Wall clock time and date at job start Tue Mar 31 2020 12:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 C 1.53001 * 109.46797 * 119.99486 * 2 1 3 5 5 N 1.46503 * 109.47015 * 65.00335 * 4 2 1 6 6 C 1.34774 * 119.99980 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00366 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47038 * 54.99432 * 8 6 5 10 10 C 1.52996 * 109.46950 * 295.00102 * 8 6 5 11 11 O 1.45190 * 109.47336 * 174.99778 * 8 6 5 12 12 C 1.34707 * 116.99761 * 209.99989 * 11 8 6 13 13 O 1.21463 * 120.00288 * 0.02562 * 12 11 8 14 14 C 1.47778 * 119.99739 * 180.02562 * 12 11 8 15 15 C 1.39962 * 120.02983 * 359.72102 * 14 12 11 16 16 C 1.38324 * 120.35182 * 179.76606 * 15 14 12 17 17 C 1.37759 * 120.41565 * 0.51572 * 16 15 14 18 18 C 1.40754 * 120.05216 * 359.73996 * 17 16 15 19 19 C 1.41438 * 120.17618 * 180.02562 * 18 17 16 20 20 H 1.07993 * 119.99845 * 24.44403 * 19 18 17 21 21 C 1.39936 * 120.00142 * 204.44124 * 19 18 17 22 22 N 1.30829 * 119.99944 * 17.88053 * 21 19 18 23 23 Si 1.86796 * 120.00246 * 197.88170 * 21 19 18 24 24 H 1.48506 * 109.47026 * 90.00276 * 23 21 19 25 25 H 1.48500 * 109.47200 * 209.99689 * 23 21 19 26 26 H 1.48500 * 109.47040 * 330.00205 * 23 21 19 27 27 C 1.39050 * 120.02801 * 180.02562 * 14 12 11 28 28 H 1.09002 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47332 * 300.00323 * 1 2 3 30 30 H 1.09010 * 109.46763 * 60.00663 * 1 2 3 31 31 H 1.08997 * 109.47332 * 239.99677 * 2 1 3 32 32 H 1.08998 * 109.47414 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46925 * 299.99832 * 3 2 1 34 34 H 1.08998 * 109.47271 * 59.99042 * 3 2 1 35 35 H 1.08996 * 109.47414 * 305.00184 * 4 2 1 36 36 H 1.09003 * 109.46958 * 185.00105 * 4 2 1 37 37 H 0.96996 * 120.00384 * 359.97438 * 5 4 2 38 38 H 1.09002 * 109.47094 * 299.99907 * 10 8 6 39 39 H 1.09000 * 109.47612 * 179.97438 * 10 8 6 40 40 H 1.09000 * 109.47497 * 59.99304 * 10 8 6 41 41 H 1.08002 * 119.82482 * 359.97438 * 15 14 12 42 42 H 1.07998 * 119.79199 * 180.25442 * 16 15 14 43 43 H 1.07993 * 119.97500 * 179.76229 * 17 16 15 44 44 H 0.97003 * 120.00046 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.20472 * 359.94240 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 1.9954 -2.9679 2.1914 7 8 2.6254 -2.5509 3.1403 8 6 1.5963 -4.4198 2.1314 9 1 1.9560 -4.8574 1.2001 10 6 0.0717 -4.5326 2.1924 11 8 2.1794 -5.1289 3.2562 12 6 2.4729 -6.4308 3.0727 13 8 2.2483 -6.9590 2.0023 14 6 3.0682 -7.2163 4.1738 15 6 3.3327 -6.6068 5.4057 16 6 3.8853 -7.3370 6.4424 17 6 4.1915 -8.6692 6.2715 18 6 3.9376 -9.2982 5.0382 19 6 4.2505 -10.6660 4.8600 20 1 4.3028 -11.3237 5.7149 21 6 4.4920 -11.1670 3.5759 22 7 4.7754 -10.3472 2.5965 23 14 4.4099 -13.0062 3.2602 24 1 3.0252 -13.3812 2.8762 25 1 5.3419 -13.3618 2.1602 26 1 4.7970 -13.7379 4.4931 27 6 3.3719 -8.5600 3.9849 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2616 2.1370 36 1 3.1263 -0.6442 1.2953 37 1 1.1483 -2.4663 0.4321 38 1 -0.2880 -4.0950 3.1237 39 1 -0.2171 -5.5827 2.1486 40 1 -0.3661 -4.0002 1.3480 41 1 3.1010 -5.5617 5.5486 42 1 4.0819 -6.8586 7.3905 43 1 4.6263 -9.2315 7.0845 44 1 4.9432 -10.6945 1.7064 45 1 3.1732 -9.0336 3.0348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051525488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:36 Heat of formation + Delta-G solvation = -140.907896 kcal Electronic energy + Delta-G solvation = -26107.564568 eV Core-core repulsion = 22281.390050 eV Total energy + Delta-G solvation = -3826.174518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88378 -40.73065 -39.21124 -37.84084 -37.30453 -35.64266 -34.66085 -32.97674 -31.92317 -31.37149 -28.04365 -27.55025 -27.33576 -25.98636 -24.34078 -22.88288 -21.82400 -21.57486 -21.06274 -19.76797 -18.70513 -18.34308 -17.51334 -17.32122 -17.05312 -16.64615 -16.48333 -16.33222 -15.80384 -15.29294 -15.18135 -14.84270 -14.51483 -14.39356 -14.37606 -14.13289 -13.83554 -13.56863 -13.39725 -13.29854 -13.04637 -12.91448 -12.85636 -12.75267 -12.58329 -12.22632 -12.06981 -12.05448 -11.98149 -11.87168 -11.65360 -11.56734 -11.37410 -11.10606 -10.93414 -10.25196 -9.65025 -9.47255 -8.69538 -6.40781 0.07964 0.94387 1.22859 1.34910 1.38480 1.46108 1.53018 1.75637 2.19419 2.23554 2.70257 3.45636 3.60326 3.68763 3.75397 3.81693 3.87084 3.94402 4.11029 4.38018 4.52005 4.56833 4.57502 4.60792 4.65499 4.75821 4.82411 4.83875 4.99770 4.99916 5.03098 5.03784 5.09822 5.16584 5.22388 5.24148 5.26718 5.40631 5.42243 5.46183 5.78694 5.87394 5.98923 6.19914 6.31511 6.50943 6.73153 6.84570 6.86576 7.02104 8.28262 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.002487 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.532737 B =11257.969373 C =11883.710535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.145 4.145 4 C 0.121 3.879 5 N -0.705 5.705 6 C 0.522 3.478 7 O -0.563 6.563 8 C 0.056 3.944 9 H 0.111 0.889 10 C -0.156 4.156 11 O -0.334 6.334 12 C 0.518 3.482 13 O -0.535 6.535 14 C -0.128 4.128 15 C -0.185 4.185 16 C -0.099 4.099 17 C -0.202 4.202 18 C 0.065 3.935 19 C -0.491 4.491 20 H 0.089 0.911 21 C 0.030 3.970 22 N -0.825 5.825 23 Si 0.986 3.014 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.251 1.251 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.418 0.582 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.289 0.711 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 17.227 -7.808 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.002 4.002 5 N -0.359 5.359 6 C 0.307 3.693 7 O -0.440 6.440 8 C -0.002 4.002 9 H 0.129 0.871 10 C -0.213 4.213 11 O -0.250 6.250 12 C 0.366 3.634 13 O -0.427 6.427 14 C -0.130 4.130 15 C -0.205 4.205 16 C -0.117 4.117 17 C -0.222 4.222 18 C 0.063 3.937 19 C -0.520 4.520 20 H 0.107 0.893 21 C -0.185 4.185 22 N -0.451 5.451 23 Si 0.806 3.194 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.174 1.174 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.135 0.865 44 H 0.100 0.900 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.918 17.444 -7.708 21.053 hybrid contribution 0.058 -0.955 -0.686 1.178 sum -8.860 16.488 -8.394 20.514 Atomic orbital electron populations 1.21899 0.93746 1.02464 1.02634 1.21333 0.97145 0.97041 0.96382 1.21774 1.01230 0.94444 1.02880 1.21599 0.99742 0.79100 0.99709 1.45733 1.57543 1.09822 1.22838 1.20197 0.79059 0.87276 0.82812 1.90733 1.40540 1.78041 1.34722 1.22755 0.97156 0.89625 0.90706 0.87086 1.22158 0.89457 1.04340 1.05350 1.86703 1.73842 1.23120 1.41359 1.21705 0.73931 0.80237 0.87550 1.90715 1.52395 1.71419 1.28144 1.19048 1.06707 0.93909 0.93297 1.20916 1.07285 0.99636 0.92638 1.20939 0.98347 0.93921 0.98501 1.21496 1.06999 0.95212 0.98476 1.17924 0.90009 0.94116 0.91636 1.19864 1.43365 0.94345 0.94412 0.89318 1.26890 0.91108 1.05498 0.95048 1.69873 1.32561 1.39592 1.03072 0.85136 0.79145 0.75865 0.79203 1.18885 1.19454 1.17426 1.21475 0.99925 0.91938 1.00535 0.92085 0.92714 0.91146 0.89505 0.92578 0.90838 0.92366 0.91879 0.92527 0.74454 0.90851 0.91569 0.86267 0.86040 0.84406 0.86467 0.90044 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.07 71.98 0.65 -0.55 16 2 C -0.10 -0.98 2.96 -10.79 -0.03 -1.01 16 3 C -0.15 -1.29 9.19 71.98 0.66 -0.63 16 4 C 0.12 2.01 5.06 86.38 0.44 2.44 16 5 N -0.70 -12.80 5.25 -463.05 -2.43 -15.22 16 6 C 0.52 14.89 7.18 87.66 0.63 15.52 16 7 O -0.56 -21.49 16.51 15.69 0.26 -21.23 16 8 C 0.06 1.68 2.98 29.85 0.09 1.76 16 9 H 0.11 3.25 7.16 -2.39 -0.02 3.23 16 10 C -0.16 -3.44 9.50 71.98 0.68 -2.76 16 11 O -0.33 -13.57 8.66 -49.80 -0.43 -14.00 16 12 C 0.52 24.21 7.87 70.35 0.55 24.76 16 13 O -0.54 -26.24 15.59 19.96 0.31 -25.93 16 14 C -0.13 -6.49 5.87 -20.14 -0.12 -6.61 16 15 C -0.19 -8.47 9.62 22.71 0.22 -8.25 16 16 C -0.10 -4.27 10.01 22.18 0.22 -4.05 16 17 C -0.20 -9.62 9.78 22.77 0.22 -9.39 16 18 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 19 C -0.49 -26.18 9.05 23.47 0.21 -25.96 16 20 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 21 C 0.03 1.51 5.14 85.25 0.44 1.95 16 22 N -0.83 -44.87 10.96 21.82 0.24 -44.63 16 23 Si 0.99 38.47 29.59 68.60 2.03 40.50 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 27 C -0.12 -6.61 8.24 23.02 0.19 -6.42 16 28 H 0.06 0.43 7.18 -2.39 -0.02 0.41 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.42 4.73 7.44 -92.71 -0.69 4.04 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 1.53 7.92 -2.39 -0.02 1.51 16 41 H 0.12 5.14 7.59 -2.91 -0.02 5.12 16 42 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 44 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 45 H 0.11 6.62 5.74 -2.91 -0.02 6.61 16 Total: -1.00 -71.55 381.73 5.23 -66.33 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.31 Total: 29.96 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.94 Total: -15.77 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -2.19 Total: -59.86 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: 0.14 Total: -61.16 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -71.55 5.23 -66.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.581 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds