5215 -0.0150 8 6 3.4371 1.2895 0.0008 9 8 4.1794 0.1480 0.0469 10 6 4.8517 -0.1034 1.2852 11 6 6.2013 0.5827 1.3171 12 6 6.1091 2.1013 1.2990 13 6 5.5690 2.5962 -0.0428 14 1 5.8836 3.6270 -0.2058 15 7 6.0830 1.7492 -1.1220 16 6 7.2878 2.0094 -1.6672 17 8 7.9462 2.9451 -1.2647 18 6 7.8167 1.1378 -2.7770 19 1 7.9047 0.1110 -2.4219 20 6 6.8549 1.1858 -3.9658 21 6 9.1714 1.6389 -3.2068 22 1 9.6060 2.5019 -2.7245 23 6 9.8564 0.9949 -4.2153 24 7 9.3275 -0.0563 -4.8025 25 14 11.5354 1.6164 -4.7488 26 1 12.4693 1.5713 -3.5951 27 1 12.0573 0.7568 -5.8414 28 1 11.4145 3.0149 -5.2335 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2171 2.3228 0.0003 33 1 1.3359 4.5138 0.0054 34 1 3.7975 4.6441 -0.0110 35 1 4.9931 -1.1775 1.4045 36 1 4.2405 0.2701 2.1069 37 1 6.7791 0.2575 0.4520 38 1 6.7280 0.2755 2.2207 39 1 5.4430 2.4297 2.0969 40 1 7.1006 2.5229 1.4641 41 1 5.5563 1.0011 -1.4441 42 1 7.2377 0.5558 -4.7686 43 1 5.8749 0.8236 -3.6552 44 1 6.7670 2.2127 -4.3209 45 1 9.8095 -0.5096 -5.5117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893766223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:35 Heat of formation + Delta-G solvation = -106.898505 kcal Electronic energy + Delta-G solvation = -28021.503744 eV Core-core repulsion = 24196.803984 eV Total energy + Delta-G solvation = -3824.699760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11638 -40.57688 -39.50478 -38.00417 -36.54973 -35.72701 -33.87823 -32.75071 -31.63856 -30.82585 -28.60403 -27.82581 -27.20387 -26.02507 -24.44661 -23.36584 -22.32659 -21.58395 -20.64923 -19.32763 -18.38082 -18.31407 -17.78034 -17.61760 -16.85554 -16.61408 -16.38245 -16.23436 -16.01445 -15.77639 -15.38287 -15.32657 -14.72967 -14.62286 -14.31673 -14.21235 -13.78315 -13.51949 -13.31667 -13.21727 -12.95996 -12.85592 -12.68823 -12.59950 -12.45002 -12.24418 -12.15926 -12.00213 -11.89020 -11.76791 -11.58921 -11.06278 -11.00022 -10.60301 -10.31404 -9.94503 -9.69097 -9.09564 -8.13529 -6.24800 0.11694 0.33250 1.41147 1.43369 1.51817 1.94933 2.30529 2.34726 2.45693 2.55252 2.96996 3.15509 3.47566 3.82843 3.90321 3.92180 4.01545 4.14148 4.26929 4.34523 4.38615 4.41622 4.43506 4.44664 4.58401 4.63569 4.68504 4.72538 4.76944 4.87720 4.94139 4.96778 5.01074 5.10804 5.19785 5.25678 5.35098 5.46280 5.48335 5.64219 5.68719 5.75018 5.93534 6.17092 6.20917 6.64317 6.75028 6.87664 7.40581 7.56150 8.92425 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.003536 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.727924 B = 7916.222426 C = 8118.511264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.103 3.897 4 C -0.191 4.191 5 C -0.078 4.078 6 C -0.136 4.136 7 C -0.093 4.093 8 C 0.053 3.947 9 O -0.334 6.334 10 C 0.071 3.929 11 C -0.151 4.151 12 C -0.123 4.123 13 C 0.185 3.815 14 H 0.081 0.919 15 N -0.712 5.712 16 C 0.525 3.475 17 O -0.584 6.584 18 C 0.026 3.974 19 H 0.035 0.965 20 C -0.117 4.117 21 C -0.528 4.528 22 H 0.051 0.949 23 C 0.018 3.982 24 N -0.913 5.913 25 Si 0.958 3.042 26 H -0.275 1.275 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.406 0.594 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.023 0.977 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.947 1.821 13.883 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.057 3.943 4 C -0.209 4.209 5 C -0.096 4.096 6 C -0.155 4.155 7 C -0.095 4.095 8 C 0.009 3.991 9 O -0.251 6.251 10 C -0.003 4.003 11 C -0.188 4.188 12 C -0.162 4.162 13 C 0.080 3.920 14 H 0.099 0.901 15 N -0.366 5.366 16 C 0.314 3.686 17 O -0.463 6.463 18 C 0.005 3.995 19 H 0.053 0.947 20 C -0.175 4.175 21 C -0.566 4.566 22 H 0.069 0.931 23 C -0.181 4.181 24 N -0.552 5.552 25 Si 0.784 3.216 26 H -0.201 1.201 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.181 0.819 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.244 0.756 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.339 1.996 13.893 25.541 hybrid contribution 0.855 0.040 -0.490 0.987 sum -20.484 2.036 13.403 24.563 Atomic orbital electron populations 1.23386 0.76408 1.05541 1.02474 1.86162 1.23380 1.26137 1.88437 1.19392 0.90732 0.86016 0.98173 1.21518 1.01461 0.91033 1.06928 1.21340 0.93709 0.98326 0.96186 1.21138 0.94587 0.97376 1.02407 1.20119 0.94616 0.93184 1.01543 1.17920 0.87604 0.86240 1.07386 1.86337 1.63622 1.38558 1.36538 1.22618 0.91653 1.01441 0.84624 1.21635 0.98670 0.95235 1.03302 1.21693 1.01724 0.96381 0.96362 1.19952 0.88656 0.95562 0.87805 0.90058 1.46207 1.19445 1.33412 1.37522 1.21450 0.80148 0.84482 0.82530 1.90481 1.59036 1.32631 1.64198 1.18767 0.95408 0.94464 0.90894 0.94706 1.21527 0.95983 0.99880 1.00106 1.21249 1.02317 1.14022 1.19054 0.93082 1.25642 1.01445 0.95021 0.95956 1.69959 1.39261 1.20492 1.25462 0.85614 0.79832 0.78316 0.77876 1.20070 1.19940 1.20062 0.91641 0.86753 0.91035 0.82025 0.81920 0.84047 0.87173 0.91496 0.93209 0.88945 0.89182 0.92286 0.75613 0.90946 0.94135 0.95752 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 113.37 1.11 1.30 16 2 O -0.33 -7.36 10.28 -79.59 -0.82 -8.18 16 3 C 0.10 2.41 6.71 22.61 0.15 2.56 16 4 C -0.19 -3.24 9.04 22.36 0.20 -3.04 16 5 C -0.08 -1.27 10.05 22.31 0.22 -1.04 16 6 C -0.14 -2.93 9.69 22.28 0.22 -2.71 16 7 C -0.09 -2.52 4.80 -19.69 -0.09 -2.61 16 8 C 0.05 1.46 5.27 22.42 0.12 1.58 16 9 O -0.33 -9.93 8.15 -82.49 -0.67 -10.60 16 10 C 0.07 1.70 6.49 71.47 0.46 2.17 16 11 C -0.15 -4.07 5.34 29.80 0.16 -3.91 16 12 C -0.12 -3.49 5.52 30.27 0.17 -3.32 16 13 C 0.18 5.96 2.62 44.51 0.12 6.08 16 14 H 0.08 2.84 7.38 -2.39 -0.02 2.82 16 15 N -0.71 -27.64 3.17 -444.82 -1.41 -29.05 16 16 C 0.52 25.62 7.02 87.66 0.62 26.23 16 17 O -0.58 -31.91 15.12 -3.04 -0.05 -31.96 16 18 C 0.03 1.39 2.64 -12.29 -0.03 1.35 16 19 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 20 C -0.12 -5.81 8.87 71.98 0.64 -5.17 16 21 C -0.53 -31.71 8.37 25.60 0.21 -31.50 16 22 H 0.05 3.24 6.75 -2.91 -0.02 3.22 16 23 C 0.02 1.06 5.30 84.65 0.45 1.51 16 24 N -0.91 -53.08 11.32 21.45 0.24 -52.84 16 25 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 29 H 0.06 0.63 7.67 -2.39 -0.02 0.61 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.57 7.67 -2.39 -0.02 0.55 16 32 H 0.16 1.66 6.31 -2.91 -0.02 1.64 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 2.65 7.99 -2.91 -0.02 2.63 16 35 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 1.39 7.90 -2.39 -0.02 1.37 16 37 H 0.05 1.69 6.88 -2.39 -0.02 1.67 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 2.06 7.89 -2.39 -0.02 2.04 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.41 15.45 6.09 -92.71 -0.56 14.88 16 42 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 43 H 0.04 1.73 7.56 -2.39 -0.02 1.71 16 44 H 0.02 1.18 8.14 -2.38 -0.02 1.17 16 45 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -73.52 357.82 4.49 -69.04 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.44 Total: 26.02 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.72 Total: -10.53 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.17 Total: -81.89 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.54 Total: -50.73 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.52 4.49 -69.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893766223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.863 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds