Wall clock time and date at job start Tue Mar 31 2020 12:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35695 * 117.00165 * 2 1 4 4 C 1.38821 * 119.71107 * 359.97438 * 3 2 1 5 5 C 1.37663 * 119.97493 * 179.97438 * 4 3 2 6 6 C 1.39629 * 119.71570 * 0.08634 * 5 4 3 7 7 C 1.47464 * 119.91918 * 180.02562 * 6 5 4 8 8 O 1.21511 * 120.00295 * 179.97438 * 7 6 5 9 9 O 1.34744 * 120.00111 * 359.97438 * 7 6 5 10 10 C 1.40192 * 120.16209 * 0.02653 * 6 5 4 11 11 C 1.37309 * 119.79022 * 359.82456 * 10 6 5 12 12 C 1.50635 * 121.86667 * 180.26571 * 11 10 6 13 13 N 1.46627 * 110.50286 * 342.41279 * 12 11 10 14 14 C 1.46901 * 110.99690 * 289.06798 * 13 12 11 15 15 H 1.09003 * 109.47479 * 49.75001 * 14 13 12 16 16 C 1.53003 * 109.46877 * 169.74957 * 14 13 12 17 17 C 1.52999 * 109.47040 * 289.74889 * 14 13 12 18 18 C 1.50700 * 109.47398 * 74.67440 * 17 14 13 19 19 H 1.08000 * 119.99732 * 5.94674 * 18 17 14 20 20 C 1.37874 * 120.00131 * 185.94435 * 18 17 14 21 21 N 1.31510 * 120.00220 * 180.02562 * 20 18 17 22 22 Si 1.86809 * 120.00127 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46692 * 89.99940 * 22 20 18 24 24 H 1.48492 * 109.46927 * 209.99804 * 22 20 18 25 25 H 1.48498 * 109.46998 * 329.99922 * 22 20 18 26 26 C 1.47091 * 110.27323 * 52.49824 * 13 12 11 27 27 C 1.50705 * 118.46014 * 179.55471 * 10 6 5 28 28 H 1.09004 * 109.47050 * 59.99687 * 1 2 3 29 29 H 1.08997 * 109.47711 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47482 * 300.00178 * 1 2 3 31 31 H 1.08005 * 120.01470 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.13783 * 180.02562 * 5 4 3 33 33 H 0.96698 * 117.00499 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.27076 * 102.66527 * 12 11 10 35 35 H 1.09008 * 109.26541 * 222.16358 * 12 11 10 36 36 H 1.08993 * 109.47091 * 63.48064 * 16 14 13 37 37 H 1.09004 * 109.46838 * 183.48272 * 16 14 13 38 38 H 1.08996 * 109.47146 * 303.47819 * 16 14 13 39 39 H 1.09004 * 109.46912 * 194.67665 * 17 14 13 40 40 H 1.08996 * 109.47198 * 314.67138 * 17 14 13 41 41 H 0.96998 * 120.00842 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.65480 * 169.19579 * 26 13 12 43 43 H 1.09006 * 109.63347 * 48.57552 * 26 13 12 44 44 H 1.09005 * 109.38884 * 283.48825 * 27 10 6 45 45 H 1.09000 * 109.38634 * 43.17976 * 27 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2831 2.3695 -0.0005 5 6 1.9025 3.5989 0.0000 6 6 3.2969 3.6714 -0.0008 7 6 3.9650 4.9861 0.0004 8 8 5.1784 5.0510 0.0002 9 8 3.2300 6.1154 0.0016 10 6 4.0633 2.4976 -0.0026 11 6 3.4385 1.2749 0.0000 12 6 4.2157 -0.0154 0.0041 13 7 5.6026 0.2191 -0.4102 14 6 5.6778 0.5345 -1.8429 15 1 4.9566 1.3164 -2.0813 16 6 7.0879 1.0199 -2.1849 17 6 5.3583 -0.7198 -2.6587 18 6 3.8768 -0.9904 -2.6048 19 1 3.2157 -0.2828 -2.1265 20 6 3.3653 -2.1412 -3.1660 21 7 2.0723 -2.3771 -3.1193 22 14 4.5088 -3.3654 -3.9926 23 1 4.9776 -4.3579 -2.9925 24 1 3.7809 -4.0655 -5.0812 25 1 5.6768 -2.6458 -4.5611 26 6 6.2013 1.2925 0.3980 27 6 5.5653 2.6205 -0.0137 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2048 2.3078 -0.0014 32 1 1.3123 4.5034 0.0000 33 1 3.7126 6.9533 0.0019 34 1 4.2071 -0.4374 1.0091 35 1 3.7486 -0.7189 -0.6853 36 1 7.8022 0.2167 -2.0049 37 1 7.1269 1.3125 -3.2342 38 1 7.3390 1.8765 -1.5593 39 1 5.6623 -0.5668 -3.6943 40 1 5.8984 -1.5706 -2.2435 41 1 1.7124 -3.1868 -3.5138 42 1 7.2758 1.3300 0.2193 43 1 6.0089 1.1062 1.4546 44 1 5.8993 2.8860 -1.0167 45 1 5.8697 3.3995 0.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607214714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:07 Heat of formation + Delta-G solvation = -81.218449 kcal Electronic energy + Delta-G solvation = -28832.567674 eV Core-core repulsion = 25008.981484 eV Total energy + Delta-G solvation = -3823.586189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93415 -39.65899 -38.59805 -36.59755 -36.01994 -33.42231 -32.13095 -31.65298 -30.06981 -29.16322 -27.62169 -27.01554 -24.24671 -23.99577 -23.11947 -22.13574 -20.83328 -20.51157 -18.37022 -17.75103 -17.41959 -16.93186 -16.61746 -16.13151 -15.69037 -15.32987 -15.13338 -14.87640 -14.24186 -14.04970 -13.76061 -13.60914 -13.25870 -13.00973 -12.69674 -12.56238 -12.32773 -11.98472 -11.78301 -11.66980 -11.57871 -11.50294 -11.37154 -11.25609 -10.93546 -10.81379 -10.72864 -10.56853 -10.54337 -10.06459 -9.95930 -9.76484 -9.26182 -8.89815 -8.50018 -8.35886 -7.84252 -7.50960 -5.99294 -3.92875 0.98021 1.55314 2.72258 3.13208 3.36401 3.43472 3.48845 3.60230 3.93636 4.51221 4.66381 4.88428 4.91522 5.13997 5.33077 5.33664 5.33887 5.48836 5.49993 5.57543 5.64893 5.78781 5.82887 5.87036 5.90465 6.01515 6.08589 6.20542 6.23121 6.27291 6.34760 6.43111 6.47559 6.51846 6.58430 6.74513 6.77139 6.89110 6.92010 7.29782 7.37837 7.41473 7.69096 7.80492 7.96167 7.99026 8.06170 8.58815 9.03845 9.63319 11.11643 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.005742 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.482222 B = 4875.107541 C = 6277.822365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.281 6.281 3 C 0.188 3.812 4 C -0.238 4.238 5 C -0.026 4.026 6 C -0.187 4.187 7 C 0.530 3.470 8 O -0.517 6.517 9 O -0.518 6.518 10 C 0.022 3.978 11 C -0.135 4.135 12 C 0.063 3.937 13 N -0.512 5.512 14 C 0.090 3.910 15 H 0.039 0.961 16 C -0.154 4.154 17 C -0.008 4.008 18 C -0.518 4.518 19 H 0.086 0.914 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.268 1.268 26 C 0.042 3.958 27 C -0.123 4.123 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.408 0.592 34 H 0.068 0.932 35 H 0.167 0.833 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 11.662 8.189 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.140 3.860 4 C -0.257 4.257 5 C -0.044 4.044 6 C -0.188 4.188 7 C 0.377 3.623 8 O -0.408 6.408 9 O -0.330 6.330 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.064 4.064 13 N -0.234 5.234 14 C -0.018 4.018 15 H 0.057 0.943 16 C -0.212 4.212 17 C -0.046 4.046 18 C -0.555 4.555 19 H 0.104 0.896 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.192 1.192 26 C -0.087 4.087 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.266 0.734 34 H 0.087 0.913 35 H 0.183 0.817 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.323 10.495 8.199 13.322 hybrid contribution -0.145 0.924 -0.684 1.158 sum -0.467 11.419 7.516 13.679 Atomic orbital electron populations 1.23060 0.78442 1.04353 1.00481 1.86252 1.21215 1.25644 1.86017 1.19356 0.91929 0.84650 0.90100 1.21119 1.00262 0.92094 1.12186 1.20989 0.92870 0.97529 0.93005 1.18704 0.93585 0.89279 1.17279 1.20900 0.84969 0.84550 0.71904 1.90833 1.15133 1.87585 1.47251 1.84580 1.44807 1.17281 1.86331 1.19393 0.96032 0.89986 0.92472 1.19850 0.91173 0.97192 1.05489 1.22044 0.86980 0.93866 1.03515 1.62604 1.16841 1.39909 1.04010 1.21629 0.94591 0.98462 0.87138 0.94294 1.22108 0.97871 1.00563 1.00622 1.19651 0.97714 0.93131 0.94096 1.21247 0.91158 1.06570 1.36517 0.89595 1.24970 0.94737 0.97814 0.95466 1.69911 1.11615 1.26432 1.45489 0.86841 0.81502 0.81789 0.79495 1.20308 1.21851 1.19234 1.22376 0.99381 0.88998 0.97917 1.21542 0.89982 1.00273 1.04296 0.92480 0.87917 0.93371 0.84925 0.84875 0.73420 0.91343 0.81655 0.92441 0.92935 0.92980 0.96581 0.95681 0.93030 0.90317 0.91396 0.89331 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.80 101.05 0.99 1.44 16 2 O -0.28 -5.31 9.58 -18.79 -0.18 -5.49 16 3 C 0.19 3.43 6.53 -38.90 -0.25 3.17 16 4 C -0.24 -3.62 9.00 -39.58 -0.36 -3.97 16 5 C -0.03 -0.37 9.60 -39.27 -0.38 -0.75 16 6 C -0.19 -3.01 5.88 -104.89 -0.62 -3.63 16 7 C 0.53 7.75 8.22 34.49 0.28 8.04 16 8 O -0.52 -8.44 13.90 -19.27 -0.27 -8.70 16 9 O -0.52 -5.65 12.65 -40.61 -0.51 -6.16 16 10 C 0.02 0.39 5.10 -104.22 -0.53 -0.14 16 11 C -0.13 -2.56 4.65 -104.52 -0.49 -3.05 16 12 C 0.06 1.28 4.65 -5.16 -0.02 1.26 16 13 N -0.51 -9.97 4.88 -228.25 -1.11 -11.08 16 14 C 0.09 1.84 1.57 -67.71 -0.11 1.74 16 15 H 0.04 0.87 5.95 -51.93 -0.31 0.56 16 16 C -0.15 -2.67 8.23 37.16 0.31 -2.36 16 17 C -0.01 -0.20 3.66 -27.88 -0.10 -0.30 16 18 C -0.52 -13.91 7.18 -34.44 -0.25 -14.16 16 19 H 0.09 2.45 5.75 -52.49 -0.30 2.14 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -25.97 13.96 55.43 0.77 -25.19 16 22 Si 0.88 21.52 27.36 -169.99 -4.65 16.87 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.27 -6.44 6.72 56.52 0.38 -6.06 16 26 C 0.04 0.68 5.39 -3.77 -0.02 0.66 16 27 C -0.12 -2.05 3.49 -27.94 -0.10 -2.14 16 28 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 29 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.05 0.53 7.64 -51.93 -0.40 0.13 16 31 H 0.13 1.65 6.25 -52.48 -0.33 1.32 16 32 H 0.13 1.58 7.59 -52.49 -0.40 1.18 16 33 H 0.41 2.48 9.11 45.56 0.42 2.90 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.17 4.02 3.58 -51.92 -0.19 3.83 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.81 4.91 -51.93 -0.26 0.56 16 39 H 0.02 0.39 7.53 -51.93 -0.39 0.00 16 40 H 0.02 0.61 7.24 -51.93 -0.38 0.23 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.08 1.18 6.64 -51.93 -0.34 0.83 16 43 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 44 H 0.09 1.56 5.61 -51.93 -0.29 1.27 16 45 H 0.10 1.61 5.97 -51.93 -0.31 1.30 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -31.48 342.01 -7.67 -39.15 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.13 Total: 7.77 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.74 Total: -12.30 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.34 Total: -36.28 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.96 Total: -20.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.65 Total: 16.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.48 -7.67 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607214714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.071 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds