Wall clock time and date at job start Tue Mar 31 2020 12:31:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34223 * 116.99892 * 2 1
4 4 O 1.20827 * 120.00166 * 0.02562 * 3 2 1
5 5 C 1.50704 * 120.00048 * 180.02562 * 3 2 1
6 6 H 1.08992 * 109.76801 * 54.25152 * 5 3 2
7 7 C 1.53424 * 109.77518 * 293.44702 * 5 3 2
8 8 N 1.46751 * 108.59407 * 177.14054 * 7 5 3
9 9 C 1.46902 * 111.00306 * 285.48853 * 8 7 5
10 10 C 1.53004 * 109.46895 * 284.21992 * 9 8 7
11 11 H 1.08995 * 109.47177 * 55.20716 * 10 9 8
12 12 C 1.53005 * 109.47004 * 295.20748 * 10 9 8
13 13 C 1.53001 * 109.47214 * 175.21370 * 10 9 8
14 14 C 1.50691 * 109.47484 * 184.99908 * 13 10 9
15 15 H 1.08009 * 120.00105 * 359.97438 * 14 13 10
16 16 C 1.37878 * 120.00584 * 179.97438 * 14 13 10
17 17 N 1.31517 * 119.99326 * 359.97438 * 16 14 13
18 18 Si 1.86802 * 120.00393 * 180.02562 * 16 14 13
19 19 H 1.48493 * 109.47077 * 59.99543 * 18 16 14
20 20 H 1.48496 * 109.46892 * 179.97438 * 18 16 14
21 21 H 1.48497 * 109.46602 * 299.99853 * 18 16 14
22 22 C 1.39849 * 112.12307 * 50.27062 * 8 7 5
23 23 C 1.39146 * 118.60212 * 160.09788 * 22 8 7
24 24 C 1.38064 * 120.23996 * 179.70361 * 23 22 8
25 25 C 1.38259 * 120.11940 * 0.02974 * 24 23 22
26 26 C 1.38168 * 120.02797 * 0.07436 * 25 24 23
27 27 C 1.38775 * 120.20530 * 359.94202 * 26 25 24
28 28 O 1.36150 * 118.74434 * 179.74760 * 27 26 25
29 29 H 1.08998 * 109.47135 * 59.99773 * 1 2 3
30 30 H 1.09007 * 109.46774 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.46825 * 299.99597 * 1 2 3
32 32 H 1.09001 * 109.61695 * 296.87996 * 7 5 3
33 33 H 1.08999 * 109.61561 * 57.22893 * 7 5 3
34 34 H 1.09000 * 109.47045 * 44.21251 * 9 8 7
35 35 H 1.09001 * 109.47319 * 164.21846 * 9 8 7
36 36 H 1.09003 * 109.47030 * 304.80741 * 12 10 9
37 37 H 1.08999 * 109.46860 * 64.80416 * 12 10 9
38 38 H 1.08998 * 109.46981 * 184.80416 * 12 10 9
39 39 H 1.09004 * 109.46370 * 304.99831 * 13 10 9
40 40 H 1.08997 * 109.47196 * 64.99433 * 13 10 9
41 41 H 0.97008 * 119.99428 * 180.02562 * 17 16 14
42 42 H 1.08004 * 119.87497 * 359.72327 * 23 22 8
43 43 H 1.08001 * 119.93474 * 180.02562 * 24 23 22
44 44 H 1.07998 * 119.98092 * 180.35604 * 25 24 23
45 45 H 1.07998 * 119.90225 * 179.91558 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 1 3.9655 0.6959 -0.8333
7 6 4.1153 0.7281 1.3236
8 7 5.5816 0.7531 1.2682
9 6 6.0942 -0.3195 0.4052
10 6 5.9966 -1.6571 1.1416
11 1 4.9690 -1.8187 1.4669
12 6 6.9203 -1.6364 2.3612
13 6 6.4181 -2.7886 0.2019
14 6 6.2057 -4.1147 0.8853
15 1 5.8100 -4.1473 1.8898
16 6 6.5164 -5.2865 0.2286
17 7 6.9978 -5.2468 -0.9947
18 14 6.2524 -6.9304 1.0756
19 1 4.8168 -7.0834 1.4226
20 1 6.6605 -8.0285 0.1630
21 1 7.0697 -6.9858 2.3142
22 6 6.0722 1.9989 0.8645
23 6 7.3939 2.3209 1.1571
24 6 7.9150 3.5391 0.7689
25 6 7.1250 4.4462 0.0874
26 6 5.8109 4.1356 -0.2054
27 6 5.2795 2.9134 0.1815
28 8 3.9797 2.6403 -0.1178
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 3.7695 1.3513 2.1483
33 1 3.7693 -0.2953 1.4685
34 1 5.5025 -0.3642 -0.5091
35 1 7.1356 -0.1178 0.1546
36 1 7.9340 -1.3903 2.0450
37 1 6.5689 -0.8871 3.0704
38 1 6.9161 -2.6171 2.8369
39 1 5.8182 -2.7482 -0.7073
40 1 7.4719 -2.6758 -0.0529
41 1 7.2160 -6.0712 -1.4570
42 1 8.0144 1.6152 1.6894
43 1 8.9416 3.7838 0.9982
44 1 7.5366 5.3961 -0.2202
45 1 5.1952 4.8462 -0.7367
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000895918241.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:17
Heat of formation + Delta-G solvation = -106.017850 kcal
Electronic energy + Delta-G solvation = -27495.584143 eV
Core-core repulsion = 23670.922571 eV
Total energy + Delta-G solvation = -3824.661572 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.67676 -41.38577 -38.63806 -38.57250 -37.59731 -36.09916 -34.04024 -32.59345
-31.38452 -29.78950 -28.93670 -28.23699 -27.02702 -25.88904 -24.68502 -23.34764
-22.87051 -21.44035 -20.47704 -19.35277 -19.03337 -18.54783 -18.24583 -17.93742
-17.37505 -16.80758 -16.51855 -16.16231 -15.95190 -15.80226 -15.43229 -14.92442
-14.79955 -14.74116 -14.42658 -14.24837 -14.16840 -13.76549 -13.31330 -13.29703
-13.05240 -12.83294 -12.73324 -12.62359 -12.59109 -12.39876 -12.23379 -12.16616
-12.04331 -11.95845 -11.69402 -11.41547 -11.08614 -11.06611 -10.48668 -10.36092
-9.42892 -8.98848 -8.13676 -6.21905 0.30318 0.39684 0.76615 0.96108
1.43760 1.45439 1.52986 2.24412 2.44069 2.53431 2.80238 3.16553
3.20612 3.45166 3.51485 3.69978 3.90261 4.05767 4.17265 4.20848
4.27251 4.29019 4.33927 4.44555 4.48454 4.53580 4.55847 4.65350
4.77216 4.82466 4.95750 5.00991 5.06352 5.20477 5.27363 5.29855
5.46685 5.54865 5.55669 5.58712 5.67623 5.79563 5.83158 5.91259
5.95160 6.31555 6.34693 6.41847 6.93621 7.46235 8.98008
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.010718 B = 0.004178 C = 0.003191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2611.874416 B = 6700.423942 C = 8772.147586
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.352 6.352
3 C 0.483 3.517
4 O -0.513 6.513
5 C 0.061 3.939
6 H 0.115 0.885
7 C 0.034 3.966
8 N -0.473 5.473
9 C 0.070 3.930
10 C -0.069 4.069
11 H 0.061 0.939
12 C -0.116 4.116
13 C 0.034 3.966
14 C -0.525 4.525
15 H 0.062 0.938
16 C 0.001 3.999
17 N -0.935 5.935
18 Si 0.956 3.044
19 H -0.268 1.268
20 H -0.288 1.288
21 H -0.268 1.268
22 C 0.016 3.984
23 C -0.093 4.093
24 C -0.129 4.129
25 C -0.093 4.093
26 C -0.138 4.138
27 C 0.060 3.940
28 O -0.305 6.305
29 H 0.068 0.932
30 H 0.135 0.865
31 H 0.071 0.929
32 H 0.101 0.899
33 H 0.120 0.880
34 H 0.035 0.965
35 H 0.078 0.922
36 H 0.040 0.960
37 H 0.063 0.937
38 H 0.041 0.959
39 H -0.012 1.012
40 H -0.008 1.008
41 H 0.261 0.739
42 H 0.135 0.865
43 H 0.156 0.844
44 H 0.163 0.837
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.119 17.172 3.459 18.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.268 6.268
3 C 0.324 3.676
4 O -0.401 6.401
5 C 0.002 3.998
6 H 0.132 0.868
7 C -0.094 4.094
8 N -0.188 5.188
9 C -0.055 4.055
10 C -0.088 4.088
11 H 0.079 0.921
12 C -0.173 4.173
13 C -0.003 4.003
14 C -0.563 4.563
15 H 0.080 0.920
16 C -0.196 4.196
17 N -0.575 5.575
18 Si 0.781 3.219
19 H -0.193 1.193
20 H -0.213 1.213
21 H -0.193 1.193
22 C -0.081 4.081
23 C -0.113 4.113
24 C -0.148 4.148
25 C -0.111 4.111
26 C -0.157 4.157
27 C 0.013 3.987
28 O -0.220 6.220
29 H 0.086 0.914
30 H 0.153 0.847
31 H 0.090 0.910
32 H 0.119 0.881
33 H 0.138 0.862
34 H 0.054 0.946
35 H 0.096 0.904
36 H 0.060 0.940
37 H 0.082 0.918
38 H 0.060 0.940
39 H 0.007 0.993
40 H 0.010 0.990
41 H 0.069 0.931
42 H 0.153 0.847
43 H 0.174 0.826
44 H 0.180 0.820
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -5.288 17.336 3.754 18.509
hybrid contribution -0.670 -1.146 -0.760 1.530
sum -5.958 16.190 2.994 17.510
Atomic orbital electron populations
1.23711 0.73297 1.06266 1.03168 1.86515 1.26015 1.30966 1.83352
1.22712 0.90275 0.82064 0.72503 1.90671 1.67058 1.37106 1.45249
1.22317 0.89585 0.84271 1.03671 0.86807 1.22957 0.87271 1.04997
0.94200 1.59265 1.07380 1.01843 1.50342 1.22433 1.00145 0.90048
0.92862 1.21030 0.99672 0.91830 0.96258 0.92115 1.21512 0.98169
1.00591 0.97027 1.18983 0.94638 0.92880 0.93839 1.21576 1.41796
0.92005 1.00967 0.91972 1.25874 0.95189 1.03075 0.95480 1.70092
1.45638 1.28548 1.13271 0.85636 0.78957 0.78897 0.78394 1.19268
1.21328 1.19322 1.19017 0.96126 0.91978 1.00940 1.21094 0.92890
0.98016 0.99252 1.21362 1.01478 0.92888 0.99058 1.21308 0.91733
1.00722 0.97354 1.20716 0.96834 0.94825 1.03292 1.19360 0.83596
0.97619 0.98114 1.86240 1.25307 1.25572 1.84853 0.91365 0.84715
0.91037 0.88092 0.86202 0.94640 0.90380 0.94049 0.91846 0.94010
0.99332 0.98972 0.93056 0.84677 0.82631 0.81982 0.84317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.49 10.56 113.37 1.20 1.68 16
2 O -0.35 -8.82 10.57 -51.35 -0.54 -9.36 16
3 C 0.48 13.68 7.31 71.24 0.52 14.20 16
4 O -0.51 -16.82 16.27 28.33 0.46 -16.36 16
5 C 0.06 1.72 3.34 29.99 0.10 1.82 16
6 H 0.11 3.21 6.55 -2.39 -0.02 3.19 16
7 C 0.03 0.92 5.20 86.47 0.45 1.37 16
8 N -0.47 -13.58 4.06 -694.34 -2.82 -16.40 16
9 C 0.07 2.28 4.19 86.30 0.36 2.65 16
10 C -0.07 -2.63 2.39 -10.79 -0.03 -2.65 16
11 H 0.06 2.29 6.66 -2.39 -0.02 2.28 16
12 C -0.12 -4.10 8.90 71.98 0.64 -3.46 16
13 C 0.03 1.71 4.45 29.85 0.13 1.84 16
14 C -0.53 -28.48 8.34 25.60 0.21 -28.27 16
15 H 0.06 3.23 7.08 -2.91 -0.02 3.21 16
16 C 0.00 0.07 5.46 84.65 0.46 0.53 16
17 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16
18 Si 0.96 43.33 29.54 68.60 2.03 45.35 16
19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16
21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16
22 C 0.02 0.43 5.09 38.26 0.19 0.63 16
23 C -0.09 -2.20 9.27 22.45 0.21 -1.99 16
24 C -0.13 -2.38 10.03 22.23 0.22 -2.15 16
25 C -0.09 -1.64 10.04 22.26 0.22 -1.41 16
26 C -0.14 -3.14 9.94 22.38 0.22 -2.91 16
27 C 0.06 1.67 6.47 22.57 0.15 1.81 16
28 O -0.31 -9.34 9.61 -76.41 -0.73 -10.08 16
29 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16
30 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16
31 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16
32 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16
33 H 0.12 3.17 6.52 -2.39 -0.02 3.15 16
34 H 0.04 1.19 6.36 -2.39 -0.02 1.18 16
35 H 0.08 2.57 7.45 -2.39 -0.02 2.55 16
36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
37 H 0.06 1.96 7.88 -2.39 -0.02 1.95 16
38 H 0.04 1.61 6.82 -2.39 -0.02 1.60 16
39 H -0.01 -0.64 8.14 -2.38 -0.02 -0.65 16
40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16
41 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16
42 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16
43 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16
44 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16
45 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16
Total: -1.00 -68.47 368.47 4.93 -63.54
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: 0.98 Total: 15.12 kcal
Atomic # 6 Polarization: -21.59 SS G_CDS: 5.27 Total: -16.32 kcal
Atomic # 7 Polarization: -69.36 SS G_CDS: -2.54 Total: -71.90 kcal
Atomic # 8 Polarization: -34.98 SS G_CDS: -0.82 Total: -35.79 kcal
Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal
Total: -68.47 4.93 -63.54 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895918241.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.480 kcal
(2) G-P(sol) polarization free energy of solvation -68.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds