Wall clock time and date at job start Tue Mar 31 2020 12:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47200 * 2 1 4 4 C 1.46498 * 120.00268 * 270.00274 * 3 2 1 5 5 C 1.50699 * 109.47207 * 270.00245 * 4 3 2 6 6 H 1.08008 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00334 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00187 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47250 * 59.99753 * 9 7 5 11 11 H 1.48506 * 109.47186 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47330 * 299.99657 * 9 7 5 13 13 C 1.34779 * 119.99781 * 90.00220 * 3 2 1 14 14 O 1.21274 * 119.99868 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99861 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46893 * 179.97438 * 15 13 3 17 17 C 1.34225 * 116.99836 * 179.97438 * 16 15 13 18 18 O 1.20829 * 120.00148 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00084 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47299 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 17 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46842 * 300.00084 * 1 2 3 29 29 H 1.08997 * 109.47280 * 59.99310 * 1 2 3 30 30 H 1.08998 * 109.46407 * 240.00072 * 2 1 3 31 31 H 1.08993 * 109.46839 * 120.00524 * 2 1 3 32 32 H 1.08993 * 109.47144 * 29.99855 * 4 3 2 33 33 H 1.08999 * 109.47132 * 150.00632 * 4 3 2 34 34 H 0.97003 * 120.00230 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47127 * 59.99509 * 15 13 3 36 36 H 1.08999 * 109.46772 * 299.99602 * 15 13 3 37 37 H 1.08995 * 109.47274 * 60.00255 * 19 17 16 38 38 H 1.09004 * 109.47166 * 300.00402 * 19 17 16 39 39 H 1.09005 * 109.47610 * 60.00298 * 20 19 17 40 40 H 1.09000 * 109.47256 * 299.99639 * 20 19 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0975 -3.4164 10 1 6.1416 0.6409 -3.5943 11 1 6.1612 2.7975 -4.7025 12 1 6.8410 2.6207 -2.3811 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1597 1.1673 15 6 1.9925 1.3058 2.4724 16 8 2.3075 2.1952 3.5760 17 6 2.1365 1.7114 4.8163 18 8 1.7373 0.5820 4.9746 19 6 2.4436 2.5764 6.0115 20 6 2.1662 1.7906 7.2946 21 6 2.4739 2.6555 8.4898 22 6 1.4866 3.4521 9.0390 23 6 1.7687 4.2450 10.1357 24 6 3.0378 4.2408 10.6835 25 6 4.0265 3.4483 10.1310 26 6 3.7432 2.6519 9.0372 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6878 -2.0283 33 1 2.0957 3.1411 -1.1382 34 1 3.6754 3.5172 -4.4434 35 1 2.6229 0.4185 2.5298 36 1 0.9446 1.0113 2.5303 37 1 1.8148 3.4664 5.9870 38 1 3.4925 2.8719 5.9863 39 1 2.7954 0.9008 7.3190 40 1 1.1174 1.4949 7.3200 41 1 0.4948 3.4549 8.6113 42 1 0.9974 4.8676 10.5645 43 1 3.2580 4.8600 11.5405 44 1 5.0193 3.4484 10.5563 45 1 4.5144 2.0290 8.6086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060771810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:36 Heat of formation + Delta-G solvation = -106.095369 kcal Electronic energy + Delta-G solvation = -25555.234767 eV Core-core repulsion = 21730.569833 eV Total energy + Delta-G solvation = -3824.664934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64789 -39.56677 -38.93655 -36.51804 -35.31536 -34.40269 -32.85217 -31.19803 -30.46353 -30.16359 -29.00061 -26.65042 -25.11766 -23.09451 -22.88782 -22.64261 -21.55053 -20.55413 -18.67421 -17.93957 -16.97951 -16.90496 -16.62696 -16.42668 -15.93504 -15.62813 -15.35913 -15.13007 -14.70012 -14.27721 -13.87844 -13.65107 -13.53051 -13.47212 -13.30792 -13.04703 -12.77277 -12.52855 -12.18454 -12.09205 -12.05423 -11.64481 -11.61882 -11.34161 -11.24218 -11.15665 -10.96666 -10.88085 -10.63025 -10.58113 -10.51852 -10.15871 -9.68995 -9.23142 -9.05713 -8.98667 -8.45387 -7.76640 -6.06627 -4.11644 1.00751 1.09090 2.13600 2.47791 3.23998 3.31221 3.35579 3.39451 3.46995 3.85755 4.40109 4.44760 4.50481 4.64608 4.69806 4.81673 4.82159 4.86602 4.93411 5.14693 5.18878 5.20735 5.22301 5.27828 5.29208 5.36384 5.52001 5.57459 5.64635 5.71906 5.75510 5.81964 5.98445 6.15059 6.17872 6.20802 6.31414 6.37733 6.43580 6.69063 6.98643 7.38453 7.45904 7.68749 7.89239 8.19333 8.28608 8.83365 8.98136 9.53317 11.01480 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.002202 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.253838 B =12710.383432 C =13580.484882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.329 6.329 17 C 0.461 3.539 18 O -0.514 6.514 19 C -0.108 4.108 20 C -0.069 4.069 21 C -0.083 4.083 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -3.327 24.801 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.028 4.028 16 O -0.244 6.244 17 C 0.304 3.696 18 O -0.403 6.403 19 C -0.145 4.145 20 C -0.107 4.107 21 C -0.083 4.083 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.132 4.132 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.539 -2.934 24.598 25.185 hybrid contribution 0.912 -0.353 -0.449 1.076 sum -3.627 -3.286 24.149 24.640 Atomic orbital electron populations 1.22234 0.96537 1.01688 1.02407 1.21506 0.93753 0.83960 1.03020 1.48215 1.63827 1.13398 1.07152 1.19324 0.96461 0.93703 0.77569 1.21386 0.96844 1.32149 1.06383 0.92459 1.24935 0.97934 0.94861 0.96360 1.69921 1.35756 1.33261 1.14358 0.86541 0.84692 0.78253 0.77832 1.20238 1.21153 1.20146 1.19729 0.79726 0.87160 0.84324 1.90715 1.44465 1.17537 1.86742 1.22965 1.02668 0.92660 0.84497 1.86575 1.78382 1.44998 1.14444 1.23792 0.74093 0.86955 0.84763 1.90658 1.42731 1.20130 1.86781 1.21369 1.05669 0.98821 0.88665 1.20420 1.03858 0.97011 0.89363 1.19831 0.93938 0.97688 0.96844 1.21113 0.99206 0.96473 0.96470 1.21164 0.96939 0.99130 0.96477 1.21176 0.93506 0.99405 1.00148 1.21169 0.99329 0.96714 0.96472 1.21121 0.96237 0.99396 0.96491 0.91896 0.93152 0.91779 0.89418 0.91761 0.94628 0.93715 0.92608 0.88705 0.88771 0.87302 0.87267 0.89827 0.89842 0.85886 0.86045 0.86186 0.86032 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.41 5.16 -5.20 -0.03 6.38 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.73 7.75 -10.98 -0.09 10.64 16 14 O -0.52 -13.41 16.08 -14.10 -0.23 -13.64 16 15 C 0.05 0.80 4.50 36.01 0.16 0.96 16 16 O -0.33 -5.41 9.75 -45.89 -0.45 -5.85 16 17 C 0.46 6.17 7.96 36.00 0.29 6.45 16 18 O -0.51 -7.65 15.73 -18.75 -0.29 -7.94 16 19 C -0.11 -1.03 5.79 -27.89 -0.16 -1.19 16 20 C -0.07 -0.59 4.63 -27.88 -0.13 -0.72 16 21 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 22 C -0.11 -0.91 9.70 -39.58 -0.38 -1.29 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 26 C -0.11 -0.92 9.70 -39.58 -0.38 -1.30 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.09 1.39 7.39 -51.93 -0.38 1.01 16 36 H 0.09 1.33 7.18 -51.93 -0.37 0.95 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 40 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 41 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -34.65 386.52 -9.25 -43.90 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.88 Total: -1.56 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.52 Total: 1.00 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.31 Total: -38.50 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.97 Total: -27.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.65 -9.25 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060771810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.191 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds