Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47252 * 2 1 4 4 C 1.53003 * 109.47326 * 120.00119 * 2 1 3 5 5 C 1.50701 * 109.46756 * 295.00151 * 4 2 1 6 6 H 1.08004 * 120.00350 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99608 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99549 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47291 * 90.00159 * 9 7 5 11 11 H 1.48499 * 109.46959 * 210.00161 * 9 7 5 12 12 H 1.48493 * 109.47491 * 330.00000 * 9 7 5 13 13 C 1.53003 * 109.47581 * 240.00405 * 2 1 3 14 14 N 1.46897 * 109.47183 * 64.99517 * 13 2 1 15 15 C 1.46899 * 110.99875 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46627 * 35.00812 * 15 14 13 17 17 C 1.50693 * 109.47740 * 275.00559 * 15 14 13 18 18 O 1.20821 * 119.99984 * 359.97438 * 17 15 14 19 19 O 1.34229 * 120.00317 * 180.02562 * 17 15 14 20 20 C 1.50701 * 109.47064 * 155.00021 * 15 14 13 21 21 C 1.38293 * 120.11105 * 39.98096 * 20 15 14 22 22 C 1.37934 * 120.34618 * 179.87264 * 21 20 15 23 23 C 1.39282 * 120.24319 * 359.96010 * 22 21 20 24 24 C 1.38884 * 118.87810 * 0.37225 * 23 22 21 25 25 C 1.37741 * 120.78134 * 359.48106 * 24 23 22 26 26 C 1.51638 * 107.04617 * 179.44718 * 24 23 22 27 27 C 1.54706 * 101.95770 * 344.59228 * 26 24 23 28 28 O 1.36143 * 129.88949 * 180.99829 * 23 22 21 29 29 H 1.09000 * 109.47038 * 59.99869 * 1 2 3 30 30 H 1.09006 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47644 * 299.99746 * 1 2 3 32 32 H 1.09003 * 109.47094 * 54.99847 * 4 2 1 33 33 H 1.08995 * 109.47486 * 175.00539 * 4 2 1 34 34 H 0.97001 * 119.99732 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46502 * 304.99855 * 13 2 1 36 36 H 1.08997 * 109.47220 * 184.99968 * 13 2 1 37 37 H 1.00893 * 111.00521 * 303.95997 * 14 13 2 38 38 H 0.96700 * 116.99847 * 179.97438 * 19 17 15 39 39 H 1.07991 * 119.82735 * 359.85789 * 21 20 15 40 40 H 1.08002 * 119.88046 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00875 * 180.31553 * 25 24 23 42 42 H 1.09002 * 110.93994 * 102.77103 * 26 24 23 43 43 H 1.08997 * 110.93769 * 226.42283 * 26 24 23 44 44 H 1.09003 * 110.74785 * 143.62371 * 27 26 24 45 45 H 1.08994 * 110.75591 * 266.97977 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0798 0.9742 2.3757 7 6 1.9923 -0.4023 3.7283 8 7 2.6755 -1.5193 3.8511 9 14 1.4975 0.5621 5.2497 10 1 0.1700 0.0936 5.7227 11 1 2.5064 0.3519 6.3188 12 1 1.4226 2.0073 4.9170 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1259 -0.6264 -3.6671 16 1 2.0826 -1.7073 -3.5334 17 6 3.5477 -0.2112 -3.9447 18 8 4.1081 0.5591 -3.2016 19 8 4.1912 -0.6963 -5.0182 20 6 1.2507 -0.2283 -4.8276 21 6 0.8082 1.0764 -4.9473 22 6 0.0091 1.4466 -6.0089 23 6 -0.3587 0.5086 -6.9706 24 6 0.0862 -0.8001 -6.8358 25 6 0.8865 -1.1669 -5.7765 26 6 -0.4761 -1.5835 -8.0060 27 6 -1.5766 -0.6310 -8.5303 28 8 -1.1141 0.6594 -8.0932 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7994 1.2057 34 1 2.9228 -1.8422 4.7317 35 1 1.6055 -1.7197 -1.2952 36 1 3.1264 -0.7993 -1.2056 37 1 0.6530 0.1794 -2.4754 38 1 5.1017 -0.4007 -5.1548 39 1 1.0896 1.8092 -4.2057 40 1 -0.3326 2.4675 -6.0948 41 1 1.2295 -2.1871 -5.6866 42 1 0.2877 -1.7516 -8.7653 43 1 -0.9053 -2.5282 -7.6721 44 1 -1.6369 -0.6720 -9.6179 45 1 -2.5402 -0.8689 -8.0798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604129594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = -126.441979 kcal Electronic energy + Delta-G solvation = -26424.791240 eV Core-core repulsion = 22599.244011 eV Total energy + Delta-G solvation = -3825.547229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14506 -41.30616 -39.11474 -38.06136 -36.99291 -35.64884 -34.10094 -33.60370 -31.56734 -30.15332 -28.95018 -27.90524 -26.60132 -24.67715 -24.11236 -23.22522 -22.83817 -21.46886 -20.67426 -19.11326 -18.55988 -18.34760 -17.90447 -17.45985 -17.24283 -16.94480 -16.55832 -16.30364 -15.76976 -15.57254 -15.11837 -14.89213 -14.54410 -14.27991 -14.13137 -14.11306 -14.03682 -13.83458 -13.50473 -13.30109 -13.21871 -12.82204 -12.72977 -12.63434 -12.58929 -12.39177 -12.23338 -11.95736 -11.91402 -11.77943 -11.52355 -11.42923 -11.06658 -10.95935 -10.52539 -9.88606 -9.54952 -9.11264 -8.16764 -6.25497 0.16845 0.32109 1.26113 1.40160 1.41645 1.52609 1.98867 2.30074 2.42660 2.62588 3.16659 3.17012 3.45975 3.54513 3.73463 3.94990 4.01695 4.19645 4.19994 4.21284 4.36205 4.37679 4.43712 4.48370 4.56789 4.68110 4.71949 4.84653 4.88824 4.92642 5.04733 5.06219 5.16646 5.24103 5.35545 5.36858 5.45374 5.50896 5.55914 5.57640 5.65581 5.77755 5.88382 5.92954 6.17354 6.30893 6.35731 6.90158 7.06830 7.42451 8.95440 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002573 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.587643 B =10877.871314 C =11583.656514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 H 0.051 0.949 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.079 3.921 14 N -0.670 5.670 15 C 0.150 3.850 16 H 0.105 0.895 17 C 0.483 3.517 18 O -0.529 6.529 19 O -0.510 6.510 20 C -0.127 4.127 21 C -0.066 4.066 22 C -0.148 4.148 23 C 0.098 3.902 24 C -0.181 4.181 25 C -0.045 4.045 26 C -0.105 4.105 27 C 0.044 3.956 28 O -0.325 6.325 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.045 0.955 32 H -0.005 1.005 33 H -0.019 1.019 34 H 0.262 0.738 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.363 0.637 38 H 0.425 0.575 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -1.498 -28.934 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.190 1.190 13 C -0.049 4.049 14 N -0.307 5.307 15 C 0.038 3.962 16 H 0.123 0.877 17 C 0.325 3.675 18 O -0.417 6.417 19 O -0.323 6.323 20 C -0.128 4.128 21 C -0.085 4.085 22 C -0.167 4.167 23 C 0.052 3.948 24 C -0.182 4.182 25 C -0.063 4.063 26 C -0.142 4.142 27 C -0.030 4.030 28 O -0.240 6.240 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.000 1.000 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.187 0.813 38 H 0.286 0.714 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.111 -0.904 -28.652 29.535 hybrid contribution 0.368 -0.240 1.177 1.256 sum -6.743 -1.143 -27.475 28.313 Atomic orbital electron populations 1.21652 0.94413 1.01055 1.01213 1.20973 0.96505 0.98811 0.92937 0.93023 1.18994 0.93984 0.94802 0.92634 1.21635 1.34368 1.08531 0.92038 0.92112 1.25954 0.95288 0.96137 1.02657 1.70100 1.40299 1.23002 1.24239 0.85504 0.78077 0.79214 0.78613 1.19598 1.21019 1.18978 1.21919 0.99403 0.94594 0.89024 1.59932 1.20714 1.50566 0.99451 1.19685 0.87220 0.99329 0.89920 0.87719 1.23596 0.89396 0.77142 0.77410 1.90745 1.68435 1.34145 1.48383 1.84462 1.34024 1.68636 1.45146 1.19195 1.01885 0.94717 0.96975 1.20859 0.95018 0.95878 0.96703 1.20386 1.02819 1.00077 0.93409 1.19851 0.92609 0.94869 0.87427 1.21022 1.02844 0.95297 0.99070 1.20298 0.94709 1.00023 0.91263 1.21885 0.98251 0.99558 0.94529 1.24188 0.97613 0.78506 1.02671 1.86832 1.65299 1.33602 1.38259 0.91416 0.93462 0.93544 0.98649 1.00028 0.92963 0.94118 0.93347 0.81276 0.71399 0.84607 0.84427 0.83438 0.87982 0.86986 0.85181 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.77 71.98 0.63 -3.87 16 2 C -0.07 -3.06 2.54 -10.79 -0.03 -3.09 16 3 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 4 C 0.03 1.79 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.39 8.41 25.60 0.22 -30.18 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 9 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.08 2.78 4.84 86.30 0.42 3.20 16 14 N -0.67 -19.11 5.23 -499.37 -2.61 -21.72 16 15 C 0.15 3.56 2.73 43.42 0.12 3.68 16 16 H 0.11 2.16 7.67 -2.39 -0.02 2.14 16 17 C 0.48 13.04 7.49 71.23 0.53 13.58 16 18 O -0.53 -18.97 16.68 21.98 0.37 -18.60 16 19 O -0.51 -9.93 13.34 -51.41 -0.69 -10.61 16 20 C -0.13 -2.61 4.64 -19.82 -0.09 -2.70 16 21 C -0.07 -1.42 8.99 22.21 0.20 -1.22 16 22 C -0.15 -3.02 10.06 22.45 0.23 -2.80 16 23 C 0.10 1.94 7.04 22.68 0.16 2.10 16 24 C -0.18 -3.02 6.27 -19.53 -0.12 -3.14 16 25 C -0.04 -0.76 9.66 22.18 0.21 -0.55 16 26 C -0.11 -1.01 7.11 30.73 0.22 -0.79 16 27 C 0.04 0.43 8.01 72.56 0.58 1.01 16 28 O -0.33 -6.05 11.11 -95.18 -1.06 -7.10 16 29 H 0.07 1.92 6.68 -2.39 -0.02 1.91 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 31 H 0.05 1.81 6.95 -2.39 -0.02 1.80 16 32 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 36 H 0.05 1.92 7.62 -2.39 -0.02 1.90 16 37 H 0.36 9.13 6.24 -89.70 -0.56 8.57 16 38 H 0.42 4.96 9.10 -74.06 -0.67 4.29 16 39 H 0.14 3.08 7.71 -2.92 -0.02 3.06 16 40 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.15 1.89 8.04 -2.91 -0.02 1.87 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.14 373.61 1.98 -74.16 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -0.22 Total: 16.90 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.87 Total: -22.57 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.32 Total: -79.46 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.38 Total: -36.32 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -76.14 1.98 -74.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604129594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.279 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds