Wall clock time and date at job start Tue Mar 31 2020 12:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46825 * 2 1 4 4 C 1.52996 * 109.47046 * 239.99869 * 2 1 3 5 5 N 1.46907 * 109.46820 * 179.97438 * 4 2 1 6 6 C 1.47010 * 111.00215 * 293.63590 * 5 4 2 7 7 C 1.53096 * 109.25705 * 177.60913 * 6 5 4 8 8 O 1.43012 * 109.26091 * 56.84959 * 7 6 5 9 9 C 1.43019 * 113.73759 * 301.33325 * 8 7 6 10 10 C 1.47015 * 110.99490 * 169.99984 * 5 4 2 11 11 O 1.42902 * 109.46912 * 120.00070 * 2 1 3 12 12 C 1.35636 * 116.99867 * 275.18578 * 11 2 1 13 13 C 1.38674 * 120.16171 * 5.41321 * 12 11 2 14 14 C 1.38093 * 120.08941 * 179.74392 * 13 12 11 15 15 C 1.38686 * 120.41774 * 0.56340 * 14 13 12 16 16 C 1.37700 * 120.32214 * 359.69120 * 15 14 13 17 17 C 1.39849 * 119.89915 * 0.02640 * 16 15 14 18 18 C 1.47534 * 120.20251 * 180.02562 * 17 16 15 19 19 O 1.21815 * 119.99598 * 179.97438 * 18 17 16 20 20 C 1.41831 * 120.00009 * 359.97438 * 18 17 16 21 21 H 1.07993 * 120.00433 * 0.02562 * 20 18 17 22 22 C 1.40325 * 119.99491 * 180.02562 * 20 18 17 23 23 N 1.30536 * 120.00701 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 119.99639 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47219 * 59.99921 * 24 22 20 26 26 H 1.48500 * 109.47411 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47192 * 299.99933 * 24 22 20 28 28 H 1.08993 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47011 * 300.00226 * 1 2 3 30 30 H 1.09004 * 109.46881 * 59.99894 * 1 2 3 31 31 H 1.09002 * 109.47179 * 300.00261 * 4 2 1 32 32 H 1.09004 * 109.47087 * 60.00364 * 4 2 1 33 33 H 1.09002 * 109.50765 * 297.54489 * 6 5 4 34 34 H 1.09000 * 109.50775 * 57.66919 * 6 5 4 35 35 H 1.08999 * 109.50671 * 296.91264 * 7 6 5 36 36 H 1.09004 * 109.53795 * 176.80662 * 7 6 5 37 37 H 1.09004 * 109.50451 * 298.73097 * 9 8 7 38 38 H 1.09001 * 109.54024 * 178.62531 * 9 8 7 39 39 H 1.09002 * 109.51086 * 302.32528 * 10 5 4 40 40 H 1.09001 * 109.50871 * 62.46287 * 10 5 4 41 41 H 1.07998 * 119.95442 * 0.02801 * 13 12 11 42 42 H 1.07994 * 119.78820 * 180.25193 * 14 13 12 43 43 H 1.07998 * 119.83717 * 179.72068 * 15 14 13 44 44 H 1.08002 * 120.05310 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00432 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5090 -0.7207 -1.2495 6 6 4.0354 0.6435 -1.4019 7 6 5.5645 0.6049 -1.3371 8 8 6.0571 -0.2814 -2.3457 9 6 5.5650 -1.6190 -2.2271 10 6 4.0359 -1.6029 -2.3008 11 8 2.0063 -0.6737 1.1668 12 6 2.1085 0.0602 2.3029 13 6 1.6542 1.3701 2.3295 14 6 1.7542 2.1142 3.4885 15 6 2.3187 1.5641 4.6296 16 6 2.7801 0.2667 4.6208 17 6 2.6802 -0.5008 3.4560 18 6 3.1719 -1.8917 3.4393 19 8 3.0826 -2.5570 2.4228 20 6 3.7487 -2.4541 4.6066 21 1 3.8275 -1.8644 5.5079 22 6 4.2168 -3.7768 4.5904 23 7 4.1211 -4.4899 3.5012 24 14 4.9758 -4.5178 6.1281 25 1 3.9786 -4.5036 7.2285 26 1 5.3873 -5.9176 5.8518 27 1 6.1641 -3.7215 6.5266 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.7219 1.0492 -2.3638 34 1 3.6527 1.2731 -0.5986 35 1 5.8783 0.2497 -0.3556 36 1 5.9619 1.6057 -1.5063 37 1 5.8789 -2.0389 -1.2714 38 1 5.9623 -2.2270 -3.0398 39 1 3.6538 -2.6131 -2.1537 40 1 3.7225 -1.2332 -3.2771 41 1 1.2174 1.8074 1.4439 42 1 1.3951 3.1326 3.5049 43 1 2.3963 2.1560 5.5296 44 1 3.2186 -0.1574 5.5120 45 1 4.4444 -5.4044 3.4902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:45 Heat of formation + Delta-G solvation = -106.445055 kcal Electronic energy + Delta-G solvation = -28003.918111 eV Core-core repulsion = 24179.238014 eV Total energy + Delta-G solvation = -3824.680097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27103 -40.42593 -38.80833 -37.80574 -36.70293 -34.65966 -33.25753 -32.19340 -32.04561 -30.43653 -29.05132 -28.60844 -25.66469 -25.10095 -24.48175 -23.73864 -21.73762 -21.44196 -21.23590 -19.01686 -18.37207 -17.73937 -17.37245 -17.13564 -16.67055 -16.17568 -16.08670 -16.07228 -15.85772 -15.78081 -15.20646 -15.08396 -14.92461 -14.57845 -14.20564 -13.89249 -13.83318 -13.51167 -13.21874 -13.09265 -13.02883 -12.96924 -12.70133 -12.60163 -12.58156 -12.40326 -12.16137 -12.08322 -11.83467 -11.72846 -11.58951 -11.36025 -10.91453 -10.72938 -9.66701 -9.37112 -9.26318 -8.85606 -8.20697 -6.94138 0.33303 0.68935 1.36775 1.40766 1.51501 2.23597 2.35536 2.48442 2.69415 2.87911 2.98007 3.66842 3.84110 3.88097 3.90895 3.96971 4.03734 4.10980 4.13789 4.16731 4.18425 4.26119 4.35907 4.40531 4.56028 4.60333 4.60946 4.62818 4.66170 4.72749 4.74295 4.80724 4.89419 4.94898 4.99636 5.18340 5.23971 5.27680 5.49726 5.60196 5.77374 5.95630 5.98750 6.02650 6.09640 6.14671 6.78469 6.81071 7.00877 8.41416 8.63658 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009985 B = 0.005197 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.556472 B = 5385.984463 C = 6935.000162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.080 0.920 4 C 0.070 3.930 5 N -0.558 5.558 6 C 0.024 3.976 7 C 0.062 3.938 8 O -0.395 6.395 9 C 0.063 3.937 10 C 0.027 3.973 11 O -0.286 6.286 12 C 0.142 3.858 13 C -0.229 4.229 14 C -0.072 4.072 15 C -0.174 4.174 16 C -0.065 4.065 17 C -0.197 4.197 18 C 0.370 3.630 19 O -0.561 6.561 20 C -0.556 4.556 21 H 0.087 0.913 22 C 0.025 3.975 23 N -0.791 5.791 24 Si 0.989 3.011 25 H -0.252 1.252 26 H -0.271 1.271 27 H -0.253 1.253 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.125 0.875 37 H 0.032 0.968 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.149 0.851 42 H 0.161 0.839 43 H 0.152 0.848 44 H 0.128 0.872 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 13.286 -7.878 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.098 0.902 4 C -0.058 4.058 5 N -0.284 5.284 6 C -0.104 4.104 7 C -0.015 4.015 8 O -0.313 6.313 9 C -0.014 4.014 10 C -0.101 4.101 11 O -0.198 6.198 12 C 0.095 3.905 13 C -0.247 4.247 14 C -0.090 4.090 15 C -0.192 4.192 16 C -0.084 4.084 17 C -0.199 4.199 18 C 0.266 3.734 19 O -0.452 6.452 20 C -0.587 4.587 21 H 0.105 0.895 22 C -0.192 4.192 23 N -0.421 5.421 24 Si 0.808 3.192 25 H -0.176 1.176 26 H -0.195 1.195 27 H -0.177 1.177 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.143 0.857 37 H 0.050 0.950 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.166 0.834 42 H 0.179 0.821 43 H 0.170 0.830 44 H 0.146 0.854 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.096 12.500 -8.245 15.291 hybrid contribution -0.159 -0.568 0.226 0.632 sum -3.254 11.932 -8.018 14.740 Atomic orbital electron populations 1.22303 0.93476 1.02979 1.04052 1.22750 0.94931 0.96607 0.84385 0.90188 1.22161 0.86760 1.01425 0.95441 1.61953 1.08365 1.09899 1.48167 1.22777 0.96235 0.90015 1.01370 1.22736 0.92791 0.95134 0.90820 1.87900 1.70569 1.20559 1.52321 1.22719 0.92702 0.83862 1.02081 1.22693 0.96214 0.98102 0.93045 1.86548 1.79748 1.37378 1.16117 1.19627 0.93414 0.90883 0.86583 1.21420 1.08642 0.93091 1.01569 1.21397 0.96005 1.00298 0.91285 1.21303 1.02797 0.94851 1.00233 1.21454 0.96449 0.94231 0.96232 1.21244 1.05258 0.99526 0.93868 1.18671 0.80249 0.85338 0.89112 1.90499 1.56269 1.62941 1.35529 1.21369 1.38542 0.98858 0.99971 0.89525 1.27155 0.94236 0.97323 1.00527 1.70131 1.33315 1.08738 1.29927 0.85209 0.79403 0.77447 0.77181 1.17608 1.19525 1.17717 0.92951 0.91781 0.87871 0.91485 0.89924 0.92203 0.90123 0.95018 0.85676 0.94966 0.85827 0.90432 0.92278 0.83387 0.82111 0.83016 0.85413 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 9.17 71.98 0.66 -3.63 16 2 C 0.07 2.19 2.11 30.59 0.06 2.25 16 3 H 0.08 2.18 4.69 -2.39 -0.01 2.17 16 4 C 0.07 2.05 4.65 86.30 0.40 2.46 16 5 N -0.56 -18.52 4.59 -895.20 -4.11 -22.63 16 6 C 0.02 0.65 5.44 86.31 0.47 1.12 16 7 C 0.06 1.76 7.01 72.01 0.50 2.26 16 8 O -0.39 -11.89 10.83 -148.98 -1.61 -13.50 16 9 C 0.06 1.87 7.01 72.01 0.50 2.37 16 10 C 0.03 0.79 5.64 86.31 0.49 1.28 16 11 O -0.29 -13.11 7.75 -68.62 -0.53 -13.64 16 12 C 0.14 6.31 6.62 22.90 0.15 6.46 16 13 C -0.23 -7.45 8.23 22.34 0.18 -7.27 16 14 C -0.07 -2.01 10.04 22.34 0.22 -1.78 16 15 C -0.17 -5.41 10.02 22.25 0.22 -5.19 16 16 C -0.07 -2.71 9.43 22.53 0.21 -2.50 16 17 C -0.20 -10.03 5.90 -19.91 -0.12 -10.14 16 18 C 0.37 22.99 6.91 25.61 0.18 23.17 16 19 O -0.56 -39.16 13.71 16.16 0.22 -38.94 16 20 C -0.56 -32.88 8.86 23.67 0.21 -32.67 16 21 H 0.09 4.59 6.02 -2.91 -0.02 4.57 16 22 C 0.03 1.45 5.50 85.39 0.47 1.92 16 23 N -0.79 -49.17 11.73 21.88 0.26 -48.92 16 24 Si 0.99 41.53 29.56 68.60 2.03 43.56 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.62 6.90 -2.38 -0.02 1.61 16 30 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 32 H 0.08 1.78 8.12 -2.38 -0.02 1.76 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 2.19 6.38 -2.39 -0.02 2.17 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.08 2.38 8.09 -2.39 -0.02 2.36 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.15 3.80 5.42 -2.91 -0.02 3.78 16 42 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.13 5.18 6.20 -2.91 -0.02 5.16 16 45 H 0.28 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -84.16 361.43 2.07 -82.09 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 1.00 Total: 31.89 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.83 Total: -19.89 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -3.86 Total: -71.55 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -1.92 Total: -66.09 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -84.16 2.07 -82.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.359 kcal (2) G-P(sol) polarization free energy of solvation -84.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds