Wall clock time and date at job start Tue Mar 31 2020 12:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47507 * 2 1 4 4 C 1.53008 * 109.46893 * 120.00321 * 2 1 3 5 5 N 1.46497 * 109.47046 * 174.99625 * 4 2 1 6 6 C 1.34777 * 119.99676 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00212 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99502 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47467 * 305.00312 * 8 6 5 10 10 C 1.53001 * 109.47016 * 65.00824 * 8 6 5 11 11 O 1.45199 * 109.46677 * 185.00347 * 8 6 5 12 12 C 1.34705 * 116.99996 * 150.00386 * 11 8 6 13 13 O 1.21469 * 119.99950 * 359.97438 * 12 11 8 14 14 C 1.47770 * 120.00495 * 180.02562 * 12 11 8 15 15 C 1.39975 * 120.02621 * 359.72295 * 14 12 11 16 16 C 1.38315 * 120.35285 * 179.76542 * 15 14 12 17 17 C 1.37758 * 120.41667 * 0.51371 * 16 15 14 18 18 C 1.40758 * 120.05315 * 359.74137 * 17 16 15 19 19 C 1.41438 * 120.18088 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99773 * 334.91739 * 19 18 17 21 21 C 1.39932 * 120.00315 * 154.92114 * 19 18 17 22 22 N 1.30836 * 119.99955 * 342.59361 * 21 19 18 23 23 Si 1.86801 * 120.00302 * 162.60120 * 21 19 18 24 24 H 1.48506 * 109.46918 * 59.99787 * 23 21 19 25 25 H 1.48501 * 109.46997 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46968 * 299.99893 * 23 21 19 27 27 C 1.39041 * 120.03531 * 179.97438 * 14 12 11 28 28 H 1.08998 * 109.46974 * 300.00498 * 1 2 3 29 29 H 1.09003 * 109.46646 * 59.99471 * 1 2 3 30 30 H 1.08994 * 109.47640 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46974 * 239.99501 * 2 1 3 32 32 H 1.09000 * 109.47218 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46896 * 300.00074 * 3 2 1 34 34 H 1.09003 * 109.46559 * 59.99990 * 3 2 1 35 35 H 1.08999 * 109.47110 * 54.99337 * 4 2 1 36 36 H 1.09000 * 109.46602 * 294.99491 * 4 2 1 37 37 H 0.96999 * 119.99977 * 359.97438 * 5 4 2 38 38 H 1.08996 * 109.47089 * 59.99774 * 10 8 6 39 39 H 1.09000 * 109.46657 * 179.97438 * 10 8 6 40 40 H 1.09000 * 109.46460 * 299.99340 * 10 8 6 41 41 H 1.08001 * 119.82359 * 359.97438 * 15 14 12 42 42 H 1.07994 * 119.78975 * 180.25457 * 16 15 14 43 43 H 1.08002 * 119.97814 * 179.76911 * 17 16 15 44 44 H 0.96998 * 119.99815 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.20585 * 359.95321 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5000 -0.8266 1.1906 6 6 4.1730 -1.4286 2.1912 7 8 3.5698 -1.8835 3.1399 8 6 5.6749 -1.5373 2.1305 9 1 5.9667 -2.0227 1.1992 10 6 6.2903 -0.1379 2.1910 11 8 6.1489 -2.3235 3.2554 12 6 7.2779 -3.0350 3.0717 13 8 7.8504 -2.9999 2.0010 14 6 7.8194 -3.8590 4.1723 15 6 7.1628 -3.8962 5.4080 16 6 7.6610 -4.6689 6.4413 17 6 8.8144 -5.4025 6.2701 18 6 9.4916 -5.3737 5.0365 19 6 10.6757 -6.1262 4.8576 20 1 11.2839 -6.3870 5.7112 21 6 11.0594 -6.5327 3.5748 22 7 10.1881 -6.5267 2.5987 23 14 12.8154 -7.0842 3.2558 24 1 13.1296 -8.2559 4.1125 25 1 12.9638 -7.4620 1.8274 26 1 13.7485 -5.9738 3.5743 27 6 8.9844 -4.5941 3.9832 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6053 -1.7199 1.2952 36 1 1.7517 -0.1584 2.1370 37 1 3.9824 -0.4630 0.4316 38 1 5.9985 0.3475 3.1223 39 1 7.3766 -0.2166 2.1475 40 1 5.9344 0.4523 1.3465 41 1 6.2605 -3.3210 5.5542 42 1 7.1448 -4.6941 7.3895 43 1 9.1992 -6.0006 7.0829 44 1 10.4542 -6.8082 1.7094 45 1 9.4963 -4.5660 3.0327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:34 Heat of formation + Delta-G solvation = -123.716853 kcal Electronic energy + Delta-G solvation = -26105.696513 eV Core-core repulsion = 22280.267455 eV Total energy + Delta-G solvation = -3825.429058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41668 -39.35715 -37.43504 -36.90351 -35.74806 -33.78100 -33.65947 -31.75451 -30.14973 -29.48911 -27.62130 -26.72824 -25.44241 -24.61798 -22.82906 -20.99529 -20.91559 -20.31090 -19.75285 -18.00538 -17.47236 -16.71755 -16.24792 -15.79564 -15.67882 -15.38256 -15.01104 -14.78030 -14.53363 -14.17923 -13.76355 -13.55932 -13.40100 -13.15362 -12.95871 -12.83237 -12.61411 -12.54148 -12.37064 -12.26962 -11.68041 -11.60013 -11.53479 -11.35190 -11.18644 -11.15321 -11.10725 -10.76662 -10.53263 -10.51865 -10.23483 -9.77500 -9.69420 -9.49466 -9.28307 -9.23557 -7.74401 -7.54269 -6.82090 -4.43279 1.94946 2.51691 2.53946 2.79403 3.06156 3.07909 3.14928 3.47668 3.57439 3.90324 4.30858 4.44634 4.51693 4.57844 4.61466 4.84408 4.98939 5.10149 5.19753 5.23354 5.26981 5.38954 5.44502 5.53520 5.54436 5.61226 5.67955 5.71718 5.81996 5.87230 5.98586 6.15030 6.20480 6.45923 6.60843 6.87377 6.94253 6.97726 7.17294 7.25101 7.31688 7.69382 7.76295 7.91045 8.07417 8.10720 8.44046 8.49403 8.77232 8.79346 10.13483 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.002486 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.009951 B =11262.273198 C =11884.649170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.124 3.876 5 N -0.730 5.730 6 C 0.518 3.482 7 O -0.512 6.512 8 C 0.067 3.933 9 H 0.108 0.892 10 C -0.162 4.162 11 O -0.326 6.326 12 C 0.513 3.487 13 O -0.518 6.518 14 C -0.115 4.115 15 C -0.189 4.189 16 C -0.105 4.105 17 C -0.199 4.199 18 C 0.094 3.906 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.789 5.789 23 Si 0.912 3.088 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.088 4.088 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.285 0.715 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 13.394 -7.378 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.001 3.999 5 N -0.385 5.385 6 C 0.303 3.697 7 O -0.386 6.386 8 C 0.008 3.992 9 H 0.126 0.874 10 C -0.220 4.220 11 O -0.243 6.243 12 C 0.361 3.639 13 O -0.407 6.407 14 C -0.116 4.116 15 C -0.208 4.208 16 C -0.123 4.123 17 C -0.218 4.218 18 C 0.092 3.908 19 C -0.490 4.490 20 H 0.100 0.900 21 C -0.146 4.146 22 N -0.414 5.414 23 Si 0.736 3.264 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.107 4.107 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.943 13.003 -7.251 19.728 hybrid contribution 0.917 -0.121 -0.810 1.230 sum -12.026 12.883 -8.061 19.379 Atomic orbital electron populations 1.21761 0.93912 1.02333 1.02287 1.21372 0.96846 0.96728 0.97856 1.21883 1.01109 0.95505 1.02219 1.21453 0.79305 1.00957 0.98204 1.45883 1.07813 1.61016 1.23793 1.20278 0.88949 0.77890 0.82572 1.90749 1.69727 1.45543 1.32536 1.22274 0.90975 0.93778 0.92205 0.87449 1.22129 1.02797 0.93754 1.03294 1.86770 1.41725 1.56630 1.39127 1.22024 0.77212 0.76365 0.88321 1.90744 1.59086 1.63283 1.27633 1.18786 0.99201 1.01806 0.91844 1.20647 1.01746 1.05361 0.93079 1.20528 0.96699 0.97833 0.97232 1.21206 0.97213 1.04484 0.98939 1.17535 0.92298 0.90413 0.90546 1.19518 1.06263 1.29723 0.93500 0.89986 1.25959 0.99147 0.93726 0.95726 1.69777 1.34830 1.34075 1.02671 0.86307 0.82242 0.79853 0.78010 1.18940 1.20266 1.18722 1.21643 0.93928 0.94161 1.00985 0.92245 0.92123 0.92232 0.90409 0.92556 0.92333 0.92285 0.91286 0.91246 0.76501 0.90933 0.90341 0.90718 0.87573 0.88436 0.88292 0.90413 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.11 -0.65 2.96 -90.61 -0.27 -0.92 16 3 C -0.15 -0.80 9.07 37.16 0.34 -0.46 16 4 C 0.12 1.10 5.06 -4.04 -0.02 1.08 16 5 N -0.73 -7.24 5.25 -60.29 -0.32 -7.56 16 6 C 0.52 7.58 7.18 -10.98 -0.08 7.50 16 7 O -0.51 -9.73 16.51 -14.05 -0.23 -9.96 16 8 C 0.07 1.02 2.98 -27.88 -0.08 0.94 16 9 H 0.11 1.60 7.16 -51.93 -0.37 1.23 16 10 C -0.16 -1.92 9.50 37.16 0.35 -1.57 16 11 O -0.33 -6.57 8.66 -47.17 -0.41 -6.98 16 12 C 0.51 11.71 7.87 34.63 0.27 11.98 16 13 O -0.52 -12.30 15.59 -19.24 -0.30 -12.60 16 14 C -0.12 -2.84 5.87 -105.05 -0.62 -3.46 16 15 C -0.19 -4.36 9.62 -38.90 -0.37 -4.73 16 16 C -0.10 -2.34 10.01 -39.73 -0.40 -2.73 16 17 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 18 C 0.09 2.50 5.57 -106.87 -0.59 1.91 16 19 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 20 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 21 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -20.71 10.97 55.55 0.61 -20.10 16 23 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.09 -2.34 8.23 -38.43 -0.32 -2.66 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.29 7.18 -51.93 -0.37 -0.09 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.82 7.44 -40.82 -0.30 2.52 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 41 H 0.11 2.30 7.59 -52.49 -0.40 1.90 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 45 H 0.14 3.82 5.76 -52.48 -0.30 3.51 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -31.61 381.76 -8.96 -40.57 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.78 Total: 6.62 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.26 Total: -9.32 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.29 Total: -27.66 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.94 Total: -29.54 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.61 -8.96 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.146 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds