Wall clock time and date at job start Tue Mar 31 2020 12:01:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09005 * 110.40723 * 2 1
4 4 C 1.55127 * 110.34768 * 122.43749 * 2 1 3
5 5 H 1.09000 * 111.19035 * 37.95847 * 4 2 1
6 6 C 1.53002 * 110.90777 * 274.04416 * 4 2 1
7 7 O 1.42904 * 109.46764 * 181.51913 * 6 4 2
8 8 C 1.55158 * 101.48623 * 156.05996 * 4 2 1
9 9 C 1.54322 * 102.94150 * 324.33930 * 8 4 2
10 10 N 1.47021 * 107.27265 * 22.18846 * 9 8 4
11 11 C 1.34785 * 125.64545 * 181.02133 * 10 9 8
12 12 O 1.21273 * 119.99524 * 180.02562 * 11 10 9
13 13 C 1.50694 * 120.00025 * 0.03246 * 11 10 9
14 14 C 1.50700 * 109.47001 * 179.97438 * 13 11 10
15 15 C 1.38321 * 119.96474 * 270.01652 * 14 13 11
16 16 C 1.38283 * 120.14125 * 179.97438 * 15 14 13
17 17 C 1.38114 * 120.06643 * 359.76777 * 16 15 14
18 18 C 1.38868 * 119.92979 * 0.51359 * 17 16 15
19 19 O 1.35747 * 120.06663 * 179.74389 * 18 17 16
20 20 C 1.34833 * 117.00257 * 5.22954 * 19 18 17
21 21 H 1.07999 * 120.00198 * 354.92975 * 20 19 18
22 22 C 1.38661 * 119.99840 * 174.64477 * 20 19 18
23 23 N 1.31556 * 119.99706 * 180.27568 * 22 20 19
24 24 Si 1.86792 * 120.00015 * 0.28008 * 22 20 19
25 25 H 1.48507 * 109.47317 * 89.99804 * 24 22 20
26 26 H 1.48500 * 109.47171 * 209.99449 * 24 22 20
27 27 H 1.48498 * 109.47443 * 330.00063 * 24 22 20
28 28 C 1.38080 * 119.96775 * 89.99773 * 14 13 11
29 29 H 1.08998 * 109.46365 * 180.84354 * 1 2 3
30 30 H 1.09006 * 109.46898 * 300.83893 * 1 2 3
31 31 H 1.08995 * 109.47392 * 60.84445 * 1 2 3
32 32 H 1.09001 * 109.46942 * 301.52072 * 6 4 2
33 33 H 1.08998 * 109.47286 * 61.52181 * 6 4 2
34 34 H 0.96697 * 113.99453 * 179.97438 * 7 6 4
35 35 H 1.08998 * 110.71816 * 205.97355 * 8 4 2
36 36 H 1.08998 * 110.86991 * 82.76836 * 8 4 2
37 37 H 1.09002 * 109.88267 * 262.77036 * 9 8 4
38 38 H 1.08997 * 109.88093 * 141.61117 * 9 8 4
39 39 H 1.08996 * 109.47349 * 59.99715 * 13 11 10
40 40 H 1.09002 * 109.46763 * 299.99341 * 13 11 10
41 41 H 1.08000 * 119.92906 * 359.97438 * 15 14 13
42 42 H 1.07999 * 119.96278 * 180.02562 * 16 15 14
43 43 H 1.08002 * 120.03972 * 180.27228 * 17 16 15
44 44 H 0.97002 * 119.99996 * 180.02562 * 23 22 20
45 45 H 1.08003 * 120.03456 * 359.97438 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9101 1.0216 0.0000
4 6 2.0695 -0.7801 1.2275
5 1 1.4552 -1.6553 1.4392
6 6 2.1648 0.1297 2.4539
7 8 2.6972 -0.6093 3.5551
8 6 3.4799 -1.1971 0.7333
9 6 3.2526 -1.4723 -0.7681
10 7 2.0431 -0.7383 -1.1682
11 6 1.4973 -0.7363 -2.4006
12 8 0.4938 -0.0909 -2.6181
13 6 2.1337 -1.5359 -3.5080
14 6 1.3346 -1.3652 -4.7742
15 6 0.2955 -2.2330 -5.0577
16 6 -0.4405 -2.0794 -6.2182
17 6 -0.1430 -1.0552 -7.0958
18 6 0.9034 -0.1859 -6.8169
19 8 1.2016 0.8185 -7.6801
20 6 0.3774 0.9846 -8.7342
21 1 -0.4261 0.2841 -8.9072
22 6 0.5579 2.0583 -9.5929
23 7 -0.2495 2.2235 -10.6183
24 14 1.9477 3.2701 -9.2937
25 1 3.1660 2.8127 -10.0092
26 1 1.5525 4.6104 -9.7963
27 1 2.2296 3.3505 -7.8380
28 6 1.6402 -0.3423 -5.6500
29 1 -0.3632 -1.0276 0.0151
30 1 -0.3633 0.5268 0.8824
31 1 -0.3634 0.5006 -0.8974
32 1 2.8196 0.9722 2.2312
33 1 1.1719 0.4991 2.7104
34 1 2.7861 -0.0939 4.3683
35 1 3.8164 -2.0992 1.2441
36 1 4.1954 -0.3868 0.8727
37 1 3.1092 -2.5404 -0.9317
38 1 4.1082 -1.1187 -1.3434
39 1 2.1531 -2.5898 -3.2303
40 1 3.1526 -1.1842 -3.6707
41 1 0.0585 -3.0323 -4.3711
42 1 -1.2515 -2.7584 -6.4365
43 1 -0.7209 -0.9330 -7.9999
44 1 -0.1231 2.9743 -11.2192
45 1 2.4512 0.3354 -5.4277
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362763515.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:05
Heat of formation + Delta-G solvation = -109.592400 kcal
Electronic energy + Delta-G solvation = -26425.658614 eV
Core-core repulsion = 22600.842037 eV
Total energy + Delta-G solvation = -3824.816576 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.49998 -40.79066 -39.19810 -38.18513 -37.17602 -34.49753 -33.99594 -32.87165
-32.24488 -31.07947 -28.90475 -27.82416 -27.15622 -24.97746 -23.96739 -23.31173
-22.40667 -21.31124 -20.13289 -19.60987 -18.79317 -18.19636 -17.81790 -17.45910
-16.87247 -16.77500 -16.11414 -15.92425 -15.78573 -15.61851 -15.25599 -15.01436
-14.71995 -14.46619 -14.41698 -14.26857 -14.15779 -13.92678 -13.74706 -13.19438
-13.05043 -12.97938 -12.78223 -12.66950 -12.54103 -12.40603 -12.35941 -11.94840
-11.90076 -11.85618 -11.56176 -11.32166 -10.92791 -10.82763 -10.61997 -9.67768
-9.63519 -9.07546 -8.51106 -6.23909 0.46948 0.68683 1.28462 1.33823
1.49727 1.66845 1.96795 2.26888 2.75942 2.99019 3.13119 3.17528
3.58870 3.61670 3.77024 3.95053 4.06108 4.12743 4.23659 4.28421
4.31210 4.34602 4.39580 4.44082 4.50505 4.53946 4.59939 4.66853
4.68747 4.74491 4.82724 4.92937 4.96231 5.05924 5.17070 5.22616
5.26181 5.31659 5.38195 5.54578 5.63759 5.71372 5.75623 5.90310
6.23327 6.53823 6.83085 6.92429 7.23501 7.57920 8.60735
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.020502 B = 0.002640 C = 0.002504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1365.403305 B =10602.023733 C =11180.256245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.138 3.862
3 H 0.075 0.925
4 C -0.092 4.092
5 H 0.085 0.915
6 C 0.089 3.911
7 O -0.588 6.588
8 C -0.114 4.114
9 C 0.090 3.910
10 N -0.620 5.620
11 C 0.527 3.473
12 O -0.569 6.569
13 C -0.085 4.085
14 C -0.027 4.027
15 C -0.170 4.170
16 C -0.077 4.077
17 C -0.240 4.240
18 C 0.119 3.881
19 O -0.247 6.247
20 C -0.400 4.400
21 H 0.080 0.920
22 C 0.009 3.991
23 N -0.924 5.924
24 Si 0.972 3.028
25 H -0.261 1.261
26 H -0.266 1.266
27 H -0.267 1.267
28 C -0.180 4.180
29 H 0.049 0.951
30 H 0.077 0.923
31 H 0.055 0.945
32 H 0.059 0.941
33 H 0.055 0.945
34 H 0.399 0.601
35 H 0.096 0.904
36 H 0.083 0.917
37 H 0.088 0.912
38 H 0.086 0.914
39 H 0.137 0.863
40 H 0.123 0.877
41 H 0.146 0.854
42 H 0.141 0.859
43 H 0.108 0.892
44 H 0.285 0.715
45 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.219 -8.806 29.703 32.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.035 3.965
3 H 0.093 0.907
4 C -0.112 4.112
5 H 0.104 0.896
6 C 0.011 3.989
7 O -0.396 6.396
8 C -0.152 4.152
9 C -0.032 4.032
10 N -0.355 5.355
11 C 0.317 3.683
12 O -0.448 6.448
13 C -0.124 4.124
14 C -0.027 4.027
15 C -0.189 4.189
16 C -0.095 4.095
17 C -0.259 4.259
18 C 0.071 3.929
19 O -0.155 6.155
20 C -0.476 4.476
21 H 0.097 0.903
22 C -0.190 4.190
23 N -0.565 5.565
24 Si 0.794 3.206
25 H -0.186 1.186
26 H -0.191 1.191
27 H -0.192 1.192
28 C -0.199 4.199
29 H 0.068 0.932
30 H 0.096 0.904
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.073 0.927
34 H 0.249 0.751
35 H 0.114 0.886
36 H 0.102 0.898
37 H 0.106 0.894
38 H 0.104 0.896
39 H 0.155 0.845
40 H 0.141 0.859
41 H 0.164 0.836
42 H 0.158 0.842
43 H 0.126 0.874
44 H 0.094 0.906
45 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 9.794 -8.664 28.886 31.708
hybrid contribution -0.322 1.181 -0.435 1.300
sum 9.471 -7.482 28.451 30.906
Atomic orbital electron populations
1.22108 0.94731 1.02141 1.02914 1.21875 0.94552 0.95595 0.84472
0.90744 1.22341 0.97842 0.98724 0.92267 0.89646 1.22006 0.98164
0.92923 0.85819 1.86399 1.87046 1.42952 1.23219 1.22610 0.95993
1.03629 0.92942 1.22381 0.86572 0.97555 0.96655 1.48629 1.29053
1.49195 1.08584 1.20580 0.83647 0.81452 0.82603 1.90712 1.27011
1.44885 1.82193 1.20667 0.99972 1.03150 0.88606 1.19191 0.95935
0.93513 0.94095 1.20982 0.97468 1.02168 0.98255 1.21103 0.98896
0.95930 0.93583 1.21323 1.01698 0.99866 1.03031 1.19576 0.94543
0.88568 0.90259 1.83503 1.50093 1.47702 1.34156 1.20721 1.11710
1.12858 1.02315 0.90271 1.25297 1.00572 0.98658 0.94426 1.69732
1.38844 1.32245 1.15633 0.85206 0.78551 0.77677 0.79194 1.18574
1.19106 1.19182 1.20242 1.03779 1.02219 0.93671 0.93178 0.90374
0.92616 0.92289 0.92718 0.75130 0.88590 0.89836 0.89390 0.89623
0.84492 0.85919 0.83636 0.84162 0.87440 0.90560 0.86166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.44 8.71 71.98 0.63 -2.82 16
2 C 0.14 2.45 3.24 45.55 0.15 2.60 16
3 H 0.07 1.34 8.04 -2.38 -0.02 1.32 16
4 C -0.09 -1.13 2.75 -9.32 -0.03 -1.16 16
5 H 0.09 1.19 8.07 -2.39 -0.02 1.17 16
6 C 0.09 0.83 6.49 71.98 0.47 1.30 16
7 O -0.59 -5.74 13.51 -148.98 -2.01 -7.75 16
8 C -0.11 -1.07 6.28 31.78 0.20 -0.87 16
9 C 0.09 0.99 6.48 86.73 0.56 1.55 16
10 N -0.62 -11.99 3.24 -787.75 -2.55 -14.54 16
11 C 0.53 14.10 7.63 87.65 0.67 14.77 16
12 O -0.57 -21.23 13.68 -3.01 -0.04 -21.27 16
13 C -0.08 -1.90 5.02 29.10 0.15 -1.75 16
14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16
15 C -0.17 -5.55 9.70 22.30 0.22 -5.34 16
16 C -0.08 -2.89 10.04 22.25 0.22 -2.67 16
17 C -0.24 -11.38 9.17 22.39 0.21 -11.18 16
18 C 0.12 6.02 6.65 22.58 0.15 6.17 16
19 O -0.25 -14.23 8.59 -22.74 -0.20 -14.42 16
20 C -0.40 -24.73 9.95 67.92 0.68 -24.05 16
21 H 0.08 5.13 5.43 -2.91 -0.02 5.11 16
22 C 0.01 0.52 5.49 84.84 0.47 0.98 16
23 N -0.92 -56.95 13.96 21.62 0.30 -56.65 16
24 Si 0.97 47.27 28.62 68.60 1.96 49.23 16
25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16
26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
27 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16
28 C -0.18 -7.52 9.65 22.39 0.22 -7.31 16
29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.08 1.28 8.09 -2.38 -0.02 1.26 16
31 H 0.05 1.64 5.89 -2.39 -0.01 1.63 16
32 H 0.06 0.44 8.11 -2.39 -0.02 0.43 16
33 H 0.05 0.46 8.09 -2.39 -0.02 0.44 16
34 H 0.40 0.51 9.12 -74.06 -0.68 -0.16 16
35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16
36 H 0.08 0.70 8.02 -2.39 -0.02 0.68 16
37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
39 H 0.14 2.03 8.08 -2.39 -0.02 2.01 16
40 H 0.12 2.20 8.09 -2.39 -0.02 2.18 16
41 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16
42 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16
43 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16
44 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16
45 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16
Total: -1.00 -81.21 370.25 2.65 -78.56
By element:
Atomic # 1 Polarization: 17.25 SS G_CDS: 0.33 Total: 17.57 kcal
Atomic # 6 Polarization: -35.59 SS G_CDS: 4.86 Total: -30.73 kcal
Atomic # 7 Polarization: -68.94 SS G_CDS: -2.25 Total: -71.19 kcal
Atomic # 8 Polarization: -41.19 SS G_CDS: -2.25 Total: -43.44 kcal
Atomic # 14 Polarization: 47.27 SS G_CDS: 1.96 Total: 49.23 kcal
Total: -81.21 2.65 -78.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362763515.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.030 kcal
(2) G-P(sol) polarization free energy of solvation -81.209 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.563 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.592 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds