Wall clock time and date at job start Tue Mar 31 2020 12:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35695 * 117.00165 * 2 1 4 4 C 1.38821 * 119.71107 * 359.97438 * 3 2 1 5 5 C 1.37663 * 119.97493 * 179.97438 * 4 3 2 6 6 C 1.39629 * 119.71570 * 0.08634 * 5 4 3 7 7 C 1.47464 * 119.91918 * 180.02562 * 6 5 4 8 8 O 1.21511 * 120.00295 * 179.97438 * 7 6 5 9 9 O 1.34744 * 120.00111 * 359.97438 * 7 6 5 10 10 C 1.40192 * 120.16209 * 0.02653 * 6 5 4 11 11 C 1.37309 * 119.79022 * 359.82456 * 10 6 5 12 12 C 1.50635 * 121.86667 * 180.26571 * 11 10 6 13 13 N 1.46627 * 110.50286 * 342.41279 * 12 11 10 14 14 C 1.46901 * 110.99690 * 289.06798 * 13 12 11 15 15 H 1.09003 * 109.47479 * 49.75001 * 14 13 12 16 16 C 1.53003 * 109.46877 * 169.74957 * 14 13 12 17 17 C 1.52999 * 109.47040 * 289.74889 * 14 13 12 18 18 C 1.50700 * 109.47398 * 74.67440 * 17 14 13 19 19 H 1.08000 * 119.99732 * 5.94674 * 18 17 14 20 20 C 1.37874 * 120.00131 * 185.94435 * 18 17 14 21 21 N 1.31510 * 120.00220 * 180.02562 * 20 18 17 22 22 Si 1.86809 * 120.00127 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46692 * 89.99940 * 22 20 18 24 24 H 1.48492 * 109.46927 * 209.99804 * 22 20 18 25 25 H 1.48498 * 109.46998 * 329.99922 * 22 20 18 26 26 C 1.47091 * 110.27323 * 52.49824 * 13 12 11 27 27 C 1.50705 * 118.46014 * 179.55471 * 10 6 5 28 28 H 1.09004 * 109.47050 * 59.99687 * 1 2 3 29 29 H 1.08997 * 109.47711 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47482 * 300.00178 * 1 2 3 31 31 H 1.08005 * 120.01470 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.13783 * 180.02562 * 5 4 3 33 33 H 0.96698 * 117.00499 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.27076 * 102.66527 * 12 11 10 35 35 H 1.09008 * 109.26541 * 222.16358 * 12 11 10 36 36 H 1.08993 * 109.47091 * 63.48064 * 16 14 13 37 37 H 1.09004 * 109.46838 * 183.48272 * 16 14 13 38 38 H 1.08996 * 109.47146 * 303.47819 * 16 14 13 39 39 H 1.09004 * 109.46912 * 194.67665 * 17 14 13 40 40 H 1.08996 * 109.47198 * 314.67138 * 17 14 13 41 41 H 0.96998 * 120.00842 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.65480 * 169.19579 * 26 13 12 43 43 H 1.09006 * 109.63347 * 48.57552 * 26 13 12 44 44 H 1.09005 * 109.38884 * 283.48825 * 27 10 6 45 45 H 1.09000 * 109.38634 * 43.17976 * 27 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2831 2.3695 -0.0005 5 6 1.9025 3.5989 0.0000 6 6 3.2969 3.6714 -0.0008 7 6 3.9650 4.9861 0.0004 8 8 5.1784 5.0510 0.0002 9 8 3.2300 6.1154 0.0016 10 6 4.0633 2.4976 -0.0026 11 6 3.4385 1.2749 0.0000 12 6 4.2157 -0.0154 0.0041 13 7 5.6026 0.2191 -0.4102 14 6 5.6778 0.5345 -1.8429 15 1 4.9566 1.3164 -2.0813 16 6 7.0879 1.0199 -2.1849 17 6 5.3583 -0.7198 -2.6587 18 6 3.8768 -0.9904 -2.6048 19 1 3.2157 -0.2828 -2.1265 20 6 3.3653 -2.1412 -3.1660 21 7 2.0723 -2.3771 -3.1193 22 14 4.5088 -3.3654 -3.9926 23 1 4.9776 -4.3579 -2.9925 24 1 3.7809 -4.0655 -5.0812 25 1 5.6768 -2.6458 -4.5611 26 6 6.2013 1.2925 0.3980 27 6 5.5653 2.6205 -0.0137 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2048 2.3078 -0.0014 32 1 1.3123 4.5034 0.0000 33 1 3.7126 6.9533 0.0019 34 1 4.2071 -0.4374 1.0091 35 1 3.7486 -0.7189 -0.6853 36 1 7.8022 0.2167 -2.0049 37 1 7.1269 1.3125 -3.2342 38 1 7.3390 1.8765 -1.5593 39 1 5.6623 -0.5668 -3.6943 40 1 5.8984 -1.5706 -2.2435 41 1 1.7124 -3.1868 -3.5138 42 1 7.2758 1.3300 0.2193 43 1 6.0089 1.1062 1.4546 44 1 5.8993 2.8860 -1.0167 45 1 5.8697 3.3995 0.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607214714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:06 Heat of formation + Delta-G solvation = -103.271024 kcal Electronic energy + Delta-G solvation = -28833.523945 eV Core-core repulsion = 25008.981484 eV Total energy + Delta-G solvation = -3824.542461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21359 -40.81543 -39.98822 -37.89947 -37.06434 -35.23305 -33.79022 -33.09980 -31.55875 -30.51717 -29.25985 -28.25996 -25.73485 -25.23800 -24.53222 -23.82437 -22.18735 -21.85828 -19.81072 -18.99589 -18.77298 -18.65660 -17.90779 -17.46232 -16.90965 -16.61521 -16.55563 -16.39395 -15.95343 -15.44273 -15.10584 -14.82346 -14.75278 -14.40760 -14.31092 -13.80701 -13.71836 -13.52649 -13.45638 -13.15368 -12.97784 -12.87547 -12.74109 -12.55541 -12.43807 -12.36463 -12.17315 -12.02559 -11.93355 -11.65783 -11.54373 -11.23034 -11.03464 -10.88346 -10.55805 -9.69389 -9.18035 -9.03029 -8.12461 -6.08216 -0.25282 0.28795 1.39720 1.41794 1.51897 1.54580 2.12016 2.38646 2.45718 2.68176 3.14565 3.24938 3.65394 3.70589 3.96871 4.12600 4.17660 4.25507 4.30013 4.32501 4.36436 4.40705 4.42182 4.61842 4.64405 4.69396 4.75616 4.79269 4.92817 4.94819 5.03082 5.04763 5.12347 5.20251 5.20957 5.28803 5.40605 5.45150 5.56710 5.62753 5.66509 5.75029 5.77700 6.32261 6.41310 6.47194 6.55798 6.91915 7.04047 7.48531 9.00627 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.005742 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.482222 B = 4875.107541 C = 6277.822365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.166 3.834 4 C -0.234 4.234 5 C -0.014 4.014 6 C -0.199 4.199 7 C 0.537 3.463 8 O -0.537 6.537 9 O -0.505 6.505 10 C 0.009 3.991 11 C -0.160 4.160 12 C 0.072 3.928 13 N -0.520 5.520 14 C 0.097 3.903 15 H 0.016 0.984 16 C -0.147 4.147 17 C -0.006 4.006 18 C -0.510 4.510 19 H 0.062 0.938 20 C 0.018 3.982 21 N -0.933 5.933 22 Si 0.931 3.069 23 H -0.275 1.275 24 H -0.291 1.291 25 H -0.257 1.257 26 C 0.044 3.956 27 C -0.112 4.112 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.432 0.568 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.014 0.986 40 H 0.020 0.980 41 H 0.259 0.741 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 13.760 8.650 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.252 4.252 5 C -0.032 4.032 6 C -0.200 4.200 7 C 0.384 3.616 8 O -0.430 6.430 9 O -0.319 6.319 10 C 0.008 3.992 11 C -0.163 4.163 12 C -0.055 4.055 13 N -0.242 5.242 14 C -0.011 4.011 15 H 0.034 0.966 16 C -0.204 4.204 17 C -0.044 4.044 18 C -0.547 4.547 19 H 0.079 0.921 20 C -0.180 4.180 21 N -0.574 5.574 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.217 1.217 25 H -0.181 1.181 26 C -0.084 4.084 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.294 0.706 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.423 12.633 8.665 15.325 hybrid contribution -0.484 0.390 -0.759 0.981 sum -0.061 13.024 7.906 15.235 Atomic orbital electron populations 1.23274 0.76517 1.04986 1.02104 1.86196 1.23495 1.26790 1.86411 1.19625 0.92114 0.85409 0.91011 1.21433 1.01559 0.91294 1.10963 1.21366 0.92513 0.98393 0.90967 1.18957 0.94412 0.89790 1.16870 1.20574 0.84559 0.84941 0.71491 1.90822 1.15947 1.87997 1.48231 1.84505 1.44367 1.17559 1.85432 1.19559 0.96761 0.90178 0.92689 1.19786 0.91827 0.96987 1.07664 1.21605 0.87659 0.94207 1.02071 1.62572 1.16397 1.41460 1.03736 1.21429 0.96143 0.95994 0.87502 0.96563 1.22041 0.95490 1.01450 1.01435 1.19611 0.95485 0.94715 0.94598 1.21458 0.92549 1.05781 1.34948 0.92055 1.25681 0.95992 0.99718 0.96578 1.70036 1.13170 1.27095 1.47111 0.85950 0.80008 0.79761 0.78573 1.20022 1.21720 1.18086 1.22471 1.00120 0.87935 0.97834 1.21443 0.89484 1.00272 1.03789 0.92469 0.87977 0.89906 0.82130 0.81538 0.70645 0.91527 0.85805 0.91666 0.92329 0.91031 0.96783 0.96159 0.93171 0.88335 0.90511 0.90310 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.80 113.37 1.11 1.84 16 2 O -0.32 -12.55 9.58 -90.14 -0.86 -13.41 16 3 C 0.17 6.18 6.53 22.71 0.15 6.33 16 4 C -0.23 -6.80 9.00 22.27 0.20 -6.60 16 5 C -0.01 -0.38 9.60 22.47 0.22 -0.17 16 6 C -0.20 -6.06 5.88 -20.04 -0.12 -6.18 16 7 C 0.54 14.34 8.22 70.25 0.58 14.92 16 8 O -0.54 -16.34 13.90 19.80 0.28 -16.07 16 9 O -0.50 -9.12 12.65 -56.55 -0.72 -9.84 16 10 C 0.01 0.31 5.10 -19.61 -0.10 0.21 16 11 C -0.16 -6.25 4.65 -19.80 -0.09 -6.35 16 12 C 0.07 3.07 4.65 85.59 0.40 3.47 16 13 N -0.52 -20.31 4.88 -876.06 -4.27 -24.58 16 14 C 0.10 4.01 1.57 44.92 0.07 4.08 16 15 H 0.02 0.75 5.95 -2.39 -0.01 0.73 16 16 C -0.15 -4.82 8.23 71.98 0.59 -4.23 16 17 C -0.01 -0.31 3.66 29.85 0.11 -0.20 16 18 C -0.51 -28.37 7.18 25.60 0.18 -28.19 16 19 H 0.06 3.69 5.75 -2.91 -0.02 3.67 16 20 C 0.02 1.02 5.47 84.65 0.46 1.48 16 21 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 22 Si 0.93 44.96 27.36 68.60 1.88 46.83 16 23 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.26 -11.83 6.72 99.48 0.67 -11.16 16 26 C 0.04 1.39 5.39 86.23 0.47 1.86 16 27 C -0.11 -3.61 3.49 29.81 0.10 -3.50 16 28 H 0.06 1.59 7.64 -2.38 -0.02 1.57 16 29 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.08 1.73 7.64 -2.39 -0.02 1.71 16 31 H 0.16 3.62 6.25 -2.91 -0.02 3.60 16 32 H 0.17 3.26 7.59 -2.91 -0.02 3.23 16 33 H 0.43 3.55 9.11 -74.06 -0.67 2.87 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.12 6.39 3.58 -2.38 -0.01 6.38 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.07 4.91 -2.39 -0.01 2.05 16 39 H 0.01 0.67 7.53 -2.39 -0.02 0.66 16 40 H 0.02 0.98 7.24 -2.39 -0.02 0.97 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.10 2.71 6.64 -2.39 -0.02 2.69 16 43 H 0.08 2.28 8.05 -2.38 -0.02 2.26 16 44 H 0.08 2.69 5.61 -2.38 -0.01 2.67 16 45 H 0.11 3.27 5.97 -2.39 -0.01 3.26 16 Total: -1.00 -70.29 342.01 1.26 -69.03 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.33 Total: 25.07 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.33 Total: -21.23 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -3.97 Total: -80.39 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.30 Total: -39.32 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.83 kcal Total: -70.29 1.26 -69.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607214714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.240 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds