Wall clock time and date at job start Tue Mar 31 2020 12:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.50553 * 2 1 4 4 C 1.53045 * 109.50168 * 239.92194 * 2 1 3 5 5 N 1.46847 * 109.52304 * 180.91832 * 4 2 1 6 6 C 1.46895 * 110.99639 * 185.80107 * 5 4 2 7 7 C 1.50707 * 109.47133 * 169.70221 * 6 5 4 8 8 C 1.38299 * 119.93145 * 269.72953 * 7 6 5 9 9 C 1.38095 * 120.06776 * 179.72755 * 8 7 6 10 10 C 1.38882 * 119.93079 * 0.54208 * 9 8 7 11 11 O 1.35751 * 120.07114 * 179.74986 * 10 9 8 12 12 C 1.34825 * 117.00250 * 174.44397 * 11 10 9 13 13 H 1.08000 * 119.99644 * 5.05245 * 12 11 10 14 14 C 1.38653 * 120.00125 * 185.05726 * 12 11 10 15 15 N 1.31557 * 119.99962 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99811 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46956 * 90.00527 * 16 14 12 18 18 H 1.48507 * 109.47089 * 209.99899 * 16 14 12 19 19 H 1.48493 * 109.47520 * 330.00550 * 16 14 12 20 20 C 1.38879 * 119.85917 * 359.73319 * 10 9 8 21 21 C 1.38099 * 119.93503 * 359.97438 * 20 10 9 22 22 C 1.46846 * 111.23054 * 61.67988 * 5 4 2 23 23 C 1.53031 * 109.52905 * 298.27775 * 22 5 4 24 24 C 1.53120 * 109.27606 * 59.17894 * 23 22 5 25 25 H 1.08997 * 109.52366 * 62.25540 * 24 23 22 26 26 C 1.50703 * 109.57423 * 182.41158 * 24 23 22 27 27 O 1.20830 * 119.99982 * 119.71380 * 26 24 23 28 28 O 1.34228 * 120.00215 * 299.71329 * 26 24 23 29 29 H 1.08997 * 109.46763 * 299.99512 * 1 2 3 30 30 H 1.08993 * 109.47339 * 60.00092 * 1 2 3 31 31 H 1.09004 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46210 * 300.89290 * 4 2 1 33 33 H 1.09001 * 109.45955 * 60.86444 * 4 2 1 34 34 H 1.09001 * 109.47059 * 289.70220 * 6 5 4 35 35 H 1.09002 * 109.47196 * 49.70208 * 6 5 4 36 36 H 1.07996 * 119.96324 * 359.97438 * 8 7 6 37 37 H 1.08004 * 120.03247 * 180.26956 * 9 8 7 38 38 H 0.96999 * 120.00169 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.03384 * 179.97438 * 20 10 9 40 40 H 1.07993 * 119.96655 * 179.97438 * 21 20 10 41 41 H 1.09003 * 109.46147 * 178.25582 * 22 5 4 42 42 H 1.08999 * 109.46305 * 58.29928 * 22 5 4 43 43 H 1.09000 * 109.50159 * 299.24032 * 23 22 5 44 44 H 1.08992 * 109.54033 * 179.13962 * 23 22 5 45 45 H 0.96694 * 117.00509 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2484 5 7 3.5092 -0.7425 -1.2378 6 6 4.0371 -1.3067 -2.4871 7 6 5.5259 -1.0814 -2.5504 8 6 6.0256 0.0681 -3.1350 9 6 7.3891 0.2800 -3.1896 10 6 8.2592 -0.6678 -2.6666 11 8 9.6003 -0.4647 -2.7232 12 6 10.3829 -1.3660 -2.0965 13 1 9.9428 -2.2455 -1.6503 14 6 11.7527 -1.1638 -2.0247 15 7 12.5163 -2.0430 -1.4127 16 14 12.5139 0.3572 -2.7971 17 1 12.5501 1.4546 -1.7973 18 1 13.8964 0.0473 -3.2421 19 1 11.7005 0.7789 -3.9657 20 6 7.7544 -1.8236 -2.0853 21 6 6.3897 -2.0270 -2.0285 22 6 4.0229 -1.4730 -0.0721 23 6 3.5713 -0.7716 1.2109 24 6 2.0413 -0.7235 1.2489 25 1 1.6453 -1.7387 1.2695 26 6 1.5900 0.0182 2.4807 27 8 0.9272 1.0227 2.3722 28 8 1.9242 -0.4370 3.6984 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6648 -1.7460 -1.2551 33 1 1.6905 -0.2015 -2.1391 34 1 3.8299 -2.3763 -2.5189 35 1 3.5594 -0.8186 -3.3366 36 1 5.3487 0.8025 -3.5458 37 1 7.7786 1.1799 -3.6423 38 1 13.4746 -1.9018 -1.3629 39 1 8.4285 -2.5628 -1.6782 40 1 5.9966 -2.9258 -1.5769 41 1 5.1121 -1.4963 -0.1092 42 1 3.6376 -2.4925 -0.0836 43 1 3.9679 0.2436 1.2295 44 1 3.9396 -1.3221 2.0764 45 1 1.6120 0.0726 4.4586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589398692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:43 Heat of formation + Delta-G solvation = -96.765769 kcal Electronic energy + Delta-G solvation = -26596.303556 eV Core-core repulsion = 22772.043184 eV Total energy + Delta-G solvation = -3824.260372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96921 -39.46555 -38.70860 -36.89145 -36.36104 -34.30048 -32.40042 -32.31083 -30.29461 -30.01674 -27.33044 -26.41688 -25.07477 -23.70488 -22.41962 -22.05887 -21.46899 -20.19970 -19.85874 -18.28175 -17.88033 -17.25036 -17.08652 -16.02189 -15.64003 -15.36520 -15.04826 -14.79211 -14.36777 -14.11197 -13.93755 -13.83817 -13.76518 -13.41819 -13.29865 -12.78363 -12.68640 -12.54149 -12.26348 -12.15664 -12.02863 -11.90430 -11.65101 -11.50546 -11.26315 -11.10613 -10.94975 -10.85523 -10.75405 -10.66903 -10.50741 -10.25275 -10.13334 -9.39438 -8.87764 -8.34165 -8.22415 -7.31856 -6.42761 -4.09349 1.94055 2.11955 2.17414 2.77170 3.21504 3.25499 3.40005 3.86781 4.23058 4.24697 4.48679 4.55577 4.68709 4.83710 4.86929 5.05444 5.09532 5.14600 5.19954 5.24802 5.28618 5.33274 5.42470 5.48080 5.55962 5.61099 5.66613 5.72496 5.78716 5.86913 5.94996 5.97475 6.02158 6.12046 6.13861 6.31553 6.33797 6.57082 6.78170 6.97548 7.04084 7.15284 7.25577 7.31399 7.60944 7.63913 7.78932 8.02966 8.92719 9.55453 10.64921 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.002655 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.822858 B =10542.534986 C =11206.120083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.072 4.072 3 H 0.089 0.911 4 C 0.062 3.938 5 N -0.535 5.535 6 C 0.113 3.887 7 C -0.171 4.171 8 C -0.054 4.054 9 C -0.194 4.194 10 C 0.161 3.839 11 O -0.218 6.218 12 C -0.389 4.389 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.221 4.221 21 C -0.068 4.068 22 C 0.054 3.946 23 C -0.107 4.107 24 C -0.076 4.076 25 H 0.104 0.896 26 C 0.485 3.515 27 O -0.512 6.512 28 O -0.516 6.516 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.546 1.117 4.377 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.090 4.090 3 H 0.108 0.892 4 C -0.066 4.066 5 N -0.259 5.259 6 C -0.013 4.013 7 C -0.172 4.172 8 C -0.073 4.073 9 C -0.213 4.213 10 C 0.109 3.891 11 O -0.123 6.123 12 C -0.465 4.465 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.241 4.241 21 C -0.087 4.087 22 C -0.074 4.074 23 C -0.145 4.145 24 C -0.095 4.095 25 H 0.122 0.878 26 C 0.327 3.673 27 O -0.400 6.400 28 O -0.328 6.328 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -22.053 1.750 3.991 22.479 hybrid contribution 0.016 -0.092 0.364 0.376 sum -22.037 1.658 4.355 22.525 Atomic orbital electron populations 1.22003 0.94429 1.01613 1.03441 1.21059 0.95701 1.00668 0.91613 0.89244 1.22135 0.87936 0.98685 0.97866 1.61951 1.06631 1.54759 1.02548 1.20793 0.92537 0.96873 0.91143 1.19128 0.93374 0.97340 1.07384 1.20451 0.93669 0.95772 0.97394 1.20220 0.92288 1.00091 1.08699 1.19140 0.83918 0.92913 0.93111 1.83575 1.12648 1.49582 1.66466 1.20760 0.88934 1.02607 1.34180 0.87652 1.24464 0.94942 0.98469 0.96114 1.69644 1.05979 1.35171 1.41011 0.86183 0.78164 0.82009 0.80565 1.19872 1.20807 1.18349 1.21234 0.95445 0.99802 1.07579 1.20641 0.92795 0.97572 0.97673 1.22154 1.02002 0.94192 0.89063 1.21605 0.91266 1.03133 0.98509 1.21232 0.98749 1.00180 0.89384 0.87796 1.23565 0.75910 0.83097 0.84698 1.90675 1.36720 1.25444 1.87128 1.84559 1.73547 1.57695 1.16970 0.90626 0.92240 0.93222 0.94928 0.90169 0.94786 0.90652 0.86905 0.86613 0.91052 0.85054 0.87647 0.88757 0.94913 0.90320 0.90096 0.73332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.91 37.16 0.33 -1.00 16 2 C -0.07 -0.68 2.02 -90.53 -0.18 -0.86 16 3 H 0.09 1.01 8.04 -51.93 -0.42 0.60 16 4 C 0.06 0.58 4.75 -3.83 -0.02 0.56 16 5 N -0.53 -6.21 4.64 -236.11 -1.10 -7.31 16 6 C 0.11 1.39 5.12 -4.98 -0.03 1.36 16 7 C -0.17 -2.67 4.90 -104.57 -0.51 -3.18 16 8 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 9 C -0.19 -3.77 9.99 -39.40 -0.39 -4.16 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 O -0.22 -5.70 8.59 0.06 0.00 -5.70 16 12 C -0.39 -10.86 9.95 30.89 0.31 -10.56 16 13 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 14 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 15 N -0.88 -25.28 13.96 55.48 0.77 -24.51 16 16 Si 0.91 21.59 28.62 -169.99 -4.86 16.72 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.26 -6.21 7.11 56.52 0.40 -5.80 16 20 C -0.22 -4.62 9.17 -39.40 -0.36 -4.98 16 21 C -0.07 -1.16 7.87 -39.61 -0.31 -1.47 16 22 C 0.05 0.61 5.16 -3.84 -0.02 0.59 16 23 C -0.11 -1.08 5.31 -26.65 -0.14 -1.22 16 24 C -0.08 -0.69 2.20 -91.65 -0.20 -0.89 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 26 C 0.48 4.74 7.35 36.01 0.26 5.00 16 27 O -0.51 -6.24 14.58 -18.75 -0.27 -6.52 16 28 O -0.52 -3.97 13.36 -39.25 -0.52 -4.50 16 29 H 0.07 0.75 5.74 -51.93 -0.30 0.46 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 34 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 35 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 40 H 0.11 1.55 7.95 -52.49 -0.42 1.13 16 41 H 0.09 1.26 5.75 -51.93 -0.30 0.96 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.41 1.48 9.10 45.56 0.41 1.89 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -31.01 362.67 -8.31 -39.32 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.78 Total: 4.05 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.01 Total: -17.03 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: -0.32 Total: -31.82 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.80 Total: -16.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.01 -8.31 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589398692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.449 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds