Wall clock time and date at job start Tue Mar 31 2020 12:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.50553 * 2 1 4 4 C 1.53045 * 109.50168 * 239.92194 * 2 1 3 5 5 N 1.46847 * 109.52304 * 180.91832 * 4 2 1 6 6 C 1.46895 * 110.99639 * 185.80107 * 5 4 2 7 7 C 1.50707 * 109.47133 * 169.70221 * 6 5 4 8 8 C 1.38299 * 119.93145 * 269.72953 * 7 6 5 9 9 C 1.38095 * 120.06776 * 179.72755 * 8 7 6 10 10 C 1.38882 * 119.93079 * 0.54208 * 9 8 7 11 11 O 1.35751 * 120.07114 * 179.74986 * 10 9 8 12 12 C 1.34825 * 117.00250 * 174.44397 * 11 10 9 13 13 H 1.08000 * 119.99644 * 5.05245 * 12 11 10 14 14 C 1.38653 * 120.00125 * 185.05726 * 12 11 10 15 15 N 1.31557 * 119.99962 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99811 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46956 * 90.00527 * 16 14 12 18 18 H 1.48507 * 109.47089 * 209.99899 * 16 14 12 19 19 H 1.48493 * 109.47520 * 330.00550 * 16 14 12 20 20 C 1.38879 * 119.85917 * 359.73319 * 10 9 8 21 21 C 1.38099 * 119.93503 * 359.97438 * 20 10 9 22 22 C 1.46846 * 111.23054 * 61.67988 * 5 4 2 23 23 C 1.53031 * 109.52905 * 298.27775 * 22 5 4 24 24 C 1.53120 * 109.27606 * 59.17894 * 23 22 5 25 25 H 1.08997 * 109.52366 * 62.25540 * 24 23 22 26 26 C 1.50703 * 109.57423 * 182.41158 * 24 23 22 27 27 O 1.20830 * 119.99982 * 119.71380 * 26 24 23 28 28 O 1.34228 * 120.00215 * 299.71329 * 26 24 23 29 29 H 1.08997 * 109.46763 * 299.99512 * 1 2 3 30 30 H 1.08993 * 109.47339 * 60.00092 * 1 2 3 31 31 H 1.09004 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46210 * 300.89290 * 4 2 1 33 33 H 1.09001 * 109.45955 * 60.86444 * 4 2 1 34 34 H 1.09001 * 109.47059 * 289.70220 * 6 5 4 35 35 H 1.09002 * 109.47196 * 49.70208 * 6 5 4 36 36 H 1.07996 * 119.96324 * 359.97438 * 8 7 6 37 37 H 1.08004 * 120.03247 * 180.26956 * 9 8 7 38 38 H 0.96999 * 120.00169 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.03384 * 179.97438 * 20 10 9 40 40 H 1.07993 * 119.96655 * 179.97438 * 21 20 10 41 41 H 1.09003 * 109.46147 * 178.25582 * 22 5 4 42 42 H 1.08999 * 109.46305 * 58.29928 * 22 5 4 43 43 H 1.09000 * 109.50159 * 299.24032 * 23 22 5 44 44 H 1.08992 * 109.54033 * 179.13962 * 23 22 5 45 45 H 0.96694 * 117.00509 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7230 -1.2484 5 7 3.5092 -0.7425 -1.2378 6 6 4.0371 -1.3067 -2.4871 7 6 5.5259 -1.0814 -2.5504 8 6 6.0256 0.0681 -3.1350 9 6 7.3891 0.2800 -3.1896 10 6 8.2592 -0.6678 -2.6666 11 8 9.6003 -0.4647 -2.7232 12 6 10.3829 -1.3660 -2.0965 13 1 9.9428 -2.2455 -1.6503 14 6 11.7527 -1.1638 -2.0247 15 7 12.5163 -2.0430 -1.4127 16 14 12.5139 0.3572 -2.7971 17 1 12.5501 1.4546 -1.7973 18 1 13.8964 0.0473 -3.2421 19 1 11.7005 0.7789 -3.9657 20 6 7.7544 -1.8236 -2.0853 21 6 6.3897 -2.0270 -2.0285 22 6 4.0229 -1.4730 -0.0721 23 6 3.5713 -0.7716 1.2109 24 6 2.0413 -0.7235 1.2489 25 1 1.6453 -1.7387 1.2695 26 6 1.5900 0.0182 2.4807 27 8 0.9272 1.0227 2.3722 28 8 1.9242 -0.4370 3.6984 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6648 -1.7460 -1.2551 33 1 1.6905 -0.2015 -2.1391 34 1 3.8299 -2.3763 -2.5189 35 1 3.5594 -0.8186 -3.3366 36 1 5.3487 0.8025 -3.5458 37 1 7.7786 1.1799 -3.6423 38 1 13.4746 -1.9018 -1.3629 39 1 8.4285 -2.5628 -1.6782 40 1 5.9966 -2.9258 -1.5769 41 1 5.1121 -1.4963 -0.1092 42 1 3.6376 -2.4925 -0.0836 43 1 3.9679 0.2436 1.2295 44 1 3.9396 -1.3221 2.0764 45 1 1.6120 0.0726 4.4586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589398692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:42 Heat of formation + Delta-G solvation = -116.905694 kcal Electronic energy + Delta-G solvation = -26597.176888 eV Core-core repulsion = 22772.043184 eV Total energy + Delta-G solvation = -3825.133704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73499 -40.92595 -39.79589 -38.31505 -37.15562 -35.29935 -34.39933 -33.09710 -31.79936 -31.35703 -28.18229 -27.76778 -26.58880 -24.73887 -23.64932 -23.11549 -22.48958 -21.52481 -20.61068 -19.77112 -19.04974 -19.00290 -17.84078 -16.83975 -16.66902 -16.49107 -16.46818 -16.05051 -15.64849 -15.52018 -15.36810 -15.03765 -14.77922 -14.60466 -14.28878 -14.17611 -14.07289 -14.00970 -13.42542 -13.07995 -13.00698 -12.92832 -12.75642 -12.57800 -12.40113 -12.39582 -12.23682 -12.08449 -11.91006 -11.84211 -11.68090 -11.32272 -11.24104 -11.05944 -10.88467 -9.74529 -9.21957 -8.91395 -8.49277 -6.21283 0.61072 0.66410 1.19426 1.31629 1.35591 1.52156 2.14163 2.28590 2.71006 2.96765 3.15851 3.31315 3.53771 3.71719 3.94171 3.98084 4.07905 4.18563 4.23973 4.36690 4.40822 4.44298 4.49924 4.60903 4.62591 4.66955 4.71531 4.80264 4.85262 4.87131 4.90394 5.02153 5.06003 5.12827 5.22407 5.30090 5.34517 5.39251 5.40773 5.61686 5.69029 5.79459 5.83802 5.93498 6.16674 6.24271 6.31981 6.85637 7.00899 7.61463 8.62469 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.002655 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.822858 B =10542.534986 C =11206.120083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 H 0.066 0.934 4 C 0.066 3.934 5 N -0.548 5.548 6 C 0.115 3.885 7 C -0.144 4.144 8 C -0.050 4.050 9 C -0.195 4.195 10 C 0.119 3.881 11 O -0.248 6.248 12 C -0.397 4.397 13 H 0.081 0.919 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.263 1.263 20 C -0.237 4.237 21 C -0.064 4.064 22 C 0.054 3.946 23 C -0.102 4.102 24 C -0.074 4.074 25 H 0.125 0.875 26 C 0.487 3.513 27 O -0.540 6.540 28 O -0.514 6.514 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.284 0.716 39 H 0.106 0.894 40 H 0.132 0.868 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.892 1.526 3.668 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 H 0.084 0.916 4 C -0.061 4.061 5 N -0.273 5.273 6 C -0.012 4.012 7 C -0.145 4.145 8 C -0.068 4.068 9 C -0.214 4.214 10 C 0.070 3.930 11 O -0.155 6.155 12 C -0.473 4.473 13 H 0.099 0.901 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.192 1.192 19 H -0.187 1.187 20 C -0.256 4.256 21 C -0.082 4.082 22 C -0.074 4.074 23 C -0.140 4.140 24 C -0.093 4.093 25 H 0.142 0.858 26 C 0.331 3.669 27 O -0.431 6.431 28 O -0.327 6.327 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.150 0.850 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -25.450 2.155 3.302 25.753 hybrid contribution 0.659 -0.255 0.657 0.965 sum -24.790 1.900 3.958 25.176 Atomic orbital electron populations 1.21929 0.93538 1.02447 1.02969 1.20991 0.96330 0.99426 0.91955 0.91584 1.22159 0.86145 0.99725 0.98112 1.61861 1.08310 1.54975 1.02106 1.20828 0.89592 0.98349 0.92393 1.19645 0.95631 0.95632 1.03553 1.20898 0.92755 0.96683 0.96467 1.20522 0.93254 0.99665 1.07969 1.19683 0.83242 0.94733 0.95324 1.83516 1.14154 1.49617 1.68251 1.20702 0.89685 1.02519 1.34440 0.90125 1.25261 0.95284 1.01466 0.96848 1.69727 1.06464 1.37155 1.43217 0.85231 0.77653 0.78421 0.79499 1.19192 1.19217 1.18732 1.21239 0.97046 0.99123 1.08226 1.20902 0.91155 0.99009 0.97174 1.22110 1.00525 0.95273 0.89488 1.21513 0.92104 1.01940 0.98415 1.21241 0.97786 1.01122 0.89122 0.85771 1.23676 0.75252 0.82561 0.85393 1.90675 1.38144 1.26657 1.87603 1.84519 1.73213 1.57860 1.17151 0.92328 0.91521 0.91676 0.93250 0.89055 0.93213 0.88432 0.83255 0.85762 0.90621 0.87629 0.85040 0.91261 0.93224 0.92289 0.89398 0.71300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.91 71.98 0.64 -1.50 16 2 C -0.07 -1.10 2.02 -10.74 -0.02 -1.12 16 3 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 4 C 0.07 0.96 4.75 86.33 0.41 1.37 16 5 N -0.55 -10.64 4.64 -900.92 -4.18 -14.83 16 6 C 0.11 2.27 5.12 85.56 0.44 2.71 16 7 C -0.14 -4.03 4.90 -19.83 -0.10 -4.13 16 8 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 9 C -0.20 -7.43 9.99 22.39 0.22 -7.20 16 10 C 0.12 5.56 6.65 22.58 0.15 5.71 16 11 O -0.25 -13.55 8.59 -22.71 -0.19 -13.75 16 12 C -0.40 -23.52 9.95 67.92 0.68 -22.84 16 13 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 14 C 0.01 0.56 5.49 84.83 0.47 1.02 16 15 N -0.92 -55.52 13.96 21.61 0.30 -55.22 16 16 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.24 -10.23 9.17 22.39 0.21 -10.03 16 21 C -0.06 -2.09 7.87 22.25 0.18 -1.92 16 22 C 0.05 1.06 5.16 86.32 0.45 1.51 16 23 C -0.10 -1.86 5.31 30.64 0.16 -1.69 16 24 C -0.07 -1.15 2.20 -11.46 -0.03 -1.17 16 25 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 26 C 0.49 8.69 7.35 71.24 0.52 9.21 16 27 O -0.54 -12.63 14.58 21.95 0.32 -12.31 16 28 O -0.51 -6.89 13.36 -51.40 -0.69 -7.58 16 29 H 0.06 1.07 5.74 -2.39 -0.01 1.05 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.17 8.01 -2.39 -0.02 1.15 16 34 H 0.05 0.88 8.06 -2.39 -0.02 0.87 16 35 H 0.10 1.59 7.92 -2.39 -0.02 1.57 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 39 H 0.11 5.05 5.64 -2.91 -0.02 5.04 16 40 H 0.13 3.59 7.95 -2.91 -0.02 3.56 16 41 H 0.07 1.73 5.75 -2.39 -0.01 1.71 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.43 2.30 9.10 -74.06 -0.67 1.63 16 Total: -1.00 -71.18 362.67 2.44 -68.74 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.33 Total: 18.49 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.59 Total: -31.35 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -3.88 Total: -70.04 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.56 Total: -33.63 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -71.18 2.44 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589398692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.165 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds