Wall clock time and date at job start Tue Mar 31 2020 12:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47129 * 2 1 4 4 C 1.46497 * 120.00206 * 270.00202 * 3 2 1 5 5 C 1.50701 * 109.46747 * 270.00108 * 4 3 2 6 6 H 1.07996 * 120.00498 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99739 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00268 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00204 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47075 * 89.99853 * 9 7 5 11 11 H 1.48498 * 109.47374 * 210.00083 * 9 7 5 12 12 H 1.48500 * 109.46968 * 330.00228 * 9 7 5 13 13 C 1.34780 * 119.99845 * 90.00367 * 3 2 1 14 14 O 1.21282 * 119.99851 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00151 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47156 * 180.02562 * 15 13 3 17 17 C 1.34710 * 116.99859 * 179.97438 * 16 15 13 18 18 O 1.21467 * 120.00268 * 0.02562 * 17 16 15 19 19 C 1.47733 * 119.99956 * 179.97438 * 17 16 15 20 20 C 1.39649 * 120.14867 * 353.91381 * 19 17 16 21 21 C 1.37920 * 119.84545 * 180.02562 * 20 19 17 22 22 C 1.38388 * 120.15062 * 0.27624 * 21 20 19 23 23 C 1.38348 * 120.30255 * 359.44628 * 22 21 20 24 24 C 1.50695 * 119.92383 * 180.29941 * 23 22 21 25 25 C 1.37962 * 120.15091 * 0.55149 * 23 22 21 26 26 C 1.50700 * 120.07750 * 179.74705 * 25 23 22 27 27 H 1.09009 * 109.47087 * 299.99642 * 1 2 3 28 28 H 1.08996 * 109.47290 * 59.99975 * 1 2 3 29 29 H 1.09006 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46643 * 239.99778 * 2 1 3 31 31 H 1.09008 * 109.46919 * 120.00200 * 2 1 3 32 32 H 1.08996 * 109.47172 * 29.99726 * 4 3 2 33 33 H 1.08999 * 109.46947 * 150.00005 * 4 3 2 34 34 H 0.96999 * 120.00566 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.46698 * 60.00411 * 15 13 3 36 36 H 1.09003 * 109.47073 * 300.00442 * 15 13 3 37 37 H 1.08002 * 120.07697 * 359.97438 * 20 19 17 38 38 H 1.08004 * 119.92019 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.84184 * 179.72051 * 22 21 20 40 40 H 1.09005 * 109.47219 * 270.25376 * 24 23 22 41 41 H 1.09000 * 109.47418 * 30.24904 * 24 23 22 42 42 H 1.09003 * 109.47053 * 150.25220 * 24 23 22 43 43 H 1.08999 * 109.46804 * 263.47547 * 26 25 23 44 44 H 1.08993 * 109.46803 * 23.47630 * 26 25 23 45 45 H 1.08998 * 109.46939 * 143.47784 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9135 2.0967 -3.4169 10 1 5.9775 0.8753 -4.2592 11 1 6.3920 3.2639 -4.2003 12 1 6.7735 1.9179 -2.2196 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4724 16 8 2.3055 2.1960 3.5760 17 6 2.1329 1.7108 4.8208 18 8 1.7314 0.5755 4.9800 19 6 2.4329 2.5592 5.9924 20 6 3.0145 3.8167 5.8173 21 6 3.2925 4.6034 6.9155 22 6 3.0016 4.1468 8.1891 23 6 2.4202 2.9044 8.3694 24 6 2.1009 2.4185 9.7597 25 6 2.1368 2.1072 7.2797 26 6 1.5087 0.7518 7.4784 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1383 34 1 3.6751 3.5163 -4.4439 35 1 2.6213 0.4186 2.5302 36 1 0.9433 1.0124 2.5299 37 1 3.2469 4.1720 4.8242 38 1 3.7426 5.5759 6.7815 39 1 3.2255 4.7650 9.0458 40 1 2.9581 1.8782 10.1616 41 1 1.8763 3.2714 10.4001 42 1 1.2373 1.7543 9.7230 43 1 2.2858 -0.0124 7.4770 44 1 0.9814 0.7321 8.4321 45 1 0.8046 0.5556 6.6698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060828546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:15 Heat of formation + Delta-G solvation = -114.784347 kcal Electronic energy + Delta-G solvation = -26406.400500 eV Core-core repulsion = 22581.358784 eV Total energy + Delta-G solvation = -3825.041716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98317 -40.82749 -39.96622 -37.67347 -37.00244 -34.95774 -34.43689 -33.28824 -31.76647 -30.75081 -29.01276 -28.17710 -27.40880 -25.30524 -24.65103 -24.04475 -21.87848 -21.84655 -20.29213 -18.95471 -18.64621 -18.19026 -17.83515 -17.58171 -17.09487 -16.65280 -16.50078 -16.30730 -15.98881 -15.23470 -15.06480 -14.78152 -14.60526 -14.47787 -14.01796 -14.00018 -13.82078 -13.65126 -13.51419 -13.42788 -13.29730 -13.08363 -13.00908 -12.79289 -12.69512 -12.55811 -12.52080 -12.24276 -12.07556 -11.82551 -11.81180 -11.73609 -11.21932 -10.75470 -10.65539 -9.97122 -9.60188 -9.56947 -8.24590 -6.39135 -0.37621 0.31248 1.19414 1.35897 1.38934 1.39623 1.49157 1.59213 2.29930 2.42933 2.68708 3.05414 3.39311 3.51530 3.75604 3.82304 3.88854 3.94001 4.04246 4.13060 4.16992 4.33922 4.36223 4.57076 4.60549 4.69561 4.74773 4.82447 4.86894 4.89067 4.92711 4.94392 5.00892 5.04284 5.17475 5.23623 5.30563 5.34455 5.38996 5.45125 5.52440 5.59856 5.77894 5.91662 6.02531 6.49362 6.61759 6.69784 7.18719 7.34641 8.82933 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018427 B = 0.002762 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.150388 B =10134.738613 C =11073.458571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.346 6.346 17 C 0.505 3.495 18 O -0.512 6.512 19 C -0.151 4.151 20 C -0.079 4.079 21 C -0.137 4.137 22 C -0.074 4.074 23 C -0.106 4.106 24 C -0.114 4.114 25 C -0.031 4.031 26 C -0.124 4.124 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -5.120 26.308 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.013 4.013 16 O -0.262 6.262 17 C 0.352 3.648 18 O -0.403 6.403 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.155 4.155 22 C -0.091 4.091 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.031 4.031 26 C -0.180 4.180 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.607 -4.785 26.124 26.955 hybrid contribution 0.841 0.162 -1.357 1.604 sum -3.767 -4.623 24.767 25.475 Atomic orbital electron populations 1.22177 0.94283 1.03825 1.01820 1.21874 0.95595 0.80943 1.04422 1.48207 1.63563 1.15281 1.05639 1.18798 0.95638 0.91656 0.79715 1.21689 0.97789 1.32260 1.06619 0.92830 1.25850 1.02429 0.94389 0.96386 1.70043 1.37801 1.34032 1.14785 0.85407 0.78912 0.78255 0.78186 1.18703 1.20580 1.19888 1.20514 0.78359 0.86647 0.85807 1.90674 1.47144 1.20147 1.87748 1.22837 1.04731 0.91995 0.81779 1.86611 1.79159 1.45502 1.14958 1.21640 0.74114 0.85954 0.83077 1.90749 1.43562 1.19656 1.86361 1.19042 1.09403 0.96329 0.90441 1.21601 0.95007 0.92416 1.00705 1.21440 1.01089 1.00990 0.91944 1.21739 0.94344 0.95035 0.97999 1.20108 0.99774 0.94555 0.96140 1.20940 1.02908 1.02767 0.90427 1.20095 0.95327 0.97360 0.90355 1.21174 1.01159 0.91840 1.03790 0.92509 0.93646 0.88303 0.89899 0.88456 0.95155 0.98254 0.92319 0.86454 0.85973 0.85793 0.82968 0.81920 0.89911 0.89511 0.90299 0.90638 0.88930 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.33 16 2 C 0.09 2.86 5.93 86.38 0.51 3.38 16 3 N -0.59 -25.65 2.46 -826.16 -2.03 -27.68 16 4 C 0.26 14.28 5.16 85.63 0.44 14.72 16 5 C -0.55 -31.65 9.39 25.60 0.24 -31.41 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.50 5.46 84.66 0.46 0.96 16 8 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 9 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.50 21.99 7.75 87.66 0.68 22.67 16 14 O -0.58 -31.61 16.08 15.76 0.25 -31.36 16 15 C 0.06 2.08 4.51 71.24 0.32 2.40 16 16 O -0.35 -12.33 9.03 -49.81 -0.45 -12.78 16 17 C 0.51 15.70 7.83 70.33 0.55 16.25 16 18 O -0.51 -15.82 13.13 19.94 0.26 -15.56 16 19 C -0.15 -4.06 5.87 -20.10 -0.12 -4.18 16 20 C -0.08 -1.99 9.62 22.54 0.22 -1.77 16 21 C -0.14 -2.49 10.03 22.23 0.22 -2.27 16 22 C -0.07 -1.05 9.69 22.33 0.22 -0.83 16 23 C -0.11 -1.68 5.87 -19.91 -0.12 -1.80 16 24 C -0.11 -1.01 9.59 71.23 0.68 -0.33 16 25 C -0.03 -0.67 5.91 -19.60 -0.12 -0.78 16 26 C -0.12 -2.35 8.42 71.24 0.60 -1.75 16 27 H 0.06 1.35 7.22 -2.38 -0.02 1.33 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 31 H 0.10 2.35 6.44 -2.38 -0.02 2.34 16 32 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 33 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.12 3.34 7.40 -2.39 -0.02 3.33 16 36 H 0.12 3.33 7.18 -2.39 -0.02 3.32 16 37 H 0.12 3.52 7.63 -2.91 -0.02 3.50 16 38 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.09 0.47 8.09 -2.39 -0.02 0.45 16 42 H 0.08 0.63 5.88 -2.39 -0.01 0.61 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.20 5.71 -2.39 -0.01 1.18 16 45 H 0.07 1.70 5.85 -2.39 -0.01 1.69 16 Total: -1.00 -78.24 375.87 6.88 -71.36 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.00 Total: 12.83 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.53 Total: 11.92 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.74 Total: -83.65 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: 0.07 Total: -59.69 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -78.24 6.88 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060828546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.424 kcal (2) G-P(sol) polarization free energy of solvation -78.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds