Wall clock time and date at job start Tue Mar 31 2020 12:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 110.00216 * 2 1
4 4 C 1.54332 * 109.88248 * 121.09123 * 2 1 3
5 5 H 1.09001 * 110.86965 * 23.17757 * 4 2 1
6 6 C 1.52996 * 110.71746 * 259.97784 * 4 2 1
7 7 O 1.42906 * 109.46672 * 180.02562 * 6 4 2
8 8 C 1.55150 * 102.94228 * 141.61102 * 4 2 1
9 9 C 1.54913 * 101.58084 * 324.49727 * 8 4 2
10 10 N 1.47019 * 109.88571 * 238.89777 * 2 1 3
11 11 C 1.34781 * 125.64848 * 61.60634 * 10 2 1
12 12 O 1.21285 * 119.99449 * 0.02562 * 11 10 2
13 13 C 1.50693 * 120.00157 * 180.02562 * 11 10 2
14 14 C 1.50707 * 109.47065 * 180.02562 * 13 11 10
15 15 C 1.38294 * 119.92896 * 269.72674 * 14 13 11
16 16 C 1.38107 * 120.06745 * 179.72778 * 15 14 13
17 17 C 1.38878 * 119.92834 * 0.54170 * 16 15 14
18 18 O 1.35744 * 120.07145 * 179.74967 * 17 16 15
19 19 C 1.34828 * 117.00442 * 174.43980 * 18 17 16
20 20 H 1.08005 * 119.99568 * 5.06590 * 19 18 17
21 21 C 1.38653 * 120.00317 * 185.05442 * 19 18 17
22 22 N 1.31557 * 120.00210 * 180.02562 * 21 19 18
23 23 Si 1.86800 * 119.99963 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.47228 * 89.99648 * 23 21 19
25 25 H 1.48497 * 109.47254 * 209.99569 * 23 21 19
26 26 H 1.48498 * 109.47083 * 329.99720 * 23 21 19
27 27 C 1.38884 * 119.86146 * 359.72862 * 17 16 15
28 28 C 1.38098 * 119.92928 * 0.02562 * 27 17 16
29 29 H 1.09004 * 109.47086 * 298.91201 * 1 2 3
30 30 H 1.09000 * 109.46492 * 58.90758 * 1 2 3
31 31 H 1.09001 * 109.47056 * 178.90938 * 1 2 3
32 32 H 1.08997 * 109.47537 * 60.02396 * 6 4 2
33 33 H 1.09005 * 109.47156 * 300.01458 * 6 4 2
34 34 H 0.96707 * 113.99657 * 179.97438 * 7 6 4
35 35 H 1.08996 * 111.01051 * 82.57433 * 8 4 2
36 36 H 1.09008 * 111.00385 * 206.42873 * 8 4 2
37 37 H 1.09008 * 110.36258 * 155.85322 * 9 8 4
38 38 H 1.08999 * 110.36719 * 278.06285 * 9 8 4
39 39 H 1.09006 * 109.47076 * 299.99696 * 13 11 10
40 40 H 1.08999 * 109.47454 * 60.00100 * 13 11 10
41 41 H 1.07998 * 119.96747 * 359.97438 * 15 14 13
42 42 H 1.07998 * 120.03360 * 180.27424 * 16 15 14
43 43 H 0.97001 * 120.00453 * 180.02562 * 22 21 19
44 44 H 1.07998 * 120.03348 * 179.97438 * 27 17 16
45 45 H 1.08001 * 119.96077 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9029 1.0242 0.0000
4 6 2.0549 -0.7495 1.2428
5 1 1.3065 -1.4458 1.6212
6 6 2.4732 0.2382 2.3339
7 8 2.9545 -0.4829 3.4699
8 6 3.2876 -1.5142 0.6926
9 6 2.8145 -1.8795 -0.7366
10 7 2.0301 -0.7142 -1.1838
11 6 1.8075 -0.3623 -2.4657
12 8 1.1437 0.6209 -2.7180
13 6 2.3834 -1.1904 -3.5852
14 6 1.9915 -0.5869 -4.9094
15 6 0.8229 -0.9872 -5.5312
16 6 0.4581 -0.4319 -6.7420
17 6 1.2718 0.5211 -7.3404
18 8 0.9186 1.0651 -8.5329
19 6 1.6912 2.0654 -9.0023
20 1 2.5922 2.3443 -8.4761
21 6 1.3290 2.7361 -10.1606
22 7 2.0831 3.7118 -10.6189
23 14 -0.2296 2.2540 -11.0705
24 1 -1.3720 3.0474 -10.5502
25 1 -0.0595 2.5236 -12.5208
26 1 -0.4963 0.8079 -10.8637
27 6 2.4476 0.9169 -6.7161
28 6 2.8042 0.3616 -5.5030
29 1 -0.3633 0.4969 0.8996
30 1 -0.3632 0.5307 -0.8801
31 1 -0.3633 -1.0275 -0.0196
32 1 1.6146 0.8434 2.6247
33 1 3.2628 0.8865 1.9538
34 1 3.2383 0.0812 4.2024
35 1 4.1655 -0.8689 0.6605
36 1 3.4852 -2.4110 1.2799
37 1 3.6717 -2.0340 -1.3920
38 1 2.1902 -2.7726 -0.7128
39 1 3.4702 -1.2083 -3.5020
40 1 1.9972 -2.2076 -3.5206
41 1 0.1929 -1.7319 -5.0676
42 1 -0.4568 -0.7417 -7.2250
43 1 1.8296 4.1812 -11.4290
44 1 3.0827 1.6576 -7.1792
45 1 3.7186 0.6688 -5.0172
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362453507.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:56
Heat of formation + Delta-G solvation = -88.058463 kcal
Electronic energy + Delta-G solvation = -26211.686389 eV
Core-core repulsion = 22387.803594 eV
Total energy + Delta-G solvation = -3823.882795 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.50442 -39.17222 -38.19074 -36.82384 -36.35840 -32.87003 -32.37497 -31.60102
-31.13524 -30.18708 -27.89457 -26.72820 -24.97504 -24.10842 -22.98935 -22.04823
-21.03715 -20.36174 -19.03388 -17.84226 -17.72414 -17.21194 -17.03560 -16.62106
-15.47693 -15.20384 -14.90775 -14.66140 -14.27003 -14.12228 -13.95543 -13.78384
-13.60208 -13.53473 -13.31872 -13.02060 -12.75123 -12.62026 -12.44663 -12.25815
-12.16404 -11.87312 -11.61835 -11.32916 -11.25310 -11.17771 -11.01332 -10.87771
-10.71390 -10.63321 -10.40451 -10.11813 -9.65213 -9.33915 -8.81909 -8.76771
-8.18583 -7.25880 -6.37572 -4.03824 2.18484 2.20784 2.75369 2.89081
3.25039 3.29217 3.43554 3.62858 4.16225 4.21888 4.27489 4.45272
4.59026 4.81263 4.83510 4.89763 4.92535 4.96870 5.03923 5.08816
5.15424 5.19953 5.23914 5.28165 5.33117 5.39692 5.52721 5.62477
5.64497 5.70664 5.74476 5.80521 5.90228 6.07212 6.17903 6.27582
6.38100 6.61509 6.84489 7.07367 7.13851 7.27215 7.35534 7.45319
7.66721 7.85014 8.08454 8.28880 8.97903 9.60934 10.70183
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.030616 B = 0.002274 C = 0.002265
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 914.326753 B =12308.582711 C =12360.072483
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.142 3.858
3 H 0.075 0.925
4 C -0.098 4.098
5 H 0.093 0.907
6 C 0.086 3.914
7 O -0.572 6.572
8 C -0.122 4.122
9 C 0.097 3.903
10 N -0.624 5.624
11 C 0.527 3.473
12 O -0.517 6.517
13 C -0.076 4.076
14 C -0.161 4.161
15 C -0.061 4.061
16 C -0.191 4.191
17 C 0.162 3.838
18 O -0.218 6.218
19 C -0.388 4.388
20 H 0.106 0.894
21 C 0.062 3.938
22 N -0.881 5.881
23 Si 0.906 3.094
24 H -0.274 1.274
25 H -0.283 1.283
26 H -0.260 1.260
27 C -0.219 4.219
28 C -0.058 4.058
29 H 0.061 0.939
30 H 0.074 0.926
31 H 0.056 0.944
32 H 0.049 0.951
33 H 0.050 0.950
34 H 0.381 0.619
35 H 0.076 0.924
36 H 0.086 0.914
37 H 0.079 0.921
38 H 0.069 0.931
39 H 0.092 0.908
40 H 0.092 0.908
41 H 0.110 0.890
42 H 0.116 0.884
43 H 0.279 0.721
44 H 0.133 0.867
45 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.372 -11.640 25.977 28.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.039 3.961
3 H 0.093 0.907
4 C -0.117 4.117
5 H 0.111 0.889
6 C 0.008 3.992
7 O -0.378 6.378
8 C -0.160 4.160
9 C -0.026 4.026
10 N -0.361 5.361
11 C 0.316 3.684
12 O -0.390 6.390
13 C -0.116 4.116
14 C -0.162 4.162
15 C -0.080 4.080
16 C -0.210 4.210
17 C 0.110 3.890
18 O -0.123 6.123
19 C -0.464 4.464
20 H 0.124 0.876
21 C -0.141 4.141
22 N -0.519 5.519
23 Si 0.731 3.269
24 H -0.199 1.199
25 H -0.208 1.208
26 H -0.184 1.184
27 C -0.238 4.238
28 C -0.076 4.076
29 H 0.080 0.920
30 H 0.093 0.907
31 H 0.075 0.925
32 H 0.068 0.932
33 H 0.068 0.932
34 H 0.228 0.772
35 H 0.095 0.905
36 H 0.105 0.895
37 H 0.098 0.902
38 H 0.087 0.913
39 H 0.110 0.890
40 H 0.110 0.890
41 H 0.128 0.872
42 H 0.134 0.866
43 H 0.089 0.911
44 H 0.150 0.850
45 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 1.692 -11.452 24.987 27.538
hybrid contribution -0.334 0.540 -0.008 0.635
sum 1.358 -10.912 24.979 27.292
Atomic orbital electron populations
1.22151 0.94493 1.02392 1.03075 1.21357 0.94703 0.96179 0.83870
0.90716 1.22257 0.98519 0.97622 0.93276 0.88904 1.22113 0.97722
0.93172 0.86207 1.86451 1.86014 1.37960 1.27350 1.22774 0.97364
1.01191 0.94627 1.22351 0.95464 0.89002 0.95757 1.48684 1.53780
1.28713 1.04965 1.20720 0.80365 0.85657 0.81647 1.90742 1.38539
1.27015 1.82747 1.20412 1.01516 0.98813 0.90868 1.18710 0.98328
1.03254 0.95932 1.20394 0.95057 0.98427 0.94094 1.20147 1.01235
1.02019 0.97610 1.19118 0.92438 0.92179 0.85275 1.83567 1.51899
1.46972 1.29900 1.20772 1.06308 1.09547 1.09731 0.87642 1.24467
0.98773 0.94641 0.96189 1.69648 1.38120 1.21124 1.22999 0.86176
0.82208 0.80310 0.78175 1.19898 1.20825 1.18374 1.21220 0.99279
1.05501 0.97801 1.20557 0.98009 0.94637 0.94415 0.91958 0.90717
0.92479 0.93228 0.93224 0.77206 0.90546 0.89521 0.90245 0.91302
0.88998 0.88996 0.87245 0.86556 0.91107 0.84970 0.87583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.64 9.10 37.16 0.34 -1.30 16
2 C 0.14 1.38 3.06 -66.95 -0.20 1.18 16
3 H 0.07 0.79 7.82 -51.93 -0.41 0.39 16
4 C -0.10 -0.70 2.76 -88.79 -0.24 -0.95 16
5 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16
6 C 0.09 0.53 6.33 37.16 0.24 0.76 16
7 O -0.57 -3.60 13.51 -35.23 -0.48 -4.08 16
8 C -0.12 -0.79 6.39 -24.58 -0.16 -0.95 16
9 C 0.10 0.71 6.69 -2.53 -0.02 0.69 16
10 N -0.62 -6.73 3.06 -163.01 -0.50 -7.23 16
11 C 0.53 7.52 7.64 -10.99 -0.08 7.43 16
12 O -0.52 -9.77 15.08 5.55 0.08 -9.68 16
13 C -0.08 -0.97 4.83 -29.03 -0.14 -1.11 16
14 C -0.16 -2.79 4.38 -104.58 -0.46 -3.24 16
15 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16
16 C -0.19 -3.98 9.99 -39.39 -0.39 -4.38 16
17 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16
18 O -0.22 -5.96 8.59 0.07 0.00 -5.96 16
19 C -0.39 -11.24 9.95 30.89 0.31 -10.93 16
20 H 0.11 3.12 5.44 -52.48 -0.29 2.83 16
21 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16
22 N -0.88 -25.94 13.96 55.48 0.77 -25.17 16
23 Si 0.91 22.20 28.62 -169.99 -4.86 17.33 16
24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
26 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16
27 C -0.22 -4.95 9.17 -39.39 -0.36 -5.31 16
28 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.07 0.98 6.90 -51.93 -0.36 0.62 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
33 H 0.05 0.29 8.10 -51.93 -0.42 -0.13 16
34 H 0.38 0.79 9.12 45.56 0.42 1.21 16
35 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16
36 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16
37 H 0.08 0.49 7.48 -51.92 -0.39 0.10 16
38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
39 H 0.09 0.97 7.79 -51.93 -0.40 0.57 16
40 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16
41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16
42 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16
43 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16
44 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16
45 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16
LS Contribution 371.38 15.07 5.60 5.60
Total: -1.00 -34.68 371.38 -7.59 -42.27
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: -5.91 Total: 2.66 kcal
Atomic # 6 Polarization: -13.44 SS G_CDS: -2.30 Total: -15.75 kcal
Atomic # 7 Polarization: -32.67 SS G_CDS: 0.28 Total: -32.40 kcal
Atomic # 8 Polarization: -19.33 SS G_CDS: -0.39 Total: -19.72 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.33 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -34.68 -7.59 -42.27 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362453507.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.785 kcal
(2) G-P(sol) polarization free energy of solvation -34.680 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds