Wall clock time and date at job start Tue Mar 31 2020 12:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47200 * 2 1 4 4 C 1.46498 * 120.00268 * 270.00274 * 3 2 1 5 5 C 1.50699 * 109.47207 * 270.00245 * 4 3 2 6 6 H 1.08008 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00334 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00187 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47250 * 59.99753 * 9 7 5 11 11 H 1.48506 * 109.47186 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47330 * 299.99657 * 9 7 5 13 13 C 1.34779 * 119.99781 * 90.00220 * 3 2 1 14 14 O 1.21274 * 119.99868 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99861 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46893 * 179.97438 * 15 13 3 17 17 C 1.34225 * 116.99836 * 179.97438 * 16 15 13 18 18 O 1.20829 * 120.00148 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00084 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.47299 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 17 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46842 * 300.00084 * 1 2 3 29 29 H 1.08997 * 109.47280 * 59.99310 * 1 2 3 30 30 H 1.08998 * 109.46407 * 240.00072 * 2 1 3 31 31 H 1.08993 * 109.46839 * 120.00524 * 2 1 3 32 32 H 1.08993 * 109.47144 * 29.99855 * 4 3 2 33 33 H 1.08999 * 109.47132 * 150.00632 * 4 3 2 34 34 H 0.97003 * 120.00230 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47127 * 59.99509 * 15 13 3 36 36 H 1.08999 * 109.46772 * 299.99602 * 15 13 3 37 37 H 1.08995 * 109.47274 * 60.00255 * 19 17 16 38 38 H 1.09004 * 109.47166 * 300.00402 * 19 17 16 39 39 H 1.09005 * 109.47610 * 60.00298 * 20 19 17 40 40 H 1.09000 * 109.47256 * 299.99639 * 20 19 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0975 -3.4164 10 1 6.1416 0.6409 -3.5943 11 1 6.1612 2.7975 -4.7025 12 1 6.8410 2.6207 -2.3811 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1597 1.1673 15 6 1.9925 1.3058 2.4724 16 8 2.3075 2.1952 3.5760 17 6 2.1365 1.7114 4.8163 18 8 1.7373 0.5820 4.9746 19 6 2.4436 2.5764 6.0115 20 6 2.1662 1.7906 7.2946 21 6 2.4739 2.6555 8.4898 22 6 1.4866 3.4521 9.0390 23 6 1.7687 4.2450 10.1357 24 6 3.0378 4.2408 10.6835 25 6 4.0265 3.4483 10.1310 26 6 3.7432 2.6519 9.0372 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6878 -2.0283 33 1 2.0957 3.1411 -1.1382 34 1 3.6754 3.5172 -4.4434 35 1 2.6229 0.4185 2.5298 36 1 0.9446 1.0113 2.5303 37 1 1.8148 3.4664 5.9870 38 1 3.4925 2.8719 5.9863 39 1 2.7954 0.9008 7.3190 40 1 1.1174 1.4949 7.3200 41 1 0.4948 3.4549 8.6113 42 1 0.9974 4.8676 10.5645 43 1 3.2580 4.8600 11.5405 44 1 5.0193 3.4484 10.5563 45 1 4.5144 2.0290 8.6086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060771810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:35 Heat of formation + Delta-G solvation = -124.342751 kcal Electronic energy + Delta-G solvation = -25556.026033 eV Core-core repulsion = 21730.569833 eV Total energy + Delta-G solvation = -3825.456199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80518 -40.62603 -40.06223 -37.72310 -36.98492 -35.11489 -34.93854 -31.79035 -31.73237 -31.25140 -30.31779 -28.40453 -26.01755 -24.81783 -24.12195 -23.42896 -22.36728 -21.41334 -20.26504 -19.03337 -18.64505 -18.05778 -17.90635 -17.66022 -17.28963 -16.83398 -16.49810 -16.12198 -15.91654 -15.73465 -14.95072 -14.83982 -14.60398 -14.34316 -14.19503 -14.15446 -13.89850 -13.72846 -13.56348 -13.50237 -13.28414 -13.08960 -12.85256 -12.66231 -12.52348 -12.26954 -12.21848 -12.05128 -11.93240 -11.80789 -11.74676 -11.70539 -11.64601 -10.73731 -10.64714 -9.78283 -9.61137 -9.55253 -8.23507 -6.38109 0.43110 0.53913 1.08986 1.31101 1.37260 1.41228 1.48517 1.61567 2.32347 2.45401 2.91183 3.06418 3.42436 3.54255 3.88055 3.90651 3.95806 3.97933 4.14090 4.16296 4.20694 4.23928 4.35209 4.37517 4.55562 4.58394 4.62168 4.67883 4.88275 4.92234 4.94032 5.02310 5.04097 5.17675 5.19538 5.21829 5.32438 5.35681 5.53578 5.61243 5.67145 5.73643 5.79164 6.03625 6.15756 6.53810 6.66109 6.70935 7.20808 7.36130 8.83713 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.002202 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.253838 B =12710.383432 C =13580.484882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.498 3.502 14 O -0.578 6.578 15 C 0.062 3.938 16 O -0.352 6.352 17 C 0.463 3.537 18 O -0.528 6.528 19 C -0.102 4.102 20 C -0.060 4.060 21 C -0.094 4.094 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -4.774 26.451 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.268 6.268 17 C 0.308 3.692 18 O -0.417 6.417 19 C -0.139 4.139 20 C -0.098 4.098 21 C -0.094 4.094 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.145 4.145 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.213 -4.441 26.268 26.972 hybrid contribution 0.756 0.106 -0.902 1.182 sum -3.457 -4.335 25.366 25.965 Atomic orbital electron populations 1.22176 0.94319 1.03782 1.01837 1.21862 0.95564 0.80974 1.04389 1.48215 1.63590 1.15255 1.05704 1.18784 0.95597 0.91645 0.79790 1.21670 0.97806 1.32258 1.06652 0.92736 1.25862 1.02448 0.94441 0.96423 1.70040 1.37812 1.34007 1.14792 0.85465 0.78945 0.79047 0.77340 1.18412 1.20338 1.20364 1.20599 0.78310 0.86656 0.85915 1.90677 1.47140 1.20237 1.87776 1.22806 1.04660 0.92036 0.81989 1.86588 1.78982 1.45753 1.15462 1.24447 0.73260 0.87175 0.84323 1.90646 1.43501 1.20886 1.86701 1.21494 1.06516 0.98681 0.87208 1.20328 1.03690 0.96786 0.88946 1.19851 0.94361 0.98154 0.97006 1.21332 0.99672 0.96547 0.96825 1.21451 0.97599 0.99191 0.96360 1.21490 0.93435 0.99395 1.00623 1.21445 1.00282 0.96547 0.96379 1.21329 0.96442 0.99816 0.96909 0.88386 0.92407 0.93709 0.90032 0.88390 0.95246 0.98280 0.92344 0.86547 0.86071 0.86034 0.86252 0.90134 0.89955 0.84918 0.84383 0.84384 0.84482 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.09 2.81 5.93 86.38 0.51 3.32 16 3 N -0.60 -25.19 2.46 -826.17 -2.03 -27.22 16 4 C 0.26 14.13 5.16 85.63 0.44 14.58 16 5 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 9 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.50 21.32 7.75 87.66 0.68 22.00 16 14 O -0.58 -31.10 16.08 15.79 0.25 -30.85 16 15 C 0.06 1.91 4.50 71.24 0.32 2.23 16 16 O -0.35 -11.23 9.75 -45.01 -0.44 -11.67 16 17 C 0.46 11.71 7.96 71.23 0.57 12.27 16 18 O -0.53 -14.65 15.73 21.96 0.35 -14.31 16 19 C -0.10 -1.79 5.79 29.85 0.17 -1.62 16 20 C -0.06 -0.95 4.63 29.85 0.14 -0.81 16 21 C -0.09 -1.45 5.13 -19.86 -0.10 -1.55 16 22 C -0.13 -1.82 9.70 22.27 0.22 -1.61 16 23 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 24 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 26 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 31 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 32 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 33 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.12 3.10 7.39 -2.39 -0.02 3.09 16 36 H 0.12 3.09 7.18 -2.39 -0.02 3.07 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.08 1.31 8.04 -2.38 -0.02 1.29 16 40 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 41 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 44 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 45 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -77.56 386.52 6.69 -70.87 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.97 Total: 12.77 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.27 Total: 9.24 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.74 Total: -82.93 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: 0.16 Total: -56.83 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -77.56 6.69 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060771810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.470 kcal (2) G-P(sol) polarization free energy of solvation -77.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds