Wall clock time and date at job start Tue Mar 31 2020 12:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35697 * 116.99979 * 2 1 4 4 C 1.38835 * 119.70905 * 359.97438 * 3 2 1 5 5 C 1.37661 * 119.96642 * 179.72333 * 4 3 2 6 6 C 1.39637 * 119.71933 * 0.65339 * 5 4 3 7 7 C 1.47472 * 119.91862 * 179.72742 * 6 5 4 8 8 O 1.21499 * 120.00174 * 179.72725 * 7 6 5 9 9 O 1.34746 * 119.99673 * 359.72990 * 7 6 5 10 10 C 1.40187 * 120.16466 * 359.45667 * 6 5 4 11 11 C 1.37318 * 119.78467 * 0.06436 * 10 6 5 12 12 C 1.50629 * 121.86387 * 180.54002 * 11 10 6 13 13 N 1.46625 * 110.51300 * 342.12582 * 12 11 10 14 14 C 1.46907 * 111.00056 * 175.99191 * 13 12 11 15 15 H 1.09005 * 109.46707 * 48.32148 * 14 13 12 16 16 C 1.52997 * 109.46966 * 288.32406 * 14 13 12 17 17 C 1.52995 * 109.47063 * 168.32272 * 14 13 12 18 18 C 1.50702 * 109.47032 * 294.87367 * 17 14 13 19 19 H 1.08001 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00059 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47243 * 60.00231 * 22 20 18 24 24 H 1.48497 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47085 * 299.99860 * 22 20 18 26 26 C 1.47161 * 110.22407 * 52.59152 * 13 12 11 27 27 C 1.50700 * 118.47322 * 179.78150 * 10 6 5 28 28 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47142 * 299.99799 * 1 2 3 30 30 H 1.08998 * 109.47227 * 59.99769 * 1 2 3 31 31 H 1.08000 * 120.01266 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.14180 * 180.40140 * 5 4 3 33 33 H 0.96701 * 116.99886 * 179.97438 * 9 7 6 34 34 H 1.09000 * 109.27403 * 102.39956 * 12 11 10 35 35 H 1.09004 * 109.26588 * 221.89725 * 12 11 10 36 36 H 1.08998 * 109.47436 * 59.99762 * 16 14 13 37 37 H 1.09008 * 109.47216 * 180.02562 * 16 14 13 38 38 H 1.09005 * 109.47197 * 299.99442 * 16 14 13 39 39 H 1.08993 * 109.47230 * 54.87329 * 17 14 13 40 40 H 1.08998 * 109.47104 * 174.88012 * 17 14 13 41 41 H 0.97004 * 120.00185 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.63598 * 48.64399 * 26 13 12 43 43 H 1.09005 * 109.63372 * 169.23889 * 26 13 12 44 44 H 1.09000 * 109.38390 * 283.38769 * 27 10 6 45 45 H 1.09001 * 109.38228 * 43.06459 * 27 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2830 2.3696 -0.0005 5 6 1.9024 3.5989 0.0052 6 6 3.2969 3.6715 -0.0023 7 6 3.9650 4.9862 -0.0022 8 8 5.1783 5.0511 -0.0037 9 8 3.2299 6.1155 -0.0005 10 6 4.0634 2.4977 -0.0041 11 6 3.4384 1.2750 0.0002 12 6 4.2157 -0.0152 0.0105 13 7 5.6021 0.2168 -0.4066 14 6 6.3945 -1.0164 -0.3095 15 1 5.8520 -1.8350 -0.7826 16 6 6.6391 -1.3507 1.1634 17 6 7.7364 -0.8174 -1.0170 18 6 7.5013 -0.6129 -2.4914 19 1 6.4954 -0.6233 -2.8845 20 6 8.5704 -0.4113 -3.3385 21 7 9.7952 -0.3982 -2.8598 22 14 8.2790 -0.1570 -5.1660 23 1 7.4289 1.0435 -5.3694 24 1 9.5814 0.0360 -5.8528 25 1 7.5951 -1.3490 -5.7288 26 6 6.2018 1.2937 0.3973 27 6 5.5653 2.6204 -0.0172 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2048 2.3078 -0.0005 32 1 1.3124 4.5035 0.0114 33 1 3.7125 6.9535 -0.0001 34 1 4.2080 -0.4318 1.0178 35 1 3.7480 -0.7223 -0.6746 36 1 5.6831 -1.4924 1.6674 37 1 7.2275 -2.2655 1.2355 38 1 7.1816 -0.5321 1.6365 39 1 8.2385 0.0575 -0.6043 40 1 8.3601 -1.6987 -0.8674 41 1 10.5474 -0.2567 -3.4558 42 1 6.0113 1.1108 1.4549 43 1 7.2762 1.3306 0.2168 44 1 5.8980 2.8832 -1.0214 45 1 5.8706 3.4014 0.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607214713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:04 Heat of formation + Delta-G solvation = -94.005673 kcal Electronic energy + Delta-G solvation = -27744.259185 eV Core-core repulsion = 23920.118500 eV Total energy + Delta-G solvation = -3824.140685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99598 -39.83276 -38.59317 -37.01174 -36.11241 -33.69131 -32.24772 -31.83297 -29.76519 -29.10769 -27.62124 -27.20925 -24.57376 -24.11450 -23.33649 -22.77755 -20.98065 -20.18809 -18.55618 -17.96179 -17.65569 -16.99438 -16.46681 -16.10011 -16.05427 -15.63784 -15.02569 -14.94219 -14.41796 -14.20150 -13.96811 -13.66316 -13.55302 -13.33214 -12.93910 -12.71522 -12.51314 -12.22426 -11.97423 -11.89467 -11.70796 -11.49849 -11.44260 -11.23766 -11.19719 -11.05029 -10.87532 -10.57620 -10.39554 -10.26155 -10.01843 -9.68025 -9.14226 -8.92750 -8.65927 -8.33884 -8.18664 -7.43874 -5.82191 -3.79354 0.72330 1.27458 2.54566 2.98427 3.08407 3.46017 3.49346 3.53733 3.66452 4.43449 4.58061 4.62485 4.72352 4.82316 4.91199 4.99763 5.11234 5.18729 5.24777 5.40375 5.54395 5.58987 5.74431 5.80532 5.82565 5.86348 5.95921 5.96973 6.06222 6.09278 6.12647 6.30124 6.34836 6.48218 6.51709 6.57582 6.63794 6.76350 6.81210 7.03897 7.17768 7.58887 7.70912 7.91617 7.93729 8.07847 8.18790 8.65054 9.25905 9.81934 11.29831 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004490 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.989829 B = 6234.482680 C = 7210.324216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.168 3.832 4 C -0.235 4.235 5 C -0.023 4.023 6 C -0.178 4.178 7 C 0.526 3.474 8 O -0.504 6.504 9 O -0.519 6.519 10 C 0.046 3.954 11 C -0.114 4.114 12 C 0.101 3.899 13 N -0.505 5.505 14 C 0.086 3.914 15 H 0.071 0.929 16 C -0.184 4.184 17 C 0.032 3.968 18 C -0.489 4.489 19 H 0.059 0.941 20 C 0.052 3.948 21 N -0.904 5.904 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.049 3.951 27 C -0.084 4.084 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.411 0.589 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.257 0.743 42 H 0.027 0.973 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.659 7.145 9.715 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.122 3.878 4 C -0.254 4.254 5 C -0.041 4.041 6 C -0.180 4.180 7 C 0.372 3.628 8 O -0.394 6.394 9 O -0.332 6.332 10 C 0.045 3.955 11 C -0.115 4.115 12 C -0.027 4.027 13 N -0.228 5.228 14 C -0.022 4.022 15 H 0.089 0.911 16 C -0.243 4.243 17 C -0.005 4.005 18 C -0.527 4.527 19 H 0.077 0.923 20 C -0.148 4.148 21 N -0.545 5.545 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.079 4.079 27 C -0.121 4.121 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.269 0.731 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.282 6.740 9.145 22.379 hybrid contribution -0.215 0.664 -0.285 0.754 sum -19.497 7.404 8.860 22.659 Atomic orbital electron populations 1.23120 0.78216 1.04185 1.01451 1.86082 1.21488 1.26805 1.87458 1.19257 0.91625 0.84307 0.92656 1.21037 1.00104 0.91902 1.12340 1.21065 0.92956 0.97642 0.92436 1.18831 0.93521 0.89706 1.15910 1.20802 0.85069 0.84532 0.72427 1.90898 1.14947 1.87442 1.46097 1.84545 1.44863 1.17373 1.86388 1.19627 0.96940 0.89493 0.89446 1.18963 0.89883 0.95723 1.06948 1.20760 0.90157 0.92555 0.99210 1.62498 0.99766 1.07586 1.52976 1.21950 0.97687 0.89968 0.92587 0.91122 1.22535 1.00294 1.01902 0.99572 1.19183 0.89087 0.97047 0.95232 1.21124 0.92732 1.46727 0.92136 0.92266 1.24979 0.95296 0.96168 0.98326 1.69949 0.98053 1.51597 1.34912 0.86721 0.76944 0.78608 0.86050 1.20412 1.21688 1.20558 1.22259 1.01005 0.90716 0.93897 1.21025 0.88173 0.98150 1.04722 0.88040 0.92516 0.92383 0.84798 0.84481 0.73094 0.94051 0.89504 0.94157 0.92427 0.92766 0.96176 0.96267 0.93325 0.95487 0.88736 0.88342 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.80 101.05 0.99 1.17 16 2 O -0.31 -3.71 9.57 -18.79 -0.18 -3.89 16 3 C 0.17 2.25 6.67 -38.89 -0.26 1.99 16 4 C -0.24 -2.58 9.00 -39.57 -0.36 -2.94 16 5 C -0.02 -0.26 9.60 -39.27 -0.38 -0.64 16 6 C -0.18 -2.51 5.88 -104.88 -0.62 -3.13 16 7 C 0.53 7.14 8.22 34.49 0.28 7.43 16 8 O -0.50 -8.20 13.90 -19.26 -0.27 -8.47 16 9 O -0.52 -5.05 12.65 -40.62 -0.51 -5.56 16 10 C 0.05 0.74 5.80 -104.23 -0.60 0.13 16 11 C -0.11 -1.81 5.80 -104.52 -0.61 -2.41 16 12 C 0.10 1.71 4.68 -5.16 -0.02 1.69 16 13 N -0.51 -9.96 4.34 -228.20 -0.99 -10.95 16 14 C 0.09 1.77 2.24 -67.71 -0.15 1.62 16 15 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 16 C -0.18 -3.20 8.43 37.16 0.31 -2.88 16 17 C 0.03 0.81 4.43 -27.88 -0.12 0.68 16 18 C -0.49 -13.89 8.84 -34.44 -0.30 -14.19 16 19 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 20 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 21 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 22 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 26 C 0.05 0.91 4.24 -3.74 -0.02 0.89 16 27 C -0.08 -1.48 4.49 -27.94 -0.13 -1.61 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.33 7.64 -51.93 -0.40 -0.06 16 30 H 0.06 0.37 7.64 -51.93 -0.40 -0.03 16 31 H 0.13 1.05 6.25 -52.49 -0.33 0.72 16 32 H 0.14 1.24 7.59 -52.49 -0.40 0.84 16 33 H 0.41 2.18 9.11 45.56 0.42 2.60 16 34 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 35 H 0.09 1.49 7.79 -51.93 -0.40 1.09 16 36 H 0.04 0.62 6.67 -51.93 -0.35 0.28 16 37 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.05 0.93 6.64 -51.93 -0.34 0.59 16 39 H 0.02 0.54 6.25 -51.93 -0.32 0.22 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.03 0.46 7.08 -51.93 -0.37 0.09 16 43 H 0.09 1.94 6.08 -51.93 -0.32 1.63 16 44 H 0.10 1.96 8.08 -51.93 -0.42 1.54 16 45 H 0.10 1.72 5.96 -51.93 -0.31 1.41 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -33.79 356.03 -8.45 -42.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.50 Total: 1.35 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.08 Total: -10.79 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.25 Total: -37.81 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.96 Total: -17.92 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.79 -8.45 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607214713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.763 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds