Wall clock time and date at job start Tue Mar 31 2020 12:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47197 * 2 1 4 4 C 1.46491 * 120.00110 * 270.00434 * 3 2 1 5 5 C 1.50697 * 109.47300 * 269.99905 * 4 3 2 6 6 H 1.07999 * 119.99717 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00327 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99609 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00106 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47479 * 89.99599 * 9 7 5 11 11 H 1.48501 * 109.47281 * 209.99908 * 9 7 5 12 12 H 1.48510 * 109.46874 * 329.99680 * 9 7 5 13 13 C 1.34776 * 119.99532 * 89.99926 * 3 2 1 14 14 O 1.21283 * 119.99965 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00139 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47000 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00084 * 179.97438 * 16 15 13 18 18 O 1.20828 * 120.00186 * 0.02562 * 17 16 15 19 19 C 1.50709 * 120.00280 * 180.02562 * 17 16 15 20 20 C 1.50693 * 109.47444 * 180.02562 * 19 17 16 21 21 C 1.38233 * 120.00207 * 89.99457 * 20 19 17 22 22 C 1.38234 * 120.00037 * 179.72405 * 21 20 19 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.50700 * 120.00260 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99693 * 0.02562 * 23 22 21 26 26 C 1.38234 * 120.00047 * 359.95697 * 25 23 22 27 27 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46813 * 299.99611 * 1 2 3 29 29 H 1.08995 * 109.47547 * 59.99833 * 1 2 3 30 30 H 1.09000 * 109.46813 * 240.00389 * 2 1 3 31 31 H 1.08995 * 109.47547 * 120.00167 * 2 1 3 32 32 H 1.09003 * 109.47498 * 30.00077 * 4 3 2 33 33 H 1.08997 * 109.47005 * 149.99594 * 4 3 2 34 34 H 0.97001 * 119.99712 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47290 * 60.00137 * 15 13 3 36 36 H 1.09003 * 109.47227 * 299.99522 * 15 13 3 37 37 H 1.09000 * 109.46880 * 60.00057 * 19 17 16 38 38 H 1.09001 * 109.46663 * 299.99941 * 19 17 16 39 39 H 1.08002 * 120.00157 * 0.02562 * 21 20 19 40 40 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 41 41 H 1.09000 * 109.46827 * 89.99810 * 24 23 22 42 42 H 1.08999 * 109.47240 * 210.00239 * 24 23 22 43 43 H 1.08999 * 109.46861 * 329.99859 * 24 23 22 44 44 H 1.08001 * 119.99658 * 179.97438 * 25 23 22 45 45 H 1.07999 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1493 2.3907 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9132 2.0966 -3.4172 10 1 5.9759 0.8761 -4.2608 11 1 6.3928 3.2642 -4.1995 12 1 6.7734 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1952 3.5760 17 6 2.1362 1.7115 4.8163 18 8 1.7370 0.5822 4.9746 19 6 2.4422 2.5770 6.0115 20 6 2.1692 1.8030 7.2753 21 6 3.1728 1.0493 7.8547 22 6 2.9239 0.3439 9.0171 23 6 1.6700 0.3877 9.5973 24 6 1.3986 -0.3818 10.8643 25 6 0.6647 1.1366 9.0147 26 6 0.9136 1.8424 7.8524 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0954 3.1411 -1.1382 34 1 3.6752 3.5173 -4.4434 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0114 2.5302 37 1 1.8126 3.4665 5.9866 38 1 3.4909 2.8732 5.9867 39 1 4.1526 1.0155 7.4018 40 1 3.7093 -0.2413 9.4722 41 1 1.6192 0.2479 11.7261 42 1 0.3505 -0.6800 10.8908 43 1 2.0298 -1.2700 10.8921 44 1 -0.3151 1.1706 9.4677 45 1 0.1284 2.4278 7.3975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060902231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:30 Heat of formation + Delta-G solvation = -103.791381 kcal Electronic energy + Delta-G solvation = -25832.045872 eV Core-core repulsion = 22007.480847 eV Total energy + Delta-G solvation = -3824.565025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70852 -39.55732 -38.85310 -36.40318 -35.30623 -34.12751 -32.85099 -31.16629 -30.47620 -30.15920 -28.96362 -26.68349 -25.64048 -23.09836 -22.98405 -22.72254 -21.66324 -20.52902 -18.68133 -17.82002 -16.90805 -16.74026 -16.42560 -16.10863 -15.85420 -15.66580 -15.34001 -15.10144 -14.54032 -14.23679 -13.99942 -13.67177 -13.48957 -13.42870 -13.12614 -13.02477 -12.70671 -12.53359 -12.24206 -12.09595 -12.06601 -11.99899 -11.63335 -11.41539 -11.24206 -11.19753 -10.95019 -10.88188 -10.62512 -10.56692 -10.51079 -10.15628 -9.67131 -9.13573 -9.01059 -8.78239 -8.45770 -7.76259 -6.06771 -4.11586 1.00208 1.19491 2.16729 2.51937 3.24432 3.29302 3.36126 3.41005 3.52362 3.92469 4.33019 4.42862 4.51215 4.64801 4.76918 4.83738 4.84167 4.88232 5.16439 5.16914 5.19349 5.22494 5.26414 5.27890 5.28741 5.36675 5.46707 5.50103 5.57956 5.72450 5.82784 5.82930 5.99048 6.14877 6.18230 6.32670 6.34640 6.38459 6.44017 6.76624 6.98889 7.38698 7.46374 7.72274 7.89402 8.19448 8.28900 8.83667 8.98508 9.53382 11.01364 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.002280 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.329108 B =12278.472423 C =12758.588295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.330 6.330 17 C 0.460 3.540 18 O -0.504 6.504 19 C -0.073 4.073 20 C -0.080 4.080 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -6.606 24.655 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.245 6.245 17 C 0.303 3.697 18 O -0.392 6.392 19 C -0.111 4.111 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.138 4.138 23 C -0.086 4.086 24 C -0.171 4.171 25 C -0.139 4.139 26 C -0.116 4.116 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.703 -6.219 24.465 25.879 hybrid contribution 0.882 -0.420 -0.568 1.130 sum -4.821 -6.639 23.897 25.267 Atomic orbital electron populations 1.22231 0.96535 1.01692 1.02403 1.21508 0.93756 0.83961 1.03017 1.48211 1.63821 1.13399 1.07150 1.19329 0.96476 0.93713 0.77574 1.21424 0.96846 1.32054 1.06360 0.92403 1.24941 0.97948 0.94859 0.96382 1.69931 1.35720 1.33312 1.14311 0.86477 0.84560 0.77680 0.78592 1.20631 1.21059 1.19883 1.19723 0.79702 0.87155 0.84312 1.90714 1.44518 1.17504 1.86754 1.22955 1.02651 0.92655 0.84453 1.86563 1.78564 1.45006 1.14350 1.23643 0.74550 0.87038 0.84492 1.90679 1.41983 1.19888 1.86651 1.20300 1.06018 0.97796 0.86949 1.19271 0.94512 0.98977 0.95300 1.21016 0.98973 0.95966 0.95606 1.20984 0.96567 1.00148 0.96146 1.19953 0.93820 0.97717 0.97086 1.20797 1.02396 0.99354 0.94576 1.20980 0.98936 0.97803 0.96150 1.21003 0.95858 0.99078 0.95633 0.91902 0.93147 0.91779 0.89417 0.91768 0.94634 0.93699 0.92671 0.88748 0.88809 0.86500 0.86473 0.85923 0.85993 0.91184 0.91537 0.91532 0.86004 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.45 2.46 -175.07 -0.43 -12.88 16 4 C 0.25 6.40 5.16 -5.20 -0.03 6.38 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.77 7.75 -10.99 -0.09 10.68 16 14 O -0.52 -13.40 16.08 -14.11 -0.23 -13.63 16 15 C 0.05 0.83 4.50 36.01 0.16 0.99 16 16 O -0.33 -5.45 9.75 -45.88 -0.45 -5.90 16 17 C 0.46 6.41 7.95 36.01 0.29 6.69 16 18 O -0.50 -8.01 15.78 -18.75 -0.30 -8.31 16 19 C -0.07 -0.73 5.94 -29.03 -0.17 -0.90 16 20 C -0.08 -0.83 4.37 -104.63 -0.46 -1.29 16 21 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 22 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 23 C -0.09 -0.75 5.88 -104.62 -0.62 -1.37 16 24 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 25 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 26 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 1.42 7.39 -51.93 -0.38 1.03 16 36 H 0.09 1.35 7.18 -51.93 -0.37 0.98 16 37 H 0.12 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.12 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 43 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -35.23 386.53 -8.88 -44.11 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.87 Total: -1.69 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.15 Total: 1.34 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.31 Total: -38.54 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.97 Total: -27.83 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.23 -8.88 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060902231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.682 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds