Wall clock time and date at job start Tue Mar 31 2020 12:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99400 * 2 1 4 4 C 1.54328 * 109.78330 * 121.16486 * 2 1 3 5 5 H 1.09002 * 110.67459 * 215.87749 * 4 2 1 6 6 C 1.53001 * 110.84973 * 339.03238 * 4 2 1 7 7 O 1.42897 * 109.47177 * 180.14468 * 6 4 2 8 8 C 1.55162 * 103.02089 * 97.49574 * 4 2 1 9 9 C 1.54908 * 101.57974 * 35.30565 * 8 4 2 10 10 N 1.47026 * 109.88028 * 238.90774 * 2 1 3 11 11 C 1.34777 * 125.64727 * 59.55988 * 10 2 1 12 12 O 1.21280 * 120.00044 * 359.71516 * 11 10 2 13 13 C 1.50692 * 119.99671 * 179.71734 * 11 10 2 14 14 C 1.50702 * 109.47303 * 179.97438 * 13 11 10 15 15 C 1.38329 * 119.96453 * 89.99817 * 14 13 11 16 16 C 1.38283 * 120.13944 * 180.02562 * 15 14 13 17 17 C 1.38119 * 120.06537 * 359.97438 * 16 15 14 18 18 C 1.38852 * 119.93331 * 0.02766 * 17 16 15 19 19 O 1.35760 * 120.06971 * 179.97438 * 18 17 16 20 20 C 1.34826 * 116.99608 * 5.53126 * 19 18 17 21 21 H 1.08002 * 120.00245 * 354.94777 * 20 19 18 22 22 C 1.38655 * 119.99912 * 174.94392 * 20 19 18 23 23 N 1.31557 * 120.00161 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99925 * 359.72210 * 22 20 19 25 25 H 1.48505 * 109.46697 * 90.00039 * 24 22 20 26 26 H 1.48494 * 109.47310 * 210.00081 * 24 22 20 27 27 H 1.48498 * 109.47034 * 330.00674 * 24 22 20 28 28 C 1.38079 * 119.96813 * 270.27930 * 14 13 11 29 29 H 1.08996 * 109.47471 * 179.64280 * 1 2 3 30 30 H 1.09006 * 109.46717 * 299.64199 * 1 2 3 31 31 H 1.08997 * 109.47299 * 59.63428 * 1 2 3 32 32 H 1.08999 * 109.46907 * 300.14294 * 6 4 2 33 33 H 1.08995 * 109.47492 * 60.13982 * 6 4 2 34 34 H 0.96702 * 114.00682 * 179.97438 * 7 6 4 35 35 H 1.09002 * 111.00001 * 277.23827 * 8 4 2 36 36 H 1.09001 * 111.03962 * 153.39638 * 8 4 2 37 37 H 1.08998 * 110.36998 * 204.15272 * 9 8 4 38 38 H 1.09009 * 110.45872 * 81.87627 * 9 8 4 39 39 H 1.08999 * 109.47710 * 60.00124 * 13 11 10 40 40 H 1.09000 * 109.47748 * 299.99354 * 13 11 10 41 41 H 1.07999 * 119.93136 * 0.04582 * 15 14 13 42 42 H 1.07993 * 119.96362 * 180.02562 * 16 15 14 43 43 H 1.08005 * 120.03198 * 180.02562 * 17 16 15 44 44 H 0.97001 * 119.99882 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.03456 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7515 1.2426 5 1 2.9601 -0.2828 1.6225 6 6 0.9803 -0.8127 2.3325 7 8 1.4951 -1.5104 3.4684 8 6 2.3562 -2.1697 0.6913 9 6 2.8612 -1.8465 -0.7370 10 7 2.0300 -0.7140 -1.1840 11 6 1.7752 -0.3843 -2.4658 12 8 1.0745 0.5729 -2.7179 13 6 2.3611 -1.2051 -3.5855 14 6 1.9270 -0.6311 -4.9096 15 6 2.6960 0.3384 -5.5278 16 6 2.3008 0.8680 -6.7425 17 6 1.1365 0.4298 -7.3425 18 6 0.3624 -0.5432 -6.7245 19 8 -0.7828 -0.9756 -7.3115 20 6 -1.0532 -0.5054 -8.5458 21 1 -0.4155 0.2449 -8.9895 22 6 -2.1498 -0.9851 -9.2456 23 7 -2.4134 -0.5267 -10.4503 24 14 -3.2482 -2.2886 -8.4814 25 1 -4.3375 -1.6310 -7.7156 26 1 -3.8359 -3.1314 -9.5535 27 1 -2.4444 -3.1394 -7.5674 28 6 0.7590 -1.0691 -5.5016 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8866 32 1 0.7004 0.1996 2.6241 33 1 0.1038 -1.3364 1.9511 34 1 0.8680 -1.5871 4.2005 35 1 1.4522 -2.7778 0.6578 36 1 3.1327 -2.6598 1.2787 37 1 2.7177 -2.7047 -1.3934 38 1 3.9125 -1.5593 -0.7135 39 1 2.0107 -2.2340 -3.5037 40 1 3.4489 -1.1855 -3.5199 41 1 3.6072 0.6821 -5.0609 42 1 2.9036 1.6244 -7.2228 43 1 0.8286 0.8435 -8.2914 44 1 -3.1804 -0.8626 -10.9399 45 1 0.1568 -1.8230 -5.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362763512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:03 Heat of formation + Delta-G solvation = -83.815544 kcal Electronic energy + Delta-G solvation = -26490.721902 eV Core-core repulsion = 22667.023094 eV Total energy + Delta-G solvation = -3823.698808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60029 -39.20200 -38.23882 -36.77468 -36.35213 -33.06144 -32.35053 -31.77950 -31.36014 -29.40044 -27.69333 -26.68556 -25.19842 -24.82148 -23.17797 -21.76116 -21.00764 -19.89409 -19.03482 -18.01793 -17.66309 -17.13817 -17.03787 -16.28995 -15.58873 -15.39797 -15.15448 -14.83959 -14.50444 -13.98903 -13.85255 -13.71440 -13.67624 -13.39106 -13.38669 -12.96507 -12.65059 -12.56033 -12.52993 -12.30428 -12.13901 -11.90863 -11.63369 -11.34867 -11.25790 -11.06430 -10.95862 -10.80022 -10.74093 -10.70054 -10.30551 -10.11690 -9.68794 -9.34240 -8.82818 -8.78559 -8.09715 -7.30760 -6.36579 -4.03149 2.04327 2.33612 2.72199 2.87189 3.25647 3.28527 3.43037 3.64794 4.17209 4.20368 4.27847 4.45276 4.61200 4.76414 4.78101 4.86418 4.89763 4.99443 5.04672 5.10961 5.12870 5.17412 5.27001 5.28551 5.37438 5.38803 5.50900 5.60372 5.62447 5.73340 5.78785 5.86349 5.88928 6.06388 6.16814 6.29205 6.31105 6.58007 6.83879 7.14950 7.16950 7.26248 7.36436 7.42168 7.65880 7.85930 8.09413 8.24899 8.99025 9.62435 10.71325 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002750 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.880819 B =10179.671391 C =11060.546083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.077 0.923 4 C -0.097 4.097 5 H 0.090 0.910 6 C 0.085 3.915 7 O -0.575 6.575 8 C -0.120 4.120 9 C 0.096 3.904 10 N -0.624 5.624 11 C 0.531 3.469 12 O -0.515 6.515 13 C -0.089 4.089 14 C -0.035 4.035 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.160 3.840 19 O -0.220 6.220 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.174 4.174 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.381 0.619 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 -3.518 25.395 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.116 4.116 5 H 0.109 0.891 6 C 0.007 3.993 7 O -0.380 6.380 8 C -0.158 4.158 9 C -0.027 4.027 10 N -0.361 5.361 11 C 0.320 3.680 12 O -0.389 6.389 13 C -0.129 4.129 14 C -0.036 4.036 15 C -0.206 4.206 16 C -0.094 4.094 17 C -0.236 4.236 18 C 0.109 3.891 19 O -0.125 6.125 20 C -0.463 4.463 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.184 1.184 28 C -0.193 4.193 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.228 0.772 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.459 -3.168 24.627 26.943 hybrid contribution -0.989 -0.334 0.447 1.135 sum 9.471 -3.502 25.074 27.031 Atomic orbital electron populations 1.22261 0.94761 1.02429 1.03351 1.21363 0.94838 0.95950 0.83798 0.90515 1.22190 0.99166 0.96940 0.93348 0.89133 1.22263 0.95444 0.95635 0.85966 1.86439 1.44874 1.79224 1.27481 1.22761 1.02336 0.96180 0.94526 1.22380 0.94970 0.89468 0.95872 1.48648 1.51594 1.30922 1.04893 1.20441 0.80699 0.85204 0.81628 1.90750 1.37082 1.28311 1.82749 1.20572 1.01779 0.99638 0.90863 1.18668 0.94732 0.96883 0.93308 1.20417 1.01385 1.01214 0.97589 1.20733 0.95709 0.98176 0.94814 1.21293 0.97416 1.01841 1.03093 1.19004 0.85921 0.92253 0.91957 1.83567 1.33988 1.63546 1.31420 1.20767 1.13358 1.23194 0.89006 0.87659 1.24453 0.96964 0.97912 0.94704 1.69650 1.28717 1.42993 1.10673 0.86185 0.80427 0.81342 0.78961 1.19927 1.20869 1.18405 1.19927 0.98174 1.05099 0.96094 0.92344 0.91784 0.90474 0.93236 0.92714 0.77242 0.90524 0.89507 0.90210 0.91174 0.88402 0.88399 0.87764 0.87172 0.84988 0.91139 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 7.93 37.16 0.29 -1.44 16 2 C 0.14 1.41 3.45 -66.95 -0.23 1.18 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.10 -0.72 3.15 -88.78 -0.28 -1.00 16 5 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 6 C 0.08 0.54 5.18 37.16 0.19 0.73 16 7 O -0.57 -3.75 13.50 -35.23 -0.48 -4.23 16 8 C -0.12 -0.81 6.39 -24.58 -0.16 -0.97 16 9 C 0.10 0.72 6.69 -2.53 -0.02 0.70 16 10 N -0.62 -6.83 3.08 -163.01 -0.50 -7.33 16 11 C 0.53 7.72 7.63 -10.99 -0.08 7.64 16 12 O -0.52 -9.82 14.92 5.56 0.08 -9.74 16 13 C -0.09 -1.17 4.83 -29.04 -0.14 -1.31 16 14 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.19 -3.34 9.70 -39.53 -0.38 -3.73 16 16 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 17 C -0.22 -4.94 9.17 -39.40 -0.36 -5.30 16 18 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 19 O -0.22 -6.02 8.59 0.03 0.00 -6.02 16 20 C -0.39 -11.24 9.95 30.89 0.31 -10.93 16 21 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 22 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 23 N -0.88 -25.99 13.96 55.48 0.77 -25.22 16 24 Si 0.91 22.21 28.62 -169.99 -4.86 17.34 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16 28 C -0.17 -3.65 9.65 -39.39 -0.38 -4.03 16 29 H 0.06 0.58 7.52 -51.93 -0.39 0.19 16 30 H 0.06 0.50 6.70 -51.93 -0.35 0.16 16 31 H 0.08 1.06 6.74 -51.93 -0.35 0.71 16 32 H 0.05 0.28 7.58 -51.93 -0.39 -0.12 16 33 H 0.05 0.34 6.62 -51.93 -0.34 -0.01 16 34 H 0.38 0.89 9.12 45.56 0.42 1.31 16 35 H 0.08 0.54 8.02 -51.93 -0.42 0.13 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.52 7.48 -51.93 -0.39 0.13 16 38 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.10 1.10 7.79 -51.93 -0.40 0.69 16 40 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 3.12 5.64 -52.48 -0.30 2.82 16 44 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -34.83 366.04 -7.63 -42.46 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.72 Total: 3.30 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.45 Total: -16.08 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.27 Total: -32.55 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.39 Total: -19.99 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.83 -7.63 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.356 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds