Wall clock time and date at job start Tue Mar 31 2020 12:00:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08999 * 110.00216 * 2 1
4 4 C 1.54332 * 109.88248 * 121.09123 * 2 1 3
5 5 H 1.09001 * 110.86965 * 23.17757 * 4 2 1
6 6 C 1.52996 * 110.71746 * 259.97784 * 4 2 1
7 7 O 1.42906 * 109.46672 * 180.02562 * 6 4 2
8 8 C 1.55150 * 102.94228 * 141.61102 * 4 2 1
9 9 C 1.54913 * 101.58084 * 324.49727 * 8 4 2
10 10 N 1.47019 * 109.88571 * 238.89777 * 2 1 3
11 11 C 1.34781 * 125.64848 * 61.60634 * 10 2 1
12 12 O 1.21285 * 119.99449 * 0.02562 * 11 10 2
13 13 C 1.50693 * 120.00157 * 180.02562 * 11 10 2
14 14 C 1.50707 * 109.47065 * 180.02562 * 13 11 10
15 15 C 1.38294 * 119.92896 * 269.72674 * 14 13 11
16 16 C 1.38107 * 120.06745 * 179.72778 * 15 14 13
17 17 C 1.38878 * 119.92834 * 0.54170 * 16 15 14
18 18 O 1.35744 * 120.07145 * 179.74967 * 17 16 15
19 19 C 1.34828 * 117.00442 * 174.43980 * 18 17 16
20 20 H 1.08005 * 119.99568 * 5.06590 * 19 18 17
21 21 C 1.38653 * 120.00317 * 185.05442 * 19 18 17
22 22 N 1.31557 * 120.00210 * 180.02562 * 21 19 18
23 23 Si 1.86800 * 119.99963 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.47228 * 89.99648 * 23 21 19
25 25 H 1.48497 * 109.47254 * 209.99569 * 23 21 19
26 26 H 1.48498 * 109.47083 * 329.99720 * 23 21 19
27 27 C 1.38884 * 119.86146 * 359.72862 * 17 16 15
28 28 C 1.38098 * 119.92928 * 0.02562 * 27 17 16
29 29 H 1.09004 * 109.47086 * 298.91201 * 1 2 3
30 30 H 1.09000 * 109.46492 * 58.90758 * 1 2 3
31 31 H 1.09001 * 109.47056 * 178.90938 * 1 2 3
32 32 H 1.08997 * 109.47537 * 60.02396 * 6 4 2
33 33 H 1.09005 * 109.47156 * 300.01458 * 6 4 2
34 34 H 0.96707 * 113.99657 * 179.97438 * 7 6 4
35 35 H 1.08996 * 111.01051 * 82.57433 * 8 4 2
36 36 H 1.09008 * 111.00385 * 206.42873 * 8 4 2
37 37 H 1.09008 * 110.36258 * 155.85322 * 9 8 4
38 38 H 1.08999 * 110.36719 * 278.06285 * 9 8 4
39 39 H 1.09006 * 109.47076 * 299.99696 * 13 11 10
40 40 H 1.08999 * 109.47454 * 60.00100 * 13 11 10
41 41 H 1.07998 * 119.96747 * 359.97438 * 15 14 13
42 42 H 1.07998 * 120.03360 * 180.27424 * 16 15 14
43 43 H 0.97001 * 120.00453 * 180.02562 * 22 21 19
44 44 H 1.07998 * 120.03348 * 179.97438 * 27 17 16
45 45 H 1.08001 * 119.96077 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9029 1.0242 0.0000
4 6 2.0549 -0.7495 1.2428
5 1 1.3065 -1.4458 1.6212
6 6 2.4732 0.2382 2.3339
7 8 2.9545 -0.4829 3.4699
8 6 3.2876 -1.5142 0.6926
9 6 2.8145 -1.8795 -0.7366
10 7 2.0301 -0.7142 -1.1838
11 6 1.8075 -0.3623 -2.4657
12 8 1.1437 0.6209 -2.7180
13 6 2.3834 -1.1904 -3.5852
14 6 1.9915 -0.5869 -4.9094
15 6 0.8229 -0.9872 -5.5312
16 6 0.4581 -0.4319 -6.7420
17 6 1.2718 0.5211 -7.3404
18 8 0.9186 1.0651 -8.5329
19 6 1.6912 2.0654 -9.0023
20 1 2.5922 2.3443 -8.4761
21 6 1.3290 2.7361 -10.1606
22 7 2.0831 3.7118 -10.6189
23 14 -0.2296 2.2540 -11.0705
24 1 -1.3720 3.0474 -10.5502
25 1 -0.0595 2.5236 -12.5208
26 1 -0.4963 0.8079 -10.8637
27 6 2.4476 0.9169 -6.7161
28 6 2.8042 0.3616 -5.5030
29 1 -0.3633 0.4969 0.8996
30 1 -0.3632 0.5307 -0.8801
31 1 -0.3633 -1.0275 -0.0196
32 1 1.6146 0.8434 2.6247
33 1 3.2628 0.8865 1.9538
34 1 3.2383 0.0812 4.2024
35 1 4.1655 -0.8689 0.6605
36 1 3.4852 -2.4110 1.2799
37 1 3.6717 -2.0340 -1.3920
38 1 2.1902 -2.7726 -0.7128
39 1 3.4702 -1.2083 -3.5020
40 1 1.9972 -2.2076 -3.5206
41 1 0.1929 -1.7319 -5.0676
42 1 -0.4568 -0.7417 -7.2250
43 1 1.8296 4.1812 -11.4290
44 1 3.0827 1.6576 -7.1792
45 1 3.7186 0.6688 -5.0172
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362453507.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:55
Heat of formation + Delta-G solvation = -112.593602 kcal
Electronic energy + Delta-G solvation = -26212.750312 eV
Core-core repulsion = 22387.803594 eV
Total energy + Delta-G solvation = -3824.946718 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.44707 -40.78857 -39.23933 -38.17942 -37.18817 -34.53770 -33.74456 -32.52367
-32.17604 -31.81445 -28.81640 -28.03291 -26.78062 -24.79607 -23.84693 -23.69960
-22.26278 -21.28202 -20.00122 -19.78822 -19.09298 -18.24063 -17.95456 -17.36054
-16.79045 -16.33254 -16.20119 -15.88681 -15.66594 -15.59899 -15.28091 -15.01814
-14.76458 -14.48789 -14.34866 -14.20902 -14.10179 -13.99237 -13.77297 -13.33557
-13.05651 -13.00209 -12.78759 -12.63143 -12.47290 -12.41729 -12.33354 -11.94941
-11.83581 -11.79257 -11.60370 -11.29219 -10.94943 -10.84215 -10.76156 -9.80138
-9.64064 -8.99358 -8.51231 -6.23789 0.57352 0.60074 1.29353 1.34258
1.50639 1.70584 1.99751 2.27159 2.76224 3.03048 3.12625 3.17159
3.60342 3.65287 3.83216 3.96139 4.01702 4.12962 4.15405 4.27683
4.33098 4.34910 4.40636 4.44255 4.53015 4.55922 4.64175 4.66254
4.71910 4.77054 4.83527 4.96006 4.97033 5.05867 5.14128 5.21821
5.24434 5.35168 5.36583 5.47346 5.56048 5.72753 5.78619 5.90026
6.23321 6.56742 6.82888 6.89984 7.26265 7.57507 8.60572
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.030616 B = 0.002274 C = 0.002265
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 914.326753 B =12308.582711 C =12360.072483
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.137 3.863
3 H 0.060 0.940
4 C -0.091 4.091
5 H 0.096 0.904
6 C 0.087 3.913
7 O -0.586 6.586
8 C -0.116 4.116
9 C 0.091 3.909
10 N -0.619 5.619
11 C 0.524 3.476
12 O -0.577 6.577
13 C -0.074 4.074
14 C -0.137 4.137
15 C -0.059 4.059
16 C -0.193 4.193
17 C 0.118 3.882
18 O -0.246 6.246
19 C -0.400 4.400
20 H 0.079 0.921
21 C 0.008 3.992
22 N -0.924 5.924
23 Si 0.973 3.027
24 H -0.268 1.268
25 H -0.264 1.264
26 H -0.262 1.262
27 C -0.238 4.238
28 C -0.064 4.064
29 H 0.079 0.921
30 H 0.038 0.962
31 H 0.063 0.937
32 H 0.055 0.945
33 H 0.050 0.950
34 H 0.398 0.602
35 H 0.074 0.926
36 H 0.100 0.900
37 H 0.098 0.902
38 H 0.087 0.913
39 H 0.123 0.877
40 H 0.131 0.869
41 H 0.152 0.848
42 H 0.129 0.871
43 H 0.285 0.715
44 H 0.107 0.893
45 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.159 -14.852 28.987 32.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.034 3.966
3 H 0.078 0.922
4 C -0.110 4.110
5 H 0.115 0.885
6 C 0.009 3.991
7 O -0.394 6.394
8 C -0.154 4.154
9 C -0.031 4.031
10 N -0.354 5.354
11 C 0.314 3.686
12 O -0.456 6.456
13 C -0.113 4.113
14 C -0.138 4.138
15 C -0.077 4.077
16 C -0.212 4.212
17 C 0.069 3.931
18 O -0.153 6.153
19 C -0.476 4.476
20 H 0.096 0.904
21 C -0.190 4.190
22 N -0.564 5.564
23 Si 0.795 3.205
24 H -0.193 1.193
25 H -0.189 1.189
26 H -0.186 1.186
27 C -0.257 4.257
28 C -0.082 4.082
29 H 0.098 0.902
30 H 0.057 0.943
31 H 0.082 0.918
32 H 0.073 0.927
33 H 0.069 0.931
34 H 0.248 0.752
35 H 0.093 0.907
36 H 0.119 0.881
37 H 0.116 0.884
38 H 0.105 0.895
39 H 0.141 0.859
40 H 0.149 0.851
41 H 0.169 0.831
42 H 0.147 0.853
43 H 0.095 0.905
44 H 0.124 0.876
45 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 1.520 -14.714 28.085 31.743
hybrid contribution -0.164 1.375 -0.518 1.478
sum 1.355 -13.340 27.567 30.655
Atomic orbital electron populations
1.22085 0.94873 1.02414 1.02202 1.21441 0.94453 0.95953 0.84755
0.92185 1.22176 0.98919 0.97564 0.92313 0.88548 1.22057 0.98046
0.92849 0.86134 1.86392 1.86109 1.38959 1.27963 1.22770 0.96772
1.01586 0.94273 1.22672 0.95986 0.88032 0.96386 1.48690 1.53007
1.29425 1.04227 1.20858 0.79789 0.84987 0.82957 1.90742 1.41437
1.29578 1.83814 1.20524 1.03627 0.99846 0.87293 1.19284 0.96715
1.00626 0.97156 1.20921 0.95546 0.98454 0.92742 1.20501 1.01186
1.00971 0.98525 1.19671 0.94049 0.93910 0.85438 1.83506 1.52298
1.47577 1.31952 1.20709 1.06094 1.10653 1.10167 0.90356 1.25312
1.02115 0.94640 0.96959 1.69731 1.40077 1.22591 1.24052 0.85193
0.78095 0.79604 0.77645 1.19293 1.18864 1.18637 1.21243 0.99083
1.05887 0.99465 1.20887 0.99466 0.94757 0.93137 0.90245 0.94299
0.91790 0.92693 0.93133 0.75162 0.90697 0.88113 0.88418 0.89451
0.85882 0.85135 0.83057 0.85342 0.90548 0.87551 0.85076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.96 9.10 71.98 0.65 -2.30 16
2 C 0.14 2.39 3.06 45.35 0.14 2.53 16
3 H 0.06 1.23 7.82 -2.39 -0.02 1.21 16
4 C -0.09 -1.04 2.76 -9.61 -0.03 -1.06 16
5 H 0.10 1.08 7.86 -2.39 -0.02 1.06 16
6 C 0.09 0.86 6.33 71.98 0.46 1.31 16
7 O -0.59 -5.72 13.51 -148.98 -2.01 -7.74 16
8 C -0.12 -1.06 6.39 31.99 0.20 -0.86 16
9 C 0.09 0.90 6.69 86.86 0.58 1.48 16
10 N -0.62 -11.40 3.06 -788.04 -2.42 -13.82 16
11 C 0.52 13.49 7.64 87.65 0.67 14.16 16
12 O -0.58 -21.36 15.08 -3.04 -0.05 -21.41 16
13 C -0.07 -1.53 4.83 29.10 0.14 -1.39 16
14 C -0.14 -4.35 4.38 -19.83 -0.09 -4.43 16
15 C -0.06 -1.95 9.69 22.25 0.22 -1.73 16
16 C -0.19 -7.94 9.99 22.39 0.22 -7.71 16
17 C 0.12 5.92 6.65 22.58 0.15 6.07 16
18 O -0.25 -14.08 8.59 -22.66 -0.19 -14.28 16
19 C -0.40 -24.69 9.95 67.92 0.68 -24.01 16
20 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16
21 C 0.01 0.47 5.49 84.83 0.47 0.94 16
22 N -0.92 -56.91 13.96 21.61 0.30 -56.61 16
23 Si 0.97 47.16 28.62 68.60 1.96 49.12 16
24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16
25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16
26 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16
27 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16
28 C -0.06 -2.42 9.69 22.25 0.22 -2.20 16
29 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16
30 H 0.04 1.02 6.90 -2.39 -0.02 1.00 16
31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
33 H 0.05 0.49 8.10 -2.38 -0.02 0.47 16
34 H 0.40 0.63 9.12 -74.05 -0.68 -0.04 16
35 H 0.07 0.74 8.02 -2.39 -0.02 0.72 16
36 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16
37 H 0.10 0.66 7.48 -2.38 -0.02 0.65 16
38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16
39 H 0.12 1.89 7.79 -2.38 -0.02 1.88 16
40 H 0.13 1.82 8.08 -2.39 -0.02 1.80 16
41 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16
42 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16
43 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16
44 H 0.11 5.50 5.64 -2.91 -0.02 5.49 16
45 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16
Total: -1.00 -81.48 371.38 2.81 -78.67
By element:
Atomic # 1 Polarization: 16.01 SS G_CDS: 0.33 Total: 16.33 kcal
Atomic # 6 Polarization: -35.15 SS G_CDS: 4.88 Total: -30.27 kcal
Atomic # 7 Polarization: -68.32 SS G_CDS: -2.11 Total: -70.43 kcal
Atomic # 8 Polarization: -41.17 SS G_CDS: -2.25 Total: -43.42 kcal
Atomic # 14 Polarization: 47.16 SS G_CDS: 1.96 Total: 49.12 kcal
Total: -81.48 2.81 -78.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362453507.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.923 kcal
(2) G-P(sol) polarization free energy of solvation -81.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.670 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds