Wall clock time and date at job start Tue Mar 31 2020 12:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47252 * 2 1 4 4 C 1.53003 * 109.47326 * 120.00119 * 2 1 3 5 5 C 1.50701 * 109.46756 * 295.00151 * 4 2 1 6 6 H 1.08004 * 120.00350 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99608 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99549 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47291 * 90.00159 * 9 7 5 11 11 H 1.48499 * 109.46959 * 210.00161 * 9 7 5 12 12 H 1.48493 * 109.47491 * 330.00000 * 9 7 5 13 13 C 1.53003 * 109.47581 * 240.00405 * 2 1 3 14 14 N 1.46897 * 109.47183 * 64.99517 * 13 2 1 15 15 C 1.46899 * 110.99875 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46627 * 35.00812 * 15 14 13 17 17 C 1.50693 * 109.47740 * 275.00559 * 15 14 13 18 18 O 1.20821 * 119.99984 * 359.97438 * 17 15 14 19 19 O 1.34229 * 120.00317 * 180.02562 * 17 15 14 20 20 C 1.50701 * 109.47064 * 155.00021 * 15 14 13 21 21 C 1.38293 * 120.11105 * 39.98096 * 20 15 14 22 22 C 1.37934 * 120.34618 * 179.87264 * 21 20 15 23 23 C 1.39282 * 120.24319 * 359.96010 * 22 21 20 24 24 C 1.38884 * 118.87810 * 0.37225 * 23 22 21 25 25 C 1.37741 * 120.78134 * 359.48106 * 24 23 22 26 26 C 1.51638 * 107.04617 * 179.44718 * 24 23 22 27 27 C 1.54706 * 101.95770 * 344.59228 * 26 24 23 28 28 O 1.36143 * 129.88949 * 180.99829 * 23 22 21 29 29 H 1.09000 * 109.47038 * 59.99869 * 1 2 3 30 30 H 1.09006 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47644 * 299.99746 * 1 2 3 32 32 H 1.09003 * 109.47094 * 54.99847 * 4 2 1 33 33 H 1.08995 * 109.47486 * 175.00539 * 4 2 1 34 34 H 0.97001 * 119.99732 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46502 * 304.99855 * 13 2 1 36 36 H 1.08997 * 109.47220 * 184.99968 * 13 2 1 37 37 H 1.00893 * 111.00521 * 303.95997 * 14 13 2 38 38 H 0.96700 * 116.99847 * 179.97438 * 19 17 15 39 39 H 1.07991 * 119.82735 * 359.85789 * 21 20 15 40 40 H 1.08002 * 119.88046 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00875 * 180.31553 * 25 24 23 42 42 H 1.09002 * 110.93994 * 102.77103 * 26 24 23 43 43 H 1.08997 * 110.93769 * 226.42283 * 26 24 23 44 44 H 1.09003 * 110.74785 * 143.62371 * 27 26 24 45 45 H 1.08994 * 110.75591 * 266.97977 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0798 0.9742 2.3757 7 6 1.9923 -0.4023 3.7283 8 7 2.6755 -1.5193 3.8511 9 14 1.4975 0.5621 5.2497 10 1 0.1700 0.0936 5.7227 11 1 2.5064 0.3519 6.3188 12 1 1.4226 2.0073 4.9170 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1259 -0.6264 -3.6671 16 1 2.0826 -1.7073 -3.5334 17 6 3.5477 -0.2112 -3.9447 18 8 4.1081 0.5591 -3.2016 19 8 4.1912 -0.6963 -5.0182 20 6 1.2507 -0.2283 -4.8276 21 6 0.8082 1.0764 -4.9473 22 6 0.0091 1.4466 -6.0089 23 6 -0.3587 0.5086 -6.9706 24 6 0.0862 -0.8001 -6.8358 25 6 0.8865 -1.1669 -5.7765 26 6 -0.4761 -1.5835 -8.0060 27 6 -1.5766 -0.6310 -8.5303 28 8 -1.1141 0.6594 -8.0932 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7994 1.2057 34 1 2.9228 -1.8422 4.7317 35 1 1.6055 -1.7197 -1.2952 36 1 3.1264 -0.7993 -1.2056 37 1 0.6530 0.1794 -2.4754 38 1 5.1017 -0.4007 -5.1548 39 1 1.0896 1.8092 -4.2057 40 1 -0.3326 2.4675 -6.0948 41 1 1.2295 -2.1871 -5.6866 42 1 0.2877 -1.7516 -8.7653 43 1 -0.9053 -2.5282 -7.6721 44 1 -1.6369 -0.6720 -9.6179 45 1 -2.5402 -0.8689 -8.0798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604129594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:59 Heat of formation + Delta-G solvation = -103.636676 kcal Electronic energy + Delta-G solvation = -26423.802327 eV Core-core repulsion = 22599.244011 eV Total energy + Delta-G solvation = -3824.558317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43387 -40.29053 -38.19951 -36.78692 -35.86469 -34.14206 -32.98449 -32.20726 -30.45231 -29.47875 -27.34318 -26.55976 -25.08099 -23.81724 -22.72301 -22.16270 -22.09767 -20.51105 -19.00818 -18.11004 -17.66975 -17.04095 -16.78952 -16.46052 -16.19058 -16.04813 -15.12693 -14.74274 -14.58359 -14.39162 -14.14730 -13.68766 -13.52262 -13.33244 -13.27176 -13.18465 -12.78205 -12.47961 -12.28051 -12.12747 -11.96673 -11.72582 -11.44311 -11.30974 -11.22534 -11.01793 -10.84239 -10.74515 -10.47790 -10.31911 -10.18529 -9.70150 -9.15781 -9.14496 -8.95379 -8.39572 -8.33296 -8.29796 -5.94888 -3.95703 0.96020 1.07043 2.32075 2.89833 2.95263 3.35168 3.41013 3.41636 3.45499 4.01910 4.15661 4.38827 4.45711 4.52232 4.56531 4.63345 4.87384 5.00778 5.13305 5.15598 5.29733 5.31368 5.36815 5.41090 5.42073 5.71755 5.72951 5.80324 5.91972 6.04977 6.08742 6.19721 6.25751 6.31844 6.44229 6.53410 6.58394 6.83432 6.88360 7.11265 7.17986 7.21667 7.48187 7.73082 7.88625 8.02162 8.05420 8.49119 9.10473 9.67458 11.16740 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002573 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.587643 B =10877.871314 C =11583.656514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.667 5.667 15 C 0.148 3.852 16 H 0.088 0.912 17 C 0.479 3.521 18 O -0.481 6.481 19 O -0.522 6.522 20 C -0.121 4.121 21 C -0.058 4.058 22 C -0.138 4.138 23 C 0.110 3.890 24 C -0.179 4.179 25 C -0.045 4.045 26 C -0.109 4.109 27 C 0.051 3.949 28 O -0.306 6.306 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.355 0.645 38 H 0.407 0.593 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 -1.092 -27.187 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.302 5.302 15 C 0.036 3.964 16 H 0.105 0.895 17 C 0.318 3.682 18 O -0.365 6.365 19 O -0.334 6.334 20 C -0.122 4.122 21 C -0.076 4.076 22 C -0.157 4.157 23 C 0.065 3.935 24 C -0.180 4.180 25 C -0.063 4.063 26 C -0.146 4.146 27 C -0.024 4.024 28 O -0.220 6.220 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.177 0.823 38 H 0.265 0.735 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.537 -0.491 -26.858 27.427 hybrid contribution -0.141 -0.335 0.781 0.861 sum -5.678 -0.827 -26.077 26.701 Atomic orbital electron populations 1.21757 0.96627 1.00467 1.00358 1.21202 0.94758 1.00369 0.93756 0.91296 1.19107 0.96228 0.95305 0.90291 1.21232 1.34545 1.08256 0.90933 0.92528 1.25021 0.95348 0.95115 0.99104 1.69965 1.39102 1.21308 1.23335 0.86626 0.78139 0.80493 0.82942 1.20788 1.21330 1.19873 1.22288 1.00928 0.94172 0.89021 1.60134 1.20024 1.50500 0.99572 1.19651 0.87607 0.98653 0.90443 0.89482 1.23322 0.88997 0.78178 0.77671 1.90755 1.67286 1.31847 1.46653 1.84510 1.32683 1.69385 1.46773 1.19324 1.01522 0.94396 0.96985 1.20915 0.94402 0.95837 0.96481 1.20275 1.02707 0.99447 0.93271 1.19638 0.92317 0.94303 0.87229 1.20651 1.03637 0.95173 0.98518 1.20118 0.95040 0.99436 0.91731 1.21777 0.98052 0.99177 0.95595 1.23864 0.97323 0.80135 1.01066 1.86855 1.65306 1.31286 1.38555 0.94989 0.93963 0.91722 0.96752 0.96597 0.93128 0.95358 0.91034 0.82283 0.73486 0.83736 0.85083 0.85391 0.89118 0.88963 0.87607 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.15 0.33 -2.14 16 2 C -0.08 -1.68 2.54 -90.62 -0.23 -1.91 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.11 4.84 -3.82 -0.02 1.09 16 14 N -0.67 -9.70 5.23 -109.19 -0.57 -10.27 16 15 C 0.15 1.85 2.73 -70.02 -0.19 1.66 16 16 H 0.09 0.99 7.67 -51.93 -0.40 0.59 16 17 C 0.48 6.59 7.49 36.00 0.27 6.86 16 18 O -0.48 -8.47 16.68 -18.75 -0.31 -8.78 16 19 O -0.52 -5.47 13.34 -39.26 -0.52 -5.99 16 20 C -0.12 -1.34 4.64 -104.56 -0.49 -1.83 16 21 C -0.06 -0.64 8.99 -39.67 -0.36 -1.00 16 22 C -0.14 -1.46 10.06 -39.30 -0.40 -1.86 16 23 C 0.11 1.18 7.04 -38.95 -0.27 0.91 16 24 C -0.18 -1.71 6.27 -104.10 -0.65 -2.36 16 25 C -0.04 -0.44 9.66 -39.72 -0.38 -0.82 16 26 C -0.11 -0.70 7.11 -26.52 -0.19 -0.89 16 27 C 0.05 0.32 8.01 38.06 0.30 0.63 16 28 O -0.31 -3.11 11.11 -20.19 -0.22 -3.34 16 29 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.29 6.95 -51.93 -0.36 0.92 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.07 1.37 7.62 -51.93 -0.40 0.98 16 37 H 0.35 4.71 6.24 -39.30 -0.25 4.46 16 38 H 0.41 2.66 9.10 45.56 0.41 3.07 16 39 H 0.14 1.63 7.71 -52.49 -0.40 1.23 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.13 1.03 8.04 -52.49 -0.42 0.61 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -34.37 373.61 -8.96 -43.33 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.89 Total: 3.29 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.79 Total: -14.29 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.17 Total: -36.75 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.06 Total: -18.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.37 -8.96 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604129594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.304 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds