Wall clock time and date at job start Tue Mar 31 2020 12:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 C 1.53001 * 109.46797 * 119.99486 * 2 1 3 5 5 N 1.46503 * 109.47015 * 65.00335 * 4 2 1 6 6 C 1.34774 * 119.99980 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00366 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47038 * 54.99432 * 8 6 5 10 10 C 1.52996 * 109.46950 * 295.00102 * 8 6 5 11 11 O 1.45190 * 109.47336 * 174.99778 * 8 6 5 12 12 C 1.34707 * 116.99761 * 209.99989 * 11 8 6 13 13 O 1.21463 * 120.00288 * 0.02562 * 12 11 8 14 14 C 1.47778 * 119.99739 * 180.02562 * 12 11 8 15 15 C 1.39962 * 120.02983 * 359.72102 * 14 12 11 16 16 C 1.38324 * 120.35182 * 179.76606 * 15 14 12 17 17 C 1.37759 * 120.41565 * 0.51572 * 16 15 14 18 18 C 1.40754 * 120.05216 * 359.73996 * 17 16 15 19 19 C 1.41438 * 120.17618 * 180.02562 * 18 17 16 20 20 H 1.07993 * 119.99845 * 24.44403 * 19 18 17 21 21 C 1.39936 * 120.00142 * 204.44124 * 19 18 17 22 22 N 1.30829 * 119.99944 * 17.88053 * 21 19 18 23 23 Si 1.86796 * 120.00246 * 197.88170 * 21 19 18 24 24 H 1.48506 * 109.47026 * 90.00276 * 23 21 19 25 25 H 1.48500 * 109.47200 * 209.99689 * 23 21 19 26 26 H 1.48500 * 109.47040 * 330.00205 * 23 21 19 27 27 C 1.39050 * 120.02801 * 180.02562 * 14 12 11 28 28 H 1.09002 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47332 * 300.00323 * 1 2 3 30 30 H 1.09010 * 109.46763 * 60.00663 * 1 2 3 31 31 H 1.08997 * 109.47332 * 239.99677 * 2 1 3 32 32 H 1.08998 * 109.47414 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46925 * 299.99832 * 3 2 1 34 34 H 1.08998 * 109.47271 * 59.99042 * 3 2 1 35 35 H 1.08996 * 109.47414 * 305.00184 * 4 2 1 36 36 H 1.09003 * 109.46958 * 185.00105 * 4 2 1 37 37 H 0.96996 * 120.00384 * 359.97438 * 5 4 2 38 38 H 1.09002 * 109.47094 * 299.99907 * 10 8 6 39 39 H 1.09000 * 109.47612 * 179.97438 * 10 8 6 40 40 H 1.09000 * 109.47497 * 59.99304 * 10 8 6 41 41 H 1.08002 * 119.82482 * 359.97438 * 15 14 12 42 42 H 1.07998 * 119.79199 * 180.25442 * 16 15 14 43 43 H 1.07993 * 119.97500 * 179.76229 * 17 16 15 44 44 H 0.97003 * 120.00046 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.20472 * 359.94240 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 1.9954 -2.9679 2.1914 7 8 2.6254 -2.5509 3.1403 8 6 1.5963 -4.4198 2.1314 9 1 1.9560 -4.8574 1.2001 10 6 0.0717 -4.5326 2.1924 11 8 2.1794 -5.1289 3.2562 12 6 2.4729 -6.4308 3.0727 13 8 2.2483 -6.9590 2.0023 14 6 3.0682 -7.2163 4.1738 15 6 3.3327 -6.6068 5.4057 16 6 3.8853 -7.3370 6.4424 17 6 4.1915 -8.6692 6.2715 18 6 3.9376 -9.2982 5.0382 19 6 4.2505 -10.6660 4.8600 20 1 4.3028 -11.3237 5.7149 21 6 4.4920 -11.1670 3.5759 22 7 4.7754 -10.3472 2.5965 23 14 4.4099 -13.0062 3.2602 24 1 3.0252 -13.3812 2.8762 25 1 5.3419 -13.3618 2.1602 26 1 4.7970 -13.7379 4.4931 27 6 3.3719 -8.5600 3.9849 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2616 2.1370 36 1 3.1263 -0.6442 1.2953 37 1 1.1483 -2.4663 0.4321 38 1 -0.2880 -4.0950 3.1237 39 1 -0.2171 -5.5827 2.1486 40 1 -0.3661 -4.0002 1.3480 41 1 3.1010 -5.5617 5.5486 42 1 4.0819 -6.8586 7.3905 43 1 4.6263 -9.2315 7.0845 44 1 4.9432 -10.6945 1.7064 45 1 3.1732 -9.0336 3.0348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:37 Heat of formation + Delta-G solvation = -123.757409 kcal Electronic energy + Delta-G solvation = -26106.820868 eV Core-core repulsion = 22281.390050 eV Total energy + Delta-G solvation = -3825.430817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41641 -39.35666 -37.43516 -36.90352 -35.74855 -33.78523 -33.66077 -31.75470 -30.15172 -29.48723 -27.62121 -26.72843 -25.44512 -24.61831 -22.82855 -20.99564 -20.91577 -20.31111 -19.75280 -18.00681 -17.47321 -16.71909 -16.24765 -15.79941 -15.67901 -15.38382 -15.00938 -14.77676 -14.53503 -14.17889 -13.76198 -13.55944 -13.39967 -13.15624 -12.95909 -12.83438 -12.61666 -12.54428 -12.37072 -12.27018 -11.67728 -11.59999 -11.53450 -11.35173 -11.20462 -11.15356 -11.11351 -10.75631 -10.52013 -10.51778 -10.22669 -9.77122 -9.69390 -9.49162 -9.28329 -9.24538 -7.74562 -7.54722 -6.82743 -4.43354 1.94990 2.51695 2.53885 2.78353 3.06322 3.09619 3.13855 3.47656 3.57544 3.90087 4.30876 4.44592 4.51684 4.57331 4.61442 4.84439 4.98918 5.10145 5.19692 5.23329 5.26945 5.38927 5.44525 5.53495 5.54535 5.61259 5.67902 5.71767 5.81967 5.87233 5.98554 6.15078 6.20454 6.46139 6.60922 6.87418 6.94259 6.97873 7.17141 7.25080 7.31706 7.69496 7.76437 7.91222 8.07393 8.10652 8.44248 8.49487 8.77118 8.79259 10.12717 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.002487 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.532737 B =11257.969373 C =11883.710535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.124 3.876 5 N -0.730 5.730 6 C 0.518 3.482 7 O -0.512 6.512 8 C 0.067 3.933 9 H 0.108 0.892 10 C -0.162 4.162 11 O -0.326 6.326 12 C 0.513 3.487 13 O -0.518 6.518 14 C -0.115 4.115 15 C -0.189 4.189 16 C -0.105 4.105 17 C -0.199 4.199 18 C 0.094 3.906 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.788 5.788 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.089 4.089 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.284 0.716 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 16.362 -7.380 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.385 5.385 6 C 0.303 3.697 7 O -0.386 6.386 8 C 0.008 3.992 9 H 0.125 0.875 10 C -0.220 4.220 11 O -0.242 6.242 12 C 0.361 3.639 13 O -0.407 6.407 14 C -0.116 4.116 15 C -0.209 4.209 16 C -0.123 4.123 17 C -0.219 4.219 18 C 0.091 3.909 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.412 5.412 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.108 4.108 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.926 16.537 -7.248 19.719 hybrid contribution -0.211 -0.900 -0.817 1.234 sum -8.137 15.637 -8.065 19.384 Atomic orbital electron populations 1.21885 0.94607 1.02007 1.02219 1.21370 0.96542 0.97033 0.97856 1.21761 1.01391 0.94854 1.02288 1.21453 1.00341 0.79920 0.98203 1.45882 1.59009 1.09796 1.23813 1.20280 0.79496 0.87348 0.82570 1.90752 1.37943 1.77342 1.32528 1.22269 0.95074 0.89677 0.92210 0.87454 1.22128 0.92143 1.04408 1.03296 1.86770 1.73820 1.24527 1.39133 1.22027 0.74185 0.79400 0.88313 1.90743 1.51643 1.70703 1.27650 1.18789 1.06849 0.94098 0.91893 1.20645 1.08187 0.98923 0.93107 1.20530 1.00001 0.94572 0.97180 1.21201 1.07482 0.94264 0.98923 1.17541 0.89418 0.93334 0.90558 1.19562 1.42011 0.93960 0.93393 0.89925 1.25965 0.92227 1.00653 0.95742 1.69786 1.31633 1.37331 1.02498 0.86252 0.79120 0.82084 0.78952 1.19164 1.20248 1.18541 1.21652 0.97391 0.90770 1.00982 0.92558 0.92290 0.92326 0.90405 0.92231 0.92117 0.92250 0.91246 0.91284 0.76501 0.90930 0.90341 0.90724 0.87574 0.88438 0.88297 0.90461 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.07 37.16 0.34 -0.46 16 2 C -0.11 -0.65 2.96 -90.62 -0.27 -0.92 16 3 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 4 C 0.12 1.10 5.06 -4.04 -0.02 1.08 16 5 N -0.73 -7.24 5.25 -60.29 -0.32 -7.56 16 6 C 0.52 7.58 7.18 -10.99 -0.08 7.51 16 7 O -0.51 -9.73 16.51 -14.06 -0.23 -9.96 16 8 C 0.07 1.02 2.98 -27.89 -0.08 0.94 16 9 H 0.11 1.60 7.16 -51.93 -0.37 1.23 16 10 C -0.16 -1.93 9.50 37.16 0.35 -1.57 16 11 O -0.33 -6.57 8.66 -47.18 -0.41 -6.98 16 12 C 0.51 11.71 7.87 34.63 0.27 11.98 16 13 O -0.52 -12.31 15.59 -19.24 -0.30 -12.61 16 14 C -0.11 -2.84 5.87 -105.05 -0.62 -3.45 16 15 C -0.19 -4.36 9.62 -38.90 -0.37 -4.74 16 16 C -0.10 -2.33 10.01 -39.72 -0.40 -2.73 16 17 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 18 C 0.09 2.48 5.57 -106.87 -0.60 1.89 16 19 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 20 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 21 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 22 N -0.79 -20.67 10.96 55.55 0.61 -20.06 16 23 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 27 C -0.09 -2.36 8.24 -38.42 -0.32 -2.68 16 28 H 0.06 0.29 7.18 -51.93 -0.37 -0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 2.82 7.44 -40.82 -0.30 2.52 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 41 H 0.11 2.31 7.59 -52.49 -0.40 1.91 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 45 H 0.14 3.83 5.74 -52.49 -0.30 3.53 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -31.62 381.73 -8.96 -40.58 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.78 Total: 6.61 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.26 Total: -9.35 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.29 Total: -27.62 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.94 Total: -29.55 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.62 -8.96 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.173 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds