Wall clock time and date at job start Tue Mar 31 2020 12:31:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34223 * 116.99892 * 2 1
4 4 O 1.20827 * 120.00166 * 0.02562 * 3 2 1
5 5 C 1.50704 * 120.00048 * 180.02562 * 3 2 1
6 6 H 1.08992 * 109.76801 * 54.25152 * 5 3 2
7 7 C 1.53424 * 109.77518 * 293.44702 * 5 3 2
8 8 N 1.46751 * 108.59407 * 177.14054 * 7 5 3
9 9 C 1.46902 * 111.00306 * 285.48853 * 8 7 5
10 10 C 1.53004 * 109.46895 * 284.21992 * 9 8 7
11 11 H 1.08995 * 109.47177 * 55.20716 * 10 9 8
12 12 C 1.53005 * 109.47004 * 295.20748 * 10 9 8
13 13 C 1.53001 * 109.47214 * 175.21370 * 10 9 8
14 14 C 1.50691 * 109.47484 * 184.99908 * 13 10 9
15 15 H 1.08009 * 120.00105 * 359.97438 * 14 13 10
16 16 C 1.37878 * 120.00584 * 179.97438 * 14 13 10
17 17 N 1.31517 * 119.99326 * 359.97438 * 16 14 13
18 18 Si 1.86802 * 120.00393 * 180.02562 * 16 14 13
19 19 H 1.48493 * 109.47077 * 59.99543 * 18 16 14
20 20 H 1.48496 * 109.46892 * 179.97438 * 18 16 14
21 21 H 1.48497 * 109.46602 * 299.99853 * 18 16 14
22 22 C 1.39849 * 112.12307 * 50.27062 * 8 7 5
23 23 C 1.39146 * 118.60212 * 160.09788 * 22 8 7
24 24 C 1.38064 * 120.23996 * 179.70361 * 23 22 8
25 25 C 1.38259 * 120.11940 * 0.02974 * 24 23 22
26 26 C 1.38168 * 120.02797 * 0.07436 * 25 24 23
27 27 C 1.38775 * 120.20530 * 359.94202 * 26 25 24
28 28 O 1.36150 * 118.74434 * 179.74760 * 27 26 25
29 29 H 1.08998 * 109.47135 * 59.99773 * 1 2 3
30 30 H 1.09007 * 109.46774 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.46825 * 299.99597 * 1 2 3
32 32 H 1.09001 * 109.61695 * 296.87996 * 7 5 3
33 33 H 1.08999 * 109.61561 * 57.22893 * 7 5 3
34 34 H 1.09000 * 109.47045 * 44.21251 * 9 8 7
35 35 H 1.09001 * 109.47319 * 164.21846 * 9 8 7
36 36 H 1.09003 * 109.47030 * 304.80741 * 12 10 9
37 37 H 1.08999 * 109.46860 * 64.80416 * 12 10 9
38 38 H 1.08998 * 109.46981 * 184.80416 * 12 10 9
39 39 H 1.09004 * 109.46370 * 304.99831 * 13 10 9
40 40 H 1.08997 * 109.47196 * 64.99433 * 13 10 9
41 41 H 0.97008 * 119.99428 * 180.02562 * 17 16 14
42 42 H 1.08004 * 119.87497 * 359.72327 * 23 22 8
43 43 H 1.08001 * 119.93474 * 180.02562 * 24 23 22
44 44 H 1.07998 * 119.98092 * 180.35604 * 25 24 23
45 45 H 1.07998 * 119.90225 * 179.91558 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 1 3.9655 0.6959 -0.8333
7 6 4.1153 0.7281 1.3236
8 7 5.5816 0.7531 1.2682
9 6 6.0942 -0.3195 0.4052
10 6 5.9966 -1.6571 1.1416
11 1 4.9690 -1.8187 1.4669
12 6 6.9203 -1.6364 2.3612
13 6 6.4181 -2.7886 0.2019
14 6 6.2057 -4.1147 0.8853
15 1 5.8100 -4.1473 1.8898
16 6 6.5164 -5.2865 0.2286
17 7 6.9978 -5.2468 -0.9947
18 14 6.2524 -6.9304 1.0756
19 1 4.8168 -7.0834 1.4226
20 1 6.6605 -8.0285 0.1630
21 1 7.0697 -6.9858 2.3142
22 6 6.0722 1.9989 0.8645
23 6 7.3939 2.3209 1.1571
24 6 7.9150 3.5391 0.7689
25 6 7.1250 4.4462 0.0874
26 6 5.8109 4.1356 -0.2054
27 6 5.2795 2.9134 0.1815
28 8 3.9797 2.6403 -0.1178
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 3.7695 1.3513 2.1483
33 1 3.7693 -0.2953 1.4685
34 1 5.5025 -0.3642 -0.5091
35 1 7.1356 -0.1178 0.1546
36 1 7.9340 -1.3903 2.0450
37 1 6.5689 -0.8871 3.0704
38 1 6.9161 -2.6171 2.8369
39 1 5.8182 -2.7482 -0.7073
40 1 7.4719 -2.6758 -0.0529
41 1 7.2160 -6.0712 -1.4570
42 1 8.0144 1.6152 1.6894
43 1 8.9416 3.7838 0.9982
44 1 7.5366 5.3961 -0.2202
45 1 5.1952 4.8462 -0.7367
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000895918241.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:18
Heat of formation + Delta-G solvation = -89.007070 kcal
Electronic energy + Delta-G solvation = -27494.846500 eV
Core-core repulsion = 23670.922571 eV
Total energy + Delta-G solvation = -3823.923929 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.60683 -40.33043 -37.66385 -37.32463 -36.51135 -34.48537 -32.11662 -31.56908
-30.43548 -28.64981 -27.65784 -26.73513 -25.82100 -24.67480 -23.04330 -22.31220
-21.78101 -20.25735 -19.08033 -18.24276 -17.96584 -17.28688 -16.93170 -16.57806
-16.10817 -15.79479 -15.14502 -14.89051 -14.63816 -14.42263 -14.39887 -13.84690
-13.73195 -13.42431 -13.35141 -13.07949 -12.57103 -12.40743 -12.25182 -12.01007
-11.68255 -11.57871 -11.47975 -11.36700 -11.16708 -11.02403 -10.88585 -10.85216
-10.67382 -10.41479 -10.33552 -9.74389 -9.49767 -9.21712 -8.97505 -8.44454
-8.36259 -7.92931 -6.01215 -4.02656 1.24863 1.33935 1.86496 1.95508
3.29276 3.32155 3.37049 3.39075 3.56710 3.76175 4.22547 4.43766
4.46432 4.60609 4.70617 4.91178 4.96385 4.98687 5.05993 5.25433
5.28763 5.32151 5.34228 5.36189 5.45964 5.61730 5.71361 5.86132
5.98261 6.04891 6.12974 6.14558 6.25448 6.37826 6.45722 6.56365
6.60061 6.82790 6.89549 7.02669 7.13022 7.16691 7.37506 7.47548
7.62943 7.77195 7.97713 8.40875 9.03017 9.61017 11.10184
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.010718 B = 0.004178 C = 0.003191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2611.874416 B = 6700.423942 C = 8772.147586
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.346 6.346
3 C 0.476 3.524
4 O -0.487 6.487
5 C 0.060 3.940
6 H 0.117 0.883
7 C 0.030 3.970
8 N -0.475 5.475
9 C 0.056 3.944
10 C -0.080 4.080
11 H 0.059 0.941
12 C -0.125 4.125
13 C 0.028 3.972
14 C -0.514 4.514
15 H 0.056 0.944
16 C 0.057 3.943
17 N -0.896 5.896
18 Si 0.890 3.110
19 H -0.277 1.277
20 H -0.288 1.288
21 H -0.277 1.277
22 C 0.037 3.963
23 C -0.083 4.083
24 C -0.135 4.135
25 C -0.104 4.104
26 C -0.128 4.128
27 C 0.082 3.918
28 O -0.290 6.290
29 H 0.064 0.936
30 H 0.108 0.892
31 H 0.065 0.935
32 H 0.096 0.904
33 H 0.119 0.881
34 H 0.041 0.959
35 H 0.080 0.920
36 H 0.039 0.961
37 H 0.041 0.959
38 H 0.059 0.941
39 H 0.014 0.986
40 H 0.017 0.983
41 H 0.260 0.740
42 H 0.133 0.867
43 H 0.126 0.874
44 H 0.128 0.872
45 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.350 16.285 2.338 17.300
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.262 6.262
3 C 0.317 3.683
4 O -0.373 6.373
5 C 0.001 3.999
6 H 0.134 0.866
7 C -0.098 4.098
8 N -0.191 5.191
9 C -0.068 4.068
10 C -0.099 4.099
11 H 0.077 0.923
12 C -0.182 4.182
13 C -0.009 4.009
14 C -0.552 4.552
15 H 0.074 0.926
16 C -0.144 4.144
17 N -0.536 5.536
18 Si 0.718 3.282
19 H -0.203 1.203
20 H -0.214 1.214
21 H -0.203 1.203
22 C -0.060 4.060
23 C -0.103 4.103
24 C -0.154 4.154
25 C -0.123 4.123
26 C -0.147 4.147
27 C 0.035 3.965
28 O -0.203 6.203
29 H 0.083 0.917
30 H 0.126 0.874
31 H 0.084 0.916
32 H 0.114 0.886
33 H 0.137 0.863
34 H 0.060 0.940
35 H 0.098 0.902
36 H 0.058 0.942
37 H 0.060 0.940
38 H 0.078 0.922
39 H 0.032 0.968
40 H 0.035 0.965
41 H 0.070 0.930
42 H 0.151 0.849
43 H 0.144 0.856
44 H 0.146 0.854
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -5.514 16.443 2.616 17.539
hybrid contribution -0.613 -0.953 -0.376 1.194
sum -6.127 15.490 2.240 16.808
Atomic orbital electron populations
1.23366 0.75275 1.04313 1.02653 1.86520 1.24016 1.31800 1.83879
1.22710 0.90307 0.82048 0.73277 1.90692 1.66537 1.36254 1.43775
1.22327 0.89530 0.84455 1.03624 0.86563 1.22977 0.87712 1.04952
0.94192 1.59329 1.06992 1.01878 1.50871 1.22746 1.00180 0.90630
0.93208 1.21263 0.99594 0.92179 0.96848 0.92264 1.21617 0.98262
1.01011 0.97356 1.19111 0.96666 0.91360 0.93792 1.21151 1.42530
0.90841 1.00679 0.92552 1.25002 0.95358 0.99150 0.94873 1.69955
1.44282 1.27644 1.11681 0.86695 0.78589 0.83568 0.79380 1.20296
1.21383 1.20256 1.18901 0.95266 0.92282 0.99539 1.20896 0.93456
0.96934 0.98982 1.20981 1.00134 0.93927 1.00351 1.20882 0.92766
0.99646 0.99009 1.20397 0.95752 0.95320 1.03265 1.19039 0.83836
0.96585 0.97050 1.86264 1.24469 1.25177 1.84438 0.91705 0.87367
0.91639 0.88614 0.86269 0.94041 0.90170 0.94166 0.94037 0.92196
0.96814 0.96481 0.93004 0.84877 0.85592 0.85428 0.85276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.34 10.56 101.05 1.07 1.41 16
2 O -0.35 -4.37 10.57 -39.24 -0.41 -4.79 16
3 C 0.48 6.70 7.31 36.01 0.26 6.96 16
4 O -0.49 -7.92 16.27 -25.41 -0.41 -8.34 16
5 C 0.06 0.84 3.34 -27.66 -0.09 0.75 16
6 H 0.12 1.58 6.55 -51.93 -0.34 1.24 16
7 C 0.03 0.41 5.20 -3.69 -0.02 0.39 16
8 N -0.48 -6.93 4.06 -170.82 -0.69 -7.62 16
9 C 0.06 0.91 4.19 -3.82 -0.02 0.90 16
10 C -0.08 -1.51 2.39 -90.61 -0.22 -1.73 16
11 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16
12 C -0.13 -2.26 8.90 37.16 0.33 -1.93 16
13 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16
14 C -0.51 -13.79 8.34 -34.44 -0.29 -14.07 16
15 H 0.06 1.47 7.08 -52.48 -0.37 1.10 16
16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
17 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16
18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16
19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
22 C 0.04 0.52 5.09 -83.59 -0.43 0.10 16
23 C -0.08 -1.05 9.27 -39.31 -0.36 -1.41 16
24 C -0.14 -1.44 10.03 -39.64 -0.40 -1.84 16
25 C -0.10 -1.08 10.04 -39.60 -0.40 -1.48 16
26 C -0.13 -1.56 9.94 -39.41 -0.39 -1.96 16
27 C 0.08 1.17 6.47 -39.11 -0.25 0.92 16
28 O -0.29 -4.40 9.61 -39.93 -0.38 -4.79 16
29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
30 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16
31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
33 H 0.12 1.59 6.52 -51.93 -0.34 1.25 16
34 H 0.04 0.68 6.36 -51.93 -0.33 0.34 16
35 H 0.08 1.31 7.45 -51.93 -0.39 0.92 16
36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16
38 H 0.06 1.18 6.82 -51.93 -0.35 0.82 16
39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
42 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16
43 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16
44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16
45 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
LS Contribution 368.47 15.07 5.55 5.55
Total: -1.00 -31.54 368.47 -8.72 -40.26
By element:
Atomic # 1 Polarization: 6.70 SS G_CDS: -6.66 Total: 0.04 kcal
Atomic # 6 Polarization: -9.53 SS G_CDS: -1.42 Total: -10.95 kcal
Atomic # 7 Polarization: -33.15 SS G_CDS: 0.04 Total: -33.11 kcal
Atomic # 8 Polarization: -16.70 SS G_CDS: -1.21 Total: -17.91 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -31.54 -8.72 -40.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895918241.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.742 kcal
(2) G-P(sol) polarization free energy of solvation -31.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.286 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds