Wall clock time and date at job start Tue Mar 31 2020 12:01:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09005 * 110.40723 * 2 1
4 4 C 1.55127 * 110.34768 * 122.43749 * 2 1 3
5 5 H 1.09000 * 111.19035 * 37.95847 * 4 2 1
6 6 C 1.53002 * 110.90777 * 274.04416 * 4 2 1
7 7 O 1.42904 * 109.46764 * 181.51913 * 6 4 2
8 8 C 1.55158 * 101.48623 * 156.05996 * 4 2 1
9 9 C 1.54322 * 102.94150 * 324.33930 * 8 4 2
10 10 N 1.47021 * 107.27265 * 22.18846 * 9 8 4
11 11 C 1.34785 * 125.64545 * 181.02133 * 10 9 8
12 12 O 1.21273 * 119.99524 * 180.02562 * 11 10 9
13 13 C 1.50694 * 120.00025 * 0.03246 * 11 10 9
14 14 C 1.50700 * 109.47001 * 179.97438 * 13 11 10
15 15 C 1.38321 * 119.96474 * 270.01652 * 14 13 11
16 16 C 1.38283 * 120.14125 * 179.97438 * 15 14 13
17 17 C 1.38114 * 120.06643 * 359.76777 * 16 15 14
18 18 C 1.38868 * 119.92979 * 0.51359 * 17 16 15
19 19 O 1.35747 * 120.06663 * 179.74389 * 18 17 16
20 20 C 1.34833 * 117.00257 * 5.22954 * 19 18 17
21 21 H 1.07999 * 120.00198 * 354.92975 * 20 19 18
22 22 C 1.38661 * 119.99840 * 174.64477 * 20 19 18
23 23 N 1.31556 * 119.99706 * 180.27568 * 22 20 19
24 24 Si 1.86792 * 120.00015 * 0.28008 * 22 20 19
25 25 H 1.48507 * 109.47317 * 89.99804 * 24 22 20
26 26 H 1.48500 * 109.47171 * 209.99449 * 24 22 20
27 27 H 1.48498 * 109.47443 * 330.00063 * 24 22 20
28 28 C 1.38080 * 119.96775 * 89.99773 * 14 13 11
29 29 H 1.08998 * 109.46365 * 180.84354 * 1 2 3
30 30 H 1.09006 * 109.46898 * 300.83893 * 1 2 3
31 31 H 1.08995 * 109.47392 * 60.84445 * 1 2 3
32 32 H 1.09001 * 109.46942 * 301.52072 * 6 4 2
33 33 H 1.08998 * 109.47286 * 61.52181 * 6 4 2
34 34 H 0.96697 * 113.99453 * 179.97438 * 7 6 4
35 35 H 1.08998 * 110.71816 * 205.97355 * 8 4 2
36 36 H 1.08998 * 110.86991 * 82.76836 * 8 4 2
37 37 H 1.09002 * 109.88267 * 262.77036 * 9 8 4
38 38 H 1.08997 * 109.88093 * 141.61117 * 9 8 4
39 39 H 1.08996 * 109.47349 * 59.99715 * 13 11 10
40 40 H 1.09002 * 109.46763 * 299.99341 * 13 11 10
41 41 H 1.08000 * 119.92906 * 359.97438 * 15 14 13
42 42 H 1.07999 * 119.96278 * 180.02562 * 16 15 14
43 43 H 1.08002 * 120.03972 * 180.27228 * 17 16 15
44 44 H 0.97002 * 119.99996 * 180.02562 * 23 22 20
45 45 H 1.08003 * 120.03456 * 359.97438 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9101 1.0216 0.0000
4 6 2.0695 -0.7801 1.2275
5 1 1.4552 -1.6553 1.4392
6 6 2.1648 0.1297 2.4539
7 8 2.6972 -0.6093 3.5551
8 6 3.4799 -1.1971 0.7333
9 6 3.2526 -1.4723 -0.7681
10 7 2.0431 -0.7383 -1.1682
11 6 1.4973 -0.7363 -2.4006
12 8 0.4938 -0.0909 -2.6181
13 6 2.1337 -1.5359 -3.5080
14 6 1.3346 -1.3652 -4.7742
15 6 0.2955 -2.2330 -5.0577
16 6 -0.4405 -2.0794 -6.2182
17 6 -0.1430 -1.0552 -7.0958
18 6 0.9034 -0.1859 -6.8169
19 8 1.2016 0.8185 -7.6801
20 6 0.3774 0.9846 -8.7342
21 1 -0.4261 0.2841 -8.9072
22 6 0.5579 2.0583 -9.5929
23 7 -0.2495 2.2235 -10.6183
24 14 1.9477 3.2701 -9.2937
25 1 3.1660 2.8127 -10.0092
26 1 1.5525 4.6104 -9.7963
27 1 2.2296 3.3505 -7.8380
28 6 1.6402 -0.3423 -5.6500
29 1 -0.3632 -1.0276 0.0151
30 1 -0.3633 0.5268 0.8824
31 1 -0.3634 0.5006 -0.8974
32 1 2.8196 0.9722 2.2312
33 1 1.1719 0.4991 2.7104
34 1 2.7861 -0.0939 4.3683
35 1 3.8164 -2.0992 1.2441
36 1 4.1954 -0.3868 0.8727
37 1 3.1092 -2.5404 -0.9317
38 1 4.1082 -1.1187 -1.3434
39 1 2.1531 -2.5898 -3.2303
40 1 3.1526 -1.1842 -3.6707
41 1 0.0585 -3.0323 -4.3711
42 1 -1.2515 -2.7584 -6.4365
43 1 -0.7209 -0.9330 -7.9999
44 1 -0.1231 2.9743 -11.2192
45 1 2.4512 0.3354 -5.4277
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362763515.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:06
Heat of formation + Delta-G solvation = -85.038843 kcal
Electronic energy + Delta-G solvation = -26424.593892 eV
Core-core repulsion = 22600.842037 eV
Total energy + Delta-G solvation = -3823.751854 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.53580 -39.16718 -38.16684 -36.80048 -36.35343 -32.97557 -32.33784 -31.78146
-31.44444 -29.39465 -27.91481 -26.76046 -25.13065 -24.27691 -23.10473 -21.73526
-21.02001 -20.45686 -19.07116 -17.71578 -17.66042 -17.07650 -16.87028 -16.67256
-15.54354 -15.16100 -15.11582 -14.79087 -14.44618 -14.14381 -13.91522 -13.85432
-13.61950 -13.45649 -13.41427 -13.01603 -12.58709 -12.52071 -12.35314 -12.17435
-12.11608 -11.90379 -11.63742 -11.34795 -11.27326 -11.19973 -10.97292 -10.78977
-10.78134 -10.64913 -10.40467 -10.11214 -9.50138 -9.33220 -8.82263 -8.76032
-8.09297 -7.30255 -6.35996 -4.02588 2.04869 2.33929 2.72375 2.87130
3.26453 3.28203 3.44474 3.64680 4.18288 4.19185 4.28569 4.46343
4.60642 4.77260 4.81575 4.82456 4.91990 4.96100 5.02211 5.08913
5.15986 5.20760 5.26146 5.35363 5.36795 5.43107 5.55140 5.61188
5.65104 5.73646 5.80390 5.89158 5.94873 6.09190 6.17527 6.30731
6.41687 6.58345 6.84239 7.14443 7.15342 7.26680 7.36854 7.43625
7.66338 7.86417 8.09924 8.26815 8.99623 9.62940 10.71913
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.020502 B = 0.002640 C = 0.002504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1365.403305 B =10602.023733 C =11180.256245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.144 3.856
3 H 0.074 0.926
4 C -0.099 4.099
5 H 0.092 0.908
6 C 0.087 3.913
7 O -0.572 6.572
8 C -0.121 4.121
9 C 0.098 3.902
10 N -0.624 5.624
11 C 0.532 3.468
12 O -0.513 6.513
13 C -0.089 4.089
14 C -0.035 4.035
15 C -0.187 4.187
16 C -0.076 4.076
17 C -0.217 4.217
18 C 0.160 3.840
19 O -0.220 6.220
20 C -0.387 4.387
21 H 0.106 0.894
22 C 0.062 3.938
23 N -0.882 5.882
24 Si 0.905 3.095
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.260 1.260
28 C -0.173 4.173
29 H 0.055 0.945
30 H 0.057 0.943
31 H 0.092 0.908
32 H 0.049 0.951
33 H 0.050 0.950
34 H 0.381 0.619
35 H 0.085 0.915
36 H 0.076 0.924
37 H 0.070 0.930
38 H 0.071 0.929
39 H 0.097 0.903
40 H 0.098 0.902
41 H 0.104 0.896
42 H 0.110 0.890
43 H 0.132 0.868
44 H 0.278 0.722
45 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.873 -7.301 26.126 28.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.040 3.960
3 H 0.092 0.908
4 C -0.119 4.119
5 H 0.111 0.889
6 C 0.009 3.991
7 O -0.378 6.378
8 C -0.158 4.158
9 C -0.025 4.025
10 N -0.362 5.362
11 C 0.321 3.679
12 O -0.387 6.387
13 C -0.129 4.129
14 C -0.036 4.036
15 C -0.206 4.206
16 C -0.094 4.094
17 C -0.237 4.237
18 C 0.108 3.892
19 O -0.125 6.125
20 C -0.463 4.463
21 H 0.123 0.877
22 C -0.140 4.140
23 N -0.520 5.520
24 Si 0.731 3.269
25 H -0.199 1.199
26 H -0.209 1.209
27 H -0.184 1.184
28 C -0.193 4.193
29 H 0.074 0.926
30 H 0.076 0.924
31 H 0.111 0.889
32 H 0.067 0.933
33 H 0.069 0.931
34 H 0.228 0.772
35 H 0.103 0.897
36 H 0.095 0.905
37 H 0.088 0.912
38 H 0.089 0.911
39 H 0.116 0.884
40 H 0.116 0.884
41 H 0.122 0.878
42 H 0.128 0.872
43 H 0.150 0.850
44 H 0.089 0.911
45 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 7.412 -7.114 25.238 27.249
hybrid contribution 0.451 0.956 0.368 1.120
sum 7.863 -6.158 25.606 27.485
Atomic orbital electron populations
1.22212 0.93559 1.02841 1.03840 1.21769 0.95413 0.95112 0.83668
0.90770 1.22448 0.97503 0.99183 0.92733 0.88942 1.22054 0.97563
0.93193 0.86286 1.86459 1.87056 1.41975 1.22269 1.22609 0.96639
1.02875 0.93716 1.22070 0.87741 0.96887 0.95816 1.48602 1.28469
1.49736 1.09350 1.20420 0.84178 0.81836 0.81446 1.90705 1.24482
1.42403 1.81077 1.20576 0.99929 1.00769 0.91591 1.18665 0.96171
0.95496 0.93221 1.20410 0.99144 1.02078 0.98971 1.20732 0.98046
0.96800 0.93853 1.21295 1.01525 0.98193 1.02640 1.19001 0.92693
0.88350 0.89107 1.83565 1.49669 1.45644 1.33656 1.20768 1.11650
1.12790 1.01098 0.87660 1.24457 0.97940 0.96944 0.94709 1.69650
1.36903 1.31004 1.14464 0.86185 0.81386 0.79502 0.79866 1.19931
1.20865 1.18373 1.19929 1.03916 1.01086 0.94352 0.92567 0.92360
0.88928 0.93251 0.93145 0.77247 0.89657 0.90548 0.91191 0.91114
0.88445 0.88412 0.87786 0.87187 0.84995 0.91145 0.86897
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.84 8.71 37.16 0.32 -1.52 16
2 C 0.14 1.42 3.24 -66.30 -0.21 1.21 16
3 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16
4 C -0.10 -0.75 2.75 -88.35 -0.24 -1.00 16
5 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16
6 C 0.09 0.53 6.49 37.16 0.24 0.77 16
7 O -0.57 -3.66 13.51 -35.23 -0.48 -4.13 16
8 C -0.12 -0.80 6.28 -24.90 -0.16 -0.96 16
9 C 0.10 0.75 6.48 -3.07 -0.02 0.73 16
10 N -0.62 -6.94 3.24 -162.92 -0.53 -7.47 16
11 C 0.53 7.76 7.63 -10.98 -0.08 7.68 16
12 O -0.51 -9.68 13.68 5.56 0.08 -9.60 16
13 C -0.09 -1.18 5.02 -29.04 -0.15 -1.32 16
14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16
15 C -0.19 -3.34 9.70 -39.53 -0.38 -3.72 16
16 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16
17 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16
18 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16
19 O -0.22 -6.03 8.59 0.05 0.00 -6.03 16
20 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16
21 H 0.11 3.12 5.43 -52.49 -0.29 2.84 16
22 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16
23 N -0.88 -26.06 13.96 55.48 0.77 -25.29 16
24 Si 0.90 22.28 28.62 -169.99 -4.86 17.41 16
25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
27 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16
28 C -0.17 -3.65 9.65 -39.40 -0.38 -4.03 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16
31 H 0.09 1.34 5.89 -51.93 -0.31 1.03 16
32 H 0.05 0.26 8.11 -51.93 -0.42 -0.16 16
33 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16
34 H 0.38 0.79 9.12 45.56 0.42 1.20 16
35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.08 0.47 8.02 -51.93 -0.42 0.06 16
37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16
40 H 0.10 1.10 8.09 -51.93 -0.42 0.68 16
41 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16
42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16
43 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16
44 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16
45 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16
LS Contribution 370.25 15.07 5.58 5.58
Total: -1.00 -34.68 370.25 -7.68 -42.37
By element:
Atomic # 1 Polarization: 9.10 SS G_CDS: -5.92 Total: 3.18 kcal
Atomic # 6 Polarization: -13.69 SS G_CDS: -2.33 Total: -16.02 kcal
Atomic # 7 Polarization: -33.00 SS G_CDS: 0.25 Total: -32.75 kcal
Atomic # 8 Polarization: -19.37 SS G_CDS: -0.40 Total: -19.77 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.41 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -34.68 -7.68 -42.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362763515.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.673 kcal
(2) G-P(sol) polarization free energy of solvation -34.681 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.354 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds