Wall clock time and date at job start Tue Mar 31 2020 12:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47528 * 2 1 4 4 C 1.50698 * 109.47238 * 239.99512 * 2 1 3 5 5 O 1.20828 * 120.00386 * 240.00376 * 4 2 1 6 6 O 1.34226 * 119.99985 * 59.99968 * 4 2 1 7 7 C 1.50704 * 109.46886 * 119.99861 * 2 1 3 8 8 C 1.38282 * 119.93237 * 59.72386 * 7 2 1 9 9 C 1.38109 * 120.07233 * 179.76554 * 8 7 2 10 10 C 1.38875 * 119.92580 * 0.51220 * 9 8 7 11 11 N 1.39929 * 120.06666 * 179.72152 * 10 9 8 12 12 C 1.34775 * 119.99708 * 213.30933 * 11 10 9 13 13 O 1.21291 * 120.00070 * 5.27336 * 12 11 10 14 14 C 1.50698 * 119.99920 * 185.28162 * 12 11 10 15 15 C 1.53003 * 109.47133 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46943 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47126 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47205 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99903 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99619 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00402 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99332 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47144 * 90.00075 * 22 20 18 24 24 H 1.48503 * 109.46734 * 209.99774 * 22 20 18 25 25 H 1.48501 * 109.47488 * 329.99453 * 22 20 18 26 26 C 1.38874 * 119.85991 * 359.74257 * 10 9 8 27 27 C 1.38112 * 119.93137 * 359.97438 * 26 10 9 28 28 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47091 * 300.00562 * 1 2 3 30 30 H 1.09006 * 109.46679 * 60.00284 * 1 2 3 31 31 H 0.96701 * 117.00583 * 179.97438 * 6 4 2 32 32 H 1.08000 * 119.95842 * 0.02562 * 8 7 2 33 33 H 1.07996 * 120.03726 * 180.25256 * 9 8 7 34 34 H 0.96993 * 120.00051 * 33.31566 * 11 10 9 35 35 H 1.09005 * 109.46921 * 299.99205 * 14 12 11 36 36 H 1.08999 * 109.47648 * 59.99352 * 14 12 11 37 37 H 1.08997 * 109.47184 * 299.99602 * 15 14 12 38 38 H 1.08999 * 109.47122 * 59.99968 * 15 14 12 39 39 H 1.09002 * 109.47781 * 299.99946 * 16 15 14 40 40 H 1.08999 * 109.47243 * 59.99767 * 16 15 14 41 41 H 1.08997 * 109.47359 * 300.00433 * 17 16 15 42 42 H 1.09009 * 109.47211 * 60.00420 * 17 16 15 43 43 H 0.97004 * 120.00153 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03331 * 179.97438 * 26 10 9 45 45 H 1.07993 * 119.96576 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2520 -2.4495 7 6 2.0323 -0.7104 1.2305 8 6 1.6926 -2.0326 1.4509 9 6 2.1553 -2.6879 2.5751 10 6 2.9538 -2.0143 3.4902 11 7 3.4194 -2.6737 4.6332 12 6 3.5803 -1.9929 5.7853 13 8 3.2320 -0.8334 5.8582 14 6 4.1931 -2.6724 6.9827 15 6 4.2613 -1.6854 8.1497 16 6 4.8828 -2.3755 9.3656 17 6 4.9516 -1.3883 10.5325 18 6 5.5633 -2.0682 11.7303 19 1 5.8724 -3.1010 11.6656 20 6 5.7282 -1.3716 12.9088 21 7 5.3522 -0.1139 12.9874 22 14 6.4870 -2.2143 14.3932 23 1 7.9603 -2.0299 14.3677 24 1 5.9351 -1.6183 15.6364 25 1 6.1688 -3.6643 14.3558 26 6 3.2887 -0.6849 3.2687 27 6 2.8277 -0.0370 2.1395 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.0542 -0.7408 -3.2088 32 1 1.0683 -2.5546 0.7408 33 1 1.8930 -3.7217 2.7446 34 1 3.6263 -3.6205 4.5964 35 1 3.5819 -3.5293 7.2664 36 1 5.1990 -3.0101 6.7336 37 1 4.8725 -0.8287 7.8659 38 1 3.2554 -1.3474 8.3990 39 1 4.2713 -3.2320 9.6495 40 1 5.8886 -2.7138 9.1166 41 1 5.5634 -0.5321 10.2485 42 1 3.9459 -1.0496 10.7817 43 1 5.4679 0.3760 13.8166 44 1 3.9092 -0.1582 3.9787 45 1 3.0882 0.9967 1.9665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589504824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:30 Heat of formation + Delta-G solvation = -129.883168 kcal Electronic energy + Delta-G solvation = -25043.402551 eV Core-core repulsion = 21217.706101 eV Total energy + Delta-G solvation = -3825.696450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09612 -40.45481 -38.80397 -36.56266 -35.64248 -34.87299 -33.63750 -32.62127 -31.18122 -30.09540 -28.63130 -25.92121 -25.34057 -23.58981 -22.96427 -22.14015 -20.76606 -20.18759 -20.00760 -18.43049 -17.93432 -17.20415 -16.78017 -16.33167 -16.14182 -15.88247 -15.69515 -14.91891 -14.62428 -14.41470 -14.09314 -13.94074 -13.84078 -13.57117 -13.34432 -12.91882 -12.73831 -12.61812 -12.31931 -12.20490 -11.92415 -11.76082 -11.62939 -11.58687 -11.33879 -10.99484 -10.82538 -10.56807 -10.51605 -10.43870 -10.43620 -9.88869 -9.62670 -9.24769 -9.09117 -8.99420 -8.30826 -8.23914 -5.95556 -3.98151 0.96340 1.24028 1.79256 2.49091 2.69621 2.93042 3.33938 3.40025 3.43150 3.62815 4.09410 4.38812 4.48576 4.59900 4.65903 4.78091 4.81340 4.92989 5.14266 5.19576 5.23544 5.26928 5.29945 5.39722 5.39905 5.47729 5.64313 5.75934 5.83642 6.01157 6.05656 6.09737 6.14999 6.26447 6.31001 6.33129 6.51357 6.80869 6.83150 6.98732 7.17755 7.25438 7.46962 7.73451 7.89021 8.05135 8.06760 8.47311 9.09480 9.65563 11.15704 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.044531 B = 0.001655 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.623145 B =16915.405874 C =17191.780906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 H 0.116 0.884 4 C 0.480 3.520 5 O -0.503 6.503 6 O -0.517 6.517 7 C -0.106 4.106 8 C -0.066 4.066 9 C -0.150 4.150 10 C 0.161 3.839 11 N -0.682 5.682 12 C 0.512 3.488 13 O -0.513 6.513 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.123 4.123 27 C -0.085 4.085 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.410 0.590 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.138 0.862 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -3.236 -32.146 33.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.055 4.055 3 H 0.134 0.866 4 C 0.321 3.679 5 O -0.390 6.390 6 O -0.329 6.329 7 C -0.107 4.107 8 C -0.085 4.085 9 C -0.171 4.171 10 C 0.066 3.934 11 N -0.328 5.328 12 C 0.301 3.699 13 O -0.387 6.387 14 C -0.178 4.178 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.144 4.144 27 C -0.103 4.103 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.268 0.732 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.575 -2.317 -31.504 33.008 hybrid contribution 0.817 -1.284 0.310 1.553 sum -8.758 -3.601 -31.193 32.599 Atomic orbital electron populations 1.21819 0.91060 1.03283 1.03777 1.19855 0.98340 1.00160 0.87119 0.86564 1.23470 0.77113 0.82658 0.84629 1.90758 1.35214 1.25917 1.87119 1.84526 1.72357 1.59174 1.16861 1.19172 1.01320 0.94735 0.95502 1.20602 0.98366 0.93483 0.96033 1.20827 0.99516 1.00685 0.96055 1.17839 0.95173 0.93071 0.87305 1.43798 1.66394 1.13668 1.08928 1.21351 0.77545 0.87265 0.83762 1.90724 1.47482 1.17115 1.83356 1.21832 1.01898 1.00871 0.93161 1.21474 1.02373 0.97237 0.93115 1.21652 0.98779 0.99430 0.94951 1.19101 0.97214 0.94090 0.91364 1.21284 1.40367 0.97834 0.96466 0.92743 1.25040 0.95775 0.94889 0.98848 1.69972 1.47730 1.08905 1.26809 0.86609 0.79395 0.79661 0.82404 1.20709 1.21251 1.19929 1.21142 1.01363 0.94033 0.97818 1.20863 0.96352 0.99691 0.93413 0.91869 0.90449 0.90910 0.73163 0.86194 0.85621 0.75315 0.88784 0.88666 0.91688 0.91680 0.93408 0.93416 0.96570 0.96561 0.93043 0.84412 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.93 37.16 0.33 -0.40 16 2 C -0.04 -0.24 3.00 -92.92 -0.28 -0.52 16 3 H 0.12 0.59 7.87 -51.93 -0.41 0.18 16 4 C 0.48 3.71 7.50 36.00 0.27 3.98 16 5 O -0.50 -5.57 15.88 -18.75 -0.30 -5.87 16 6 O -0.52 -2.67 13.33 -39.25 -0.52 -3.19 16 7 C -0.11 -0.98 4.40 -104.59 -0.46 -1.44 16 8 C -0.07 -0.63 7.93 -39.61 -0.31 -0.94 16 9 C -0.15 -1.48 9.96 -39.39 -0.39 -1.87 16 10 C 0.16 1.85 6.28 -83.69 -0.53 1.33 16 11 N -0.68 -7.17 5.34 -9.86 -0.05 -7.22 16 12 C 0.51 6.89 7.57 -10.99 -0.08 6.81 16 13 O -0.51 -8.89 13.67 5.55 0.08 -8.81 16 14 C -0.14 -1.73 5.70 -27.88 -0.16 -1.89 16 15 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 16 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.12 -1.52 8.66 -39.39 -0.34 -1.86 16 27 C -0.08 -0.86 9.66 -39.61 -0.38 -1.24 16 28 H 0.06 0.33 7.37 -51.93 -0.38 -0.05 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 31 H 0.41 0.56 9.10 45.56 0.41 0.97 16 32 H 0.12 0.98 7.51 -52.49 -0.39 0.59 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.41 2.90 8.82 -40.82 -0.36 2.54 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.14 1.90 6.41 -52.48 -0.34 1.57 16 45 H 0.13 1.00 7.94 -52.49 -0.42 0.59 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -36.70 381.59 -8.54 -45.25 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.07 Total: -0.28 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.14 Total: -15.77 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.68 Total: -33.94 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.75 Total: -17.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.70 -8.54 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589504824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.635 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds