Wall clock time and date at job start Tue Mar 31 2020 12:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99832 * 2 1 4 4 O 1.20821 * 120.00338 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99596 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46880 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.46920 * 180.02562 * 6 5 3 8 8 C 1.37981 * 120.07308 * 266.35021 * 7 6 5 9 9 C 1.38338 * 120.14540 * 179.97438 * 8 7 6 10 10 C 1.38384 * 120.29358 * 0.05177 * 9 8 7 11 11 C 1.37934 * 120.14356 * 359.94790 * 10 9 8 12 12 C 1.39561 * 120.07953 * 86.33265 * 7 6 5 13 13 C 1.47844 * 120.13702 * 359.74527 * 12 7 6 14 14 O 1.21556 * 120.00453 * 310.31803 * 13 12 7 15 15 N 1.34785 * 119.99990 * 130.32200 * 13 12 7 16 16 C 1.46500 * 119.99588 * 4.27324 * 15 13 12 17 17 C 1.46497 * 119.99969 * 184.27429 * 15 13 12 18 18 H 1.08998 * 109.47370 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.46882 * 239.99946 * 17 15 13 20 20 C 1.50700 * 109.47050 * 120.00290 * 17 15 13 21 21 H 1.07999 * 119.99945 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99869 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99857 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99898 * 179.97438 * 22 20 17 25 25 H 1.48497 * 109.47453 * 59.99237 * 24 22 20 26 26 H 1.48500 * 109.47343 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46702 * 299.99326 * 24 22 20 28 28 H 1.09003 * 109.47256 * 299.99266 * 1 2 3 29 29 H 1.08994 * 109.47321 * 59.99824 * 1 2 3 30 30 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47001 * 60.00527 * 5 3 2 32 32 H 1.09001 * 109.47404 * 300.00092 * 5 3 2 33 33 H 1.08991 * 109.47255 * 59.99626 * 6 5 3 34 34 H 1.09001 * 109.46726 * 299.99955 * 6 5 3 35 35 H 1.07994 * 119.92942 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.85497 * 180.02562 * 9 8 7 37 37 H 1.07997 * 119.92719 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.07371 * 180.02562 * 11 10 9 39 39 H 1.08996 * 109.47005 * 86.10886 * 16 15 13 40 40 H 1.09004 * 109.46731 * 206.10668 * 16 15 13 41 41 H 1.09004 * 109.47314 * 326.10640 * 16 15 13 42 42 H 1.09004 * 109.47249 * 180.02562 * 19 17 15 43 43 H 1.09001 * 109.47304 * 299.99928 * 19 17 15 44 44 H 1.09004 * 109.47639 * 60.00154 * 19 17 15 45 45 H 0.96996 * 119.99694 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 6 5.5050 2.8209 -0.0010 8 6 6.1925 2.9320 1.1901 9 6 7.5740 3.0039 1.1908 10 6 8.2756 2.9661 -0.0015 11 6 7.6005 2.8552 -1.1992 12 6 6.2066 2.7813 -1.2069 13 6 5.4767 2.6562 -2.4865 14 8 4.6305 1.7941 -2.6219 15 7 5.7496 3.4981 -3.5030 16 6 6.8330 4.4757 -3.3736 17 6 4.9628 3.4356 -4.7372 18 1 4.2091 2.6533 -4.6484 19 6 5.8867 3.1216 -5.9156 20 6 4.2860 4.7620 -4.9692 21 1 4.4275 5.5705 -4.2672 22 6 3.4854 4.9430 -6.0770 23 7 3.3128 3.9582 -6.9315 24 14 2.6459 6.5868 -6.3642 25 1 3.6728 7.6526 -6.4856 26 1 1.8485 6.5235 -7.6153 27 1 1.7495 6.8912 -5.2202 28 1 -0.3634 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9556 0.7809 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2356 0.8905 34 1 3.6100 3.2367 -0.8893 35 1 5.6510 2.9629 2.1240 36 1 8.1075 3.0905 2.1259 37 1 9.3540 3.0231 0.0059 38 1 8.1492 2.8253 -2.1290 39 1 7.7763 4.0133 -3.6642 40 1 6.6318 5.3289 -4.0216 41 1 6.8969 4.8125 -2.3389 42 1 5.3014 3.0755 -6.8340 43 1 6.6408 3.9036 -6.0046 44 1 6.3763 2.1622 -5.7479 45 1 2.7499 4.0857 -7.7111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900567344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:39 Heat of formation + Delta-G solvation = -116.974348 kcal Electronic energy + Delta-G solvation = -27509.245575 eV Core-core repulsion = 23684.108894 eV Total energy + Delta-G solvation = -3825.136681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72112 -41.24111 -39.33495 -37.70287 -37.18502 -35.20794 -34.72718 -32.52332 -31.22730 -30.71516 -28.68048 -27.67964 -27.32957 -25.94393 -24.71353 -23.07096 -22.26299 -21.48281 -20.13547 -18.81259 -18.57289 -18.02761 -17.72942 -17.61091 -17.40990 -16.74500 -16.64107 -16.23911 -15.57907 -15.26592 -14.94952 -14.75694 -14.60508 -14.28634 -14.11659 -13.89805 -13.80494 -13.62030 -13.57335 -13.22438 -13.01881 -12.88263 -12.80671 -12.71266 -12.67039 -12.62086 -12.22370 -12.14368 -12.03474 -11.89159 -11.80700 -11.60936 -11.24033 -10.67251 -10.49591 -9.78043 -9.68311 -9.33488 -8.17897 -6.34145 0.11715 0.44122 1.12033 1.37209 1.40296 1.47155 1.76446 1.85490 2.30508 2.47007 2.87618 3.10004 3.59685 3.68129 3.85232 3.92784 4.10654 4.19518 4.24492 4.26510 4.29472 4.41729 4.47742 4.57810 4.60374 4.64832 4.68579 4.73299 4.85272 4.89469 4.94699 4.98639 5.04346 5.05299 5.16725 5.32561 5.43666 5.48267 5.54000 5.58290 5.63953 5.66685 6.01640 6.05576 6.13734 6.66204 6.72875 6.79158 7.27827 7.44188 8.86247 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.005157 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.786714 B = 5428.640060 C = 7605.316159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.464 3.536 4 O -0.544 6.544 5 C -0.103 4.103 6 C -0.062 4.062 7 C -0.055 4.055 8 C -0.116 4.116 9 C -0.091 4.091 10 C -0.118 4.118 11 C -0.093 4.093 12 C -0.136 4.136 13 C 0.537 3.463 14 O -0.588 6.588 15 N -0.594 5.594 16 C 0.083 3.917 17 C 0.264 3.736 18 H 0.008 0.992 19 C -0.130 4.130 20 C -0.540 4.540 21 H 0.057 0.943 22 C 0.017 3.983 23 N -0.915 5.915 24 Si 0.961 3.039 25 H -0.260 1.260 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.035 0.965 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.020 0.980 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.161 -3.750 18.522 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.435 6.435 5 C -0.140 4.140 6 C -0.099 4.099 7 C -0.056 4.056 8 C -0.134 4.134 9 C -0.109 4.109 10 C -0.136 4.136 11 C -0.112 4.112 12 C -0.139 4.139 13 C 0.326 3.674 14 O -0.471 6.471 15 N -0.323 5.323 16 C -0.059 4.059 17 C 0.162 3.838 18 H 0.026 0.974 19 C -0.188 4.188 20 C -0.578 4.578 21 H 0.075 0.925 22 C -0.183 4.183 23 N -0.554 5.554 24 Si 0.786 3.214 25 H -0.184 1.184 26 H -0.206 1.206 27 H -0.208 1.208 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.171 0.829 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.409 -3.930 18.223 20.451 hybrid contribution -1.345 0.778 -1.085 1.896 sum 7.064 -3.152 17.138 18.803 Atomic orbital electron populations 1.23545 0.75019 1.05789 1.02253 1.86495 1.24981 1.32901 1.83821 1.24252 0.93016 0.81066 0.70731 1.90635 1.68184 1.37460 1.47181 1.21487 0.85945 0.99172 1.07409 1.20242 0.91962 0.95082 1.02621 1.19756 0.94311 0.98799 0.92714 1.21271 0.95267 1.00182 0.96669 1.21715 0.93467 0.96152 0.99567 1.21467 1.01628 0.99334 0.91153 1.21501 0.91470 0.97750 1.00449 1.19829 0.95288 1.06898 0.91851 1.19081 0.82417 0.81221 0.84640 1.90628 1.36347 1.36854 1.83224 1.48167 1.34196 1.34239 1.15689 1.21916 0.88922 0.92467 1.02642 1.18522 0.89181 0.95933 0.80114 0.97390 1.21852 0.98582 0.97404 1.01000 1.21524 1.29673 0.98332 1.08295 0.92489 1.25698 0.96665 1.00370 0.95526 1.70009 1.38920 1.33144 1.13329 0.85568 0.78716 0.79942 0.77174 1.18395 1.20587 1.20781 0.91183 0.93361 0.84591 0.87441 0.84364 0.88906 0.94608 0.82904 0.81868 0.82217 0.84879 0.90999 0.91336 0.90400 0.91393 0.93409 0.96050 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.37 -11.09 10.57 -51.36 -0.54 -11.63 16 3 C 0.46 16.06 7.96 71.24 0.57 16.62 16 4 O -0.54 -22.12 15.73 21.98 0.35 -21.77 16 5 C -0.10 -3.17 5.55 29.85 0.17 -3.01 16 6 C -0.06 -2.00 3.93 29.85 0.12 -1.88 16 7 C -0.05 -1.55 5.16 -19.61 -0.10 -1.65 16 8 C -0.12 -2.20 9.67 22.23 0.22 -1.99 16 9 C -0.09 -1.33 10.04 22.33 0.22 -1.10 16 10 C -0.12 -1.93 10.03 22.23 0.22 -1.70 16 11 C -0.09 -2.24 7.80 22.52 0.18 -2.06 16 12 C -0.14 -4.36 4.85 -20.09 -0.10 -4.46 16 13 C 0.54 23.35 6.30 86.78 0.55 23.90 16 14 O -0.59 -30.01 12.92 -3.89 -0.05 -30.06 16 15 N -0.59 -26.32 2.75 -830.20 -2.29 -28.61 16 16 C 0.08 2.79 8.04 127.77 1.03 3.81 16 17 C 0.26 14.24 2.63 44.25 0.12 14.36 16 18 H 0.01 0.52 6.91 -2.39 -0.02 0.51 16 19 C -0.13 -6.41 8.97 71.98 0.65 -5.77 16 20 C -0.54 -30.44 7.96 25.60 0.20 -30.24 16 21 H 0.06 3.15 7.40 -2.91 -0.02 3.13 16 22 C 0.02 0.97 5.30 84.66 0.45 1.42 16 23 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 24 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 28 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.14 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.11 3.95 5.88 -2.39 -0.01 3.94 16 32 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.09 2.60 8.02 -2.39 -0.02 2.58 16 34 H 0.04 1.53 6.94 -2.39 -0.02 1.51 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.13 3.00 6.43 -2.91 -0.02 2.98 16 39 H 0.07 1.98 7.17 -2.39 -0.02 1.96 16 40 H 0.07 2.47 7.08 -2.39 -0.02 2.46 16 41 H 0.08 2.27 6.24 -2.39 -0.01 2.25 16 42 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 43 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -78.13 367.88 6.41 -71.72 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.99 Total: 19.48 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.67 Total: 8.07 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.04 Total: -82.41 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: -0.25 Total: -63.47 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -78.13 6.41 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.250 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds