Wall clock time and date at job start Tue Mar 31 2020 12:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46825 * 2 1 4 4 C 1.52996 * 109.47046 * 239.99869 * 2 1 3 5 5 N 1.46907 * 109.46820 * 179.97438 * 4 2 1 6 6 C 1.47010 * 111.00215 * 293.63590 * 5 4 2 7 7 C 1.53096 * 109.25705 * 177.60913 * 6 5 4 8 8 O 1.43012 * 109.26091 * 56.84959 * 7 6 5 9 9 C 1.43019 * 113.73759 * 301.33325 * 8 7 6 10 10 C 1.47015 * 110.99490 * 169.99984 * 5 4 2 11 11 O 1.42902 * 109.46912 * 120.00070 * 2 1 3 12 12 C 1.35636 * 116.99867 * 275.18578 * 11 2 1 13 13 C 1.38674 * 120.16171 * 5.41321 * 12 11 2 14 14 C 1.38093 * 120.08941 * 179.74392 * 13 12 11 15 15 C 1.38686 * 120.41774 * 0.56340 * 14 13 12 16 16 C 1.37700 * 120.32214 * 359.69120 * 15 14 13 17 17 C 1.39849 * 119.89915 * 0.02640 * 16 15 14 18 18 C 1.47534 * 120.20251 * 180.02562 * 17 16 15 19 19 O 1.21815 * 119.99598 * 179.97438 * 18 17 16 20 20 C 1.41831 * 120.00009 * 359.97438 * 18 17 16 21 21 H 1.07993 * 120.00433 * 0.02562 * 20 18 17 22 22 C 1.40325 * 119.99491 * 180.02562 * 20 18 17 23 23 N 1.30536 * 120.00701 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 119.99639 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47219 * 59.99921 * 24 22 20 26 26 H 1.48500 * 109.47411 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47192 * 299.99933 * 24 22 20 28 28 H 1.08993 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47011 * 300.00226 * 1 2 3 30 30 H 1.09004 * 109.46881 * 59.99894 * 1 2 3 31 31 H 1.09002 * 109.47179 * 300.00261 * 4 2 1 32 32 H 1.09004 * 109.47087 * 60.00364 * 4 2 1 33 33 H 1.09002 * 109.50765 * 297.54489 * 6 5 4 34 34 H 1.09000 * 109.50775 * 57.66919 * 6 5 4 35 35 H 1.08999 * 109.50671 * 296.91264 * 7 6 5 36 36 H 1.09004 * 109.53795 * 176.80662 * 7 6 5 37 37 H 1.09004 * 109.50451 * 298.73097 * 9 8 7 38 38 H 1.09001 * 109.54024 * 178.62531 * 9 8 7 39 39 H 1.09002 * 109.51086 * 302.32528 * 10 5 4 40 40 H 1.09001 * 109.50871 * 62.46287 * 10 5 4 41 41 H 1.07998 * 119.95442 * 0.02801 * 13 12 11 42 42 H 1.07994 * 119.78820 * 180.25193 * 14 13 12 43 43 H 1.07998 * 119.83717 * 179.72068 * 15 14 13 44 44 H 1.08002 * 120.05310 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00432 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5090 -0.7207 -1.2495 6 6 4.0354 0.6435 -1.4019 7 6 5.5645 0.6049 -1.3371 8 8 6.0571 -0.2814 -2.3457 9 6 5.5650 -1.6190 -2.2271 10 6 4.0359 -1.6029 -2.3008 11 8 2.0063 -0.6737 1.1668 12 6 2.1085 0.0602 2.3029 13 6 1.6542 1.3701 2.3295 14 6 1.7542 2.1142 3.4885 15 6 2.3187 1.5641 4.6296 16 6 2.7801 0.2667 4.6208 17 6 2.6802 -0.5008 3.4560 18 6 3.1719 -1.8917 3.4393 19 8 3.0826 -2.5570 2.4228 20 6 3.7487 -2.4541 4.6066 21 1 3.8275 -1.8644 5.5079 22 6 4.2168 -3.7768 4.5904 23 7 4.1211 -4.4899 3.5012 24 14 4.9758 -4.5178 6.1281 25 1 3.9786 -4.5036 7.2285 26 1 5.3873 -5.9176 5.8518 27 1 6.1641 -3.7215 6.5266 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.7219 1.0492 -2.3638 34 1 3.6527 1.2731 -0.5986 35 1 5.8783 0.2497 -0.3556 36 1 5.9619 1.6057 -1.5063 37 1 5.8789 -2.0389 -1.2714 38 1 5.9623 -2.2270 -3.0398 39 1 3.6538 -2.6131 -2.1537 40 1 3.7225 -1.2332 -3.2771 41 1 1.2174 1.8074 1.4439 42 1 1.3951 3.1326 3.5049 43 1 2.3963 2.1560 5.5296 44 1 3.2186 -0.1574 5.5120 45 1 4.4444 -5.4044 3.4902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:46 Heat of formation + Delta-G solvation = -83.001670 kcal Electronic energy + Delta-G solvation = -28002.901529 eV Core-core repulsion = 24179.238014 eV Total energy + Delta-G solvation = -3823.663516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89925 -39.14726 -37.25545 -35.90107 -35.44532 -32.56732 -31.98017 -31.05482 -30.44462 -28.95173 -27.90016 -26.57526 -24.49586 -23.94547 -22.87276 -22.25666 -20.50278 -19.99952 -19.62513 -17.54628 -16.61026 -16.41566 -15.99309 -15.51963 -15.23321 -14.97776 -14.84251 -14.65347 -14.53113 -14.37138 -13.80904 -13.74879 -13.23633 -13.05263 -12.71486 -12.47174 -12.39853 -12.10382 -11.92621 -11.81490 -11.50704 -11.37930 -11.31566 -11.24316 -11.12492 -10.82138 -10.72273 -10.49141 -10.33350 -10.30476 -10.05575 -9.99649 -9.53376 -8.85754 -8.15018 -8.12424 -7.32226 -7.23708 -6.13565 -4.73868 1.88090 2.15562 3.13396 3.18347 3.20291 3.75480 3.86877 3.99091 4.09724 4.17019 4.74870 4.83629 4.98496 5.04577 5.15916 5.21325 5.25632 5.29297 5.38375 5.39908 5.45565 5.50843 5.63752 5.66965 5.72248 5.78084 5.81154 5.90205 5.94896 5.96709 5.98235 6.05331 6.11275 6.23146 6.30363 6.41933 6.77631 7.01244 7.01610 7.09301 7.11310 7.24217 7.25326 7.37829 7.57266 8.15646 8.27488 8.93626 9.00191 10.47654 10.72659 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.005197 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.556472 B = 5385.984463 C = 6935.000162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.064 0.936 4 C 0.067 3.933 5 N -0.519 5.519 6 C 0.018 3.982 7 C 0.064 3.936 8 O -0.390 6.390 9 C 0.063 3.937 10 C 0.024 3.976 11 O -0.244 6.244 12 C 0.156 3.844 13 C -0.235 4.235 14 C -0.093 4.093 15 C -0.179 4.179 16 C -0.059 4.059 17 C -0.137 4.137 18 C 0.392 3.608 19 O -0.509 6.509 20 C -0.524 4.524 21 H 0.069 0.931 22 C 0.083 3.917 23 N -0.738 5.738 24 Si 0.901 3.099 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.266 1.266 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 9.937 -8.187 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.021 3.979 3 H 0.082 0.918 4 C -0.061 4.061 5 N -0.243 5.243 6 C -0.110 4.110 7 C -0.013 4.013 8 O -0.309 6.309 9 C -0.014 4.014 10 C -0.104 4.104 11 O -0.154 6.154 12 C 0.109 3.891 13 C -0.254 4.254 14 C -0.112 4.112 15 C -0.198 4.198 16 C -0.078 4.078 17 C -0.139 4.139 18 C 0.285 3.715 19 O -0.395 6.395 20 C -0.556 4.556 21 H 0.087 0.913 22 C -0.140 4.140 23 N -0.368 5.368 24 Si 0.725 3.275 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.191 1.191 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.330 9.123 -8.564 12.728 hybrid contribution -0.343 0.353 0.374 0.618 sum -2.673 9.475 -8.190 12.806 Atomic orbital electron populations 1.22349 0.95462 1.03528 1.02293 1.22370 0.93379 0.96176 0.86021 0.91804 1.22151 0.87314 1.02217 0.94423 1.62017 1.07298 1.08364 1.46634 1.22809 0.96833 0.91044 1.00333 1.22629 0.92113 0.94040 0.92504 1.87913 1.70244 1.20414 1.52330 1.22675 0.92242 0.83743 1.02774 1.22733 0.96620 0.98698 0.92349 1.86596 1.79157 1.35060 1.14630 1.19428 0.93206 0.89296 0.87142 1.21093 1.09703 0.94994 0.99596 1.20780 0.98987 0.98594 0.92808 1.20913 1.04277 0.96400 0.98167 1.21403 0.96045 0.92697 0.97611 1.21568 1.00748 1.00893 0.90660 1.17952 0.80932 0.83075 0.89552 1.90566 1.54125 1.60778 1.34058 1.20855 1.37854 0.97652 0.99244 0.91261 1.25915 0.94375 0.97159 0.96530 1.69960 1.31929 1.08079 1.26796 0.86532 0.80136 0.78327 0.82485 1.19069 1.20422 1.19053 0.91163 0.91593 0.91795 0.89256 0.93665 0.94590 0.89928 0.91697 0.88823 0.91458 0.88703 0.89260 0.94696 0.86547 0.87172 0.86968 0.84946 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.17 37.16 0.34 -2.04 16 2 C 0.08 1.24 2.11 -26.73 -0.06 1.19 16 3 H 0.06 0.94 4.69 -51.93 -0.24 0.69 16 4 C 0.07 0.99 4.65 -3.82 -0.02 0.97 16 5 N -0.52 -8.42 4.59 -234.30 -1.08 -9.50 16 6 C 0.02 0.25 5.44 -3.71 -0.02 0.23 16 7 C 0.06 0.91 7.01 37.21 0.26 1.17 16 8 O -0.39 -5.91 10.83 -35.23 -0.38 -6.29 16 9 C 0.06 0.89 7.01 37.21 0.26 1.15 16 10 C 0.02 0.34 5.64 -3.71 -0.02 0.32 16 11 O -0.24 -5.33 7.75 -40.44 -0.31 -5.64 16 12 C 0.16 3.40 6.62 -38.61 -0.26 3.14 16 13 C -0.24 -4.12 8.23 -39.47 -0.32 -4.45 16 14 C -0.09 -1.51 10.04 -39.47 -0.40 -1.91 16 15 C -0.18 -3.07 10.02 -39.61 -0.40 -3.47 16 16 C -0.06 -1.22 9.43 -39.18 -0.37 -1.59 16 17 C -0.14 -3.32 5.90 -104.69 -0.62 -3.94 16 18 C 0.39 11.34 6.91 -34.42 -0.24 11.10 16 19 O -0.51 -16.30 13.71 -16.75 -0.23 -16.53 16 20 C -0.52 -14.67 8.86 -37.42 -0.33 -15.00 16 21 H 0.07 1.76 6.02 -52.49 -0.32 1.44 16 22 C 0.08 2.26 5.50 -17.32 -0.10 2.16 16 23 N -0.74 -21.55 11.73 55.57 0.65 -20.89 16 24 Si 0.90 19.67 29.56 -169.99 -5.03 14.64 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.90 6.90 -51.93 -0.36 0.54 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.40 8.04 -51.93 -0.42 0.99 16 32 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.17 6.38 -51.93 -0.33 0.84 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.12 1.72 5.42 -52.49 -0.28 1.44 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.13 2.63 6.20 -52.49 -0.33 2.30 16 45 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -34.41 361.43 -9.69 -44.09 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.48 Total: 5.62 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.28 Total: -10.95 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: -0.42 Total: -30.39 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.92 Total: -28.46 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.41 -9.69 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.911 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds