Wall clock time and date at job start Tue Mar 31 2020 12:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35697 * 116.99979 * 2 1 4 4 C 1.38835 * 119.70905 * 359.97438 * 3 2 1 5 5 C 1.37661 * 119.96642 * 179.72333 * 4 3 2 6 6 C 1.39637 * 119.71933 * 0.65339 * 5 4 3 7 7 C 1.47472 * 119.91862 * 179.72742 * 6 5 4 8 8 O 1.21499 * 120.00174 * 179.72725 * 7 6 5 9 9 O 1.34746 * 119.99673 * 359.72990 * 7 6 5 10 10 C 1.40187 * 120.16466 * 359.45667 * 6 5 4 11 11 C 1.37318 * 119.78467 * 0.06436 * 10 6 5 12 12 C 1.50629 * 121.86387 * 180.54002 * 11 10 6 13 13 N 1.46625 * 110.51300 * 342.12582 * 12 11 10 14 14 C 1.46907 * 111.00056 * 175.99191 * 13 12 11 15 15 H 1.09005 * 109.46707 * 48.32148 * 14 13 12 16 16 C 1.52997 * 109.46966 * 288.32406 * 14 13 12 17 17 C 1.52995 * 109.47063 * 168.32272 * 14 13 12 18 18 C 1.50702 * 109.47032 * 294.87367 * 17 14 13 19 19 H 1.08001 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00059 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99850 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47243 * 60.00231 * 22 20 18 24 24 H 1.48497 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47085 * 299.99860 * 22 20 18 26 26 C 1.47161 * 110.22407 * 52.59152 * 13 12 11 27 27 C 1.50700 * 118.47322 * 179.78150 * 10 6 5 28 28 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47142 * 299.99799 * 1 2 3 30 30 H 1.08998 * 109.47227 * 59.99769 * 1 2 3 31 31 H 1.08000 * 120.01266 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.14180 * 180.40140 * 5 4 3 33 33 H 0.96701 * 116.99886 * 179.97438 * 9 7 6 34 34 H 1.09000 * 109.27403 * 102.39956 * 12 11 10 35 35 H 1.09004 * 109.26588 * 221.89725 * 12 11 10 36 36 H 1.08998 * 109.47436 * 59.99762 * 16 14 13 37 37 H 1.09008 * 109.47216 * 180.02562 * 16 14 13 38 38 H 1.09005 * 109.47197 * 299.99442 * 16 14 13 39 39 H 1.08993 * 109.47230 * 54.87329 * 17 14 13 40 40 H 1.08998 * 109.47104 * 174.88012 * 17 14 13 41 41 H 0.97004 * 120.00185 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.63598 * 48.64399 * 26 13 12 43 43 H 1.09005 * 109.63372 * 169.23889 * 26 13 12 44 44 H 1.09000 * 109.38390 * 283.38769 * 27 10 6 45 45 H 1.09001 * 109.38228 * 43.06459 * 27 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2830 2.3696 -0.0005 5 6 1.9024 3.5989 0.0052 6 6 3.2969 3.6715 -0.0023 7 6 3.9650 4.9862 -0.0022 8 8 5.1783 5.0511 -0.0037 9 8 3.2299 6.1155 -0.0005 10 6 4.0634 2.4977 -0.0041 11 6 3.4384 1.2750 0.0002 12 6 4.2157 -0.0152 0.0105 13 7 5.6021 0.2168 -0.4066 14 6 6.3945 -1.0164 -0.3095 15 1 5.8520 -1.8350 -0.7826 16 6 6.6391 -1.3507 1.1634 17 6 7.7364 -0.8174 -1.0170 18 6 7.5013 -0.6129 -2.4914 19 1 6.4954 -0.6233 -2.8845 20 6 8.5704 -0.4113 -3.3385 21 7 9.7952 -0.3982 -2.8598 22 14 8.2790 -0.1570 -5.1660 23 1 7.4289 1.0435 -5.3694 24 1 9.5814 0.0360 -5.8528 25 1 7.5951 -1.3490 -5.7288 26 6 6.2018 1.2937 0.3973 27 6 5.5653 2.6204 -0.0172 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2048 2.3078 -0.0005 32 1 1.3124 4.5035 0.0114 33 1 3.7125 6.9535 -0.0001 34 1 4.2080 -0.4318 1.0178 35 1 3.7480 -0.7223 -0.6746 36 1 5.6831 -1.4924 1.6674 37 1 7.2275 -2.2655 1.2355 38 1 7.1816 -0.5321 1.6365 39 1 8.2385 0.0575 -0.6043 40 1 8.3601 -1.6987 -0.8674 41 1 10.5474 -0.2567 -3.4558 42 1 6.0113 1.1108 1.4549 43 1 7.2762 1.3306 0.2168 44 1 5.8980 2.8832 -1.0214 45 1 5.8706 3.4014 0.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607214713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:03 Heat of formation + Delta-G solvation = -117.184276 kcal Electronic energy + Delta-G solvation = -27745.264284 eV Core-core repulsion = 23920.118500 eV Total energy + Delta-G solvation = -3825.145785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04420 -40.80324 -39.85380 -38.14588 -37.07323 -35.38379 -34.05488 -33.02928 -31.14755 -30.36488 -29.08148 -28.30453 -25.97629 -25.19548 -24.70388 -24.57897 -21.96090 -21.57348 -19.94433 -18.94065 -18.67722 -18.34114 -17.96752 -17.55785 -16.99372 -16.60960 -16.53758 -16.30119 -16.04009 -15.65477 -15.01604 -14.79232 -14.67616 -14.55138 -14.39752 -14.06859 -13.62570 -13.58438 -13.48001 -13.15544 -13.06245 -13.03800 -12.72901 -12.61970 -12.53650 -12.43461 -12.37102 -12.12677 -11.92000 -11.85793 -11.56707 -11.11046 -11.01110 -10.98671 -10.45837 -9.76025 -9.35559 -8.91168 -8.08818 -6.12801 -0.28580 0.25783 1.39693 1.43197 1.50297 1.53186 2.11083 2.27224 2.47518 2.64790 3.04348 3.27234 3.60228 3.64923 3.93292 4.04652 4.12517 4.17182 4.28527 4.30696 4.39858 4.43442 4.46187 4.50012 4.54823 4.62910 4.68330 4.78368 4.79414 4.87956 4.96603 5.05061 5.08039 5.15912 5.20002 5.21607 5.29076 5.45228 5.52042 5.56480 5.68753 5.72473 5.90719 6.28852 6.34570 6.37977 6.53083 6.99979 7.04035 7.52243 9.03079 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004490 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.989829 B = 6234.482680 C = 7210.324216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.172 3.828 4 C -0.222 4.222 5 C -0.007 4.007 6 C -0.194 4.194 7 C 0.530 3.470 8 O -0.543 6.543 9 O -0.503 6.503 10 C 0.023 3.977 11 C -0.141 4.141 12 C 0.109 3.891 13 N -0.528 5.528 14 C 0.094 3.906 15 H 0.067 0.933 16 C -0.173 4.173 17 C 0.038 3.962 18 C -0.498 4.498 19 H 0.054 0.946 20 C -0.003 4.003 21 N -0.939 5.939 22 Si 0.953 3.047 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.057 3.943 27 C -0.072 4.072 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.431 0.569 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.051 0.949 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.258 0.742 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.662 7.839 9.930 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.124 3.876 4 C -0.240 4.240 5 C -0.025 4.025 6 C -0.196 4.196 7 C 0.377 3.623 8 O -0.436 6.436 9 O -0.317 6.317 10 C 0.022 3.978 11 C -0.142 4.142 12 C -0.018 4.018 13 N -0.251 5.251 14 C -0.014 4.014 15 H 0.086 0.914 16 C -0.232 4.232 17 C 0.001 3.999 18 C -0.537 4.537 19 H 0.072 0.928 20 C -0.199 4.199 21 N -0.581 5.581 22 Si 0.779 3.221 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.192 1.192 26 C -0.071 4.071 27 C -0.109 4.109 28 H 0.136 0.864 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.192 0.808 32 H 0.187 0.813 33 H 0.293 0.707 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.325 7.448 9.366 26.215 hybrid contribution 0.887 0.475 -0.331 1.059 sum -22.438 7.923 9.034 25.453 Atomic orbital electron populations 1.23499 0.75560 1.05985 1.03021 1.86067 1.24215 1.26395 1.87017 1.19281 0.90818 0.85704 0.91776 1.21451 1.01892 0.90581 1.10055 1.21427 0.91716 0.99205 0.90194 1.18955 0.94813 0.89156 1.16667 1.20807 0.84572 0.85370 0.71528 1.90887 1.16606 1.88040 1.48036 1.84479 1.44228 1.17520 1.85474 1.19481 0.95707 0.90891 0.91699 1.18920 0.91381 0.94724 1.09167 1.20662 0.88191 0.93632 0.99323 1.62348 1.01307 1.07175 1.54301 1.21648 0.95086 0.90517 0.94158 0.91436 1.22388 1.01681 1.01899 0.97215 1.19032 0.91509 0.94767 0.94617 1.21434 0.92437 1.46112 0.93705 0.92764 1.25803 0.95078 0.96049 1.02977 1.70078 0.98850 1.52690 1.36462 0.85690 0.77020 0.78752 0.80670 1.20316 1.21085 1.19239 1.22124 0.99084 0.91215 0.94682 1.20767 0.90240 0.97263 1.02629 0.86410 0.90516 0.91049 0.80805 0.81283 0.70715 0.93163 0.90148 0.91613 0.92008 0.93028 0.98564 0.98578 0.93300 0.93835 0.91941 0.91908 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.80 113.37 1.11 1.25 16 2 O -0.32 -6.94 9.57 -90.17 -0.86 -7.81 16 3 C 0.17 4.13 6.67 22.72 0.15 4.29 16 4 C -0.22 -3.91 9.00 22.28 0.20 -3.71 16 5 C -0.01 -0.14 9.60 22.47 0.22 0.07 16 6 C -0.19 -5.21 5.88 -20.03 -0.12 -5.32 16 7 C 0.53 13.92 8.22 70.26 0.58 14.49 16 8 O -0.54 -18.10 13.90 19.84 0.28 -17.82 16 9 O -0.50 -8.47 12.65 -56.56 -0.72 -9.18 16 10 C 0.02 0.75 5.80 -19.61 -0.11 0.63 16 11 C -0.14 -4.36 5.80 -19.80 -0.11 -4.48 16 12 C 0.11 3.70 4.68 85.59 0.40 4.10 16 13 N -0.53 -21.55 4.34 -875.90 -3.80 -25.36 16 14 C 0.09 4.00 2.24 44.91 0.10 4.11 16 15 H 0.07 2.89 8.06 -2.38 -0.02 2.87 16 16 C -0.17 -6.03 8.43 71.98 0.61 -5.43 16 17 C 0.04 2.05 4.43 29.85 0.13 2.18 16 18 C -0.50 -29.43 8.84 25.60 0.23 -29.20 16 19 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 20 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 21 N -0.94 -59.27 13.29 21.45 0.28 -58.99 16 22 Si 0.95 47.31 29.54 68.60 2.03 49.34 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.06 2.23 4.24 86.21 0.37 2.59 16 27 C -0.07 -2.70 4.49 29.81 0.13 -2.57 16 28 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.52 7.64 -2.39 -0.02 0.50 16 30 H 0.07 0.58 7.64 -2.39 -0.02 0.56 16 31 H 0.17 1.65 6.25 -2.91 -0.02 1.63 16 32 H 0.17 2.14 7.59 -2.91 -0.02 2.12 16 33 H 0.43 3.53 9.11 -74.06 -0.67 2.85 16 34 H 0.05 1.57 6.52 -2.39 -0.02 1.56 16 35 H 0.08 2.76 7.79 -2.39 -0.02 2.74 16 36 H 0.06 1.96 6.67 -2.39 -0.02 1.94 16 37 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 1.81 6.64 -2.38 -0.02 1.79 16 39 H 0.00 -0.23 6.25 -2.39 -0.01 -0.24 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.26 15.51 8.31 -92.71 -0.77 14.73 16 42 H 0.04 1.53 7.08 -2.38 -0.02 1.51 16 43 H 0.06 2.80 6.08 -2.38 -0.01 2.78 16 44 H 0.06 2.73 8.08 -2.39 -0.02 2.71 16 45 H 0.10 3.69 5.96 -2.39 -0.01 3.68 16 Total: -1.00 -76.91 356.03 1.90 -75.01 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.35 Total: 11.54 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.34 Total: -16.73 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.52 Total: -84.34 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.30 Total: -34.82 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -76.91 1.90 -75.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607214713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.170 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds