Wall clock time and date at job start Tue Mar 31 2020 12:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47197 * 2 1 4 4 C 1.46491 * 120.00110 * 270.00434 * 3 2 1 5 5 C 1.50697 * 109.47300 * 269.99905 * 4 3 2 6 6 H 1.07999 * 119.99717 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00327 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99609 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00106 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47479 * 89.99599 * 9 7 5 11 11 H 1.48501 * 109.47281 * 209.99908 * 9 7 5 12 12 H 1.48510 * 109.46874 * 329.99680 * 9 7 5 13 13 C 1.34776 * 119.99532 * 89.99926 * 3 2 1 14 14 O 1.21283 * 119.99965 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00139 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47000 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00084 * 179.97438 * 16 15 13 18 18 O 1.20828 * 120.00186 * 0.02562 * 17 16 15 19 19 C 1.50709 * 120.00280 * 180.02562 * 17 16 15 20 20 C 1.50693 * 109.47444 * 180.02562 * 19 17 16 21 21 C 1.38233 * 120.00207 * 89.99457 * 20 19 17 22 22 C 1.38234 * 120.00037 * 179.72405 * 21 20 19 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.50700 * 120.00260 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99693 * 0.02562 * 23 22 21 26 26 C 1.38234 * 120.00047 * 359.95697 * 25 23 22 27 27 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46813 * 299.99611 * 1 2 3 29 29 H 1.08995 * 109.47547 * 59.99833 * 1 2 3 30 30 H 1.09000 * 109.46813 * 240.00389 * 2 1 3 31 31 H 1.08995 * 109.47547 * 120.00167 * 2 1 3 32 32 H 1.09003 * 109.47498 * 30.00077 * 4 3 2 33 33 H 1.08997 * 109.47005 * 149.99594 * 4 3 2 34 34 H 0.97001 * 119.99712 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47290 * 60.00137 * 15 13 3 36 36 H 1.09003 * 109.47227 * 299.99522 * 15 13 3 37 37 H 1.09000 * 109.46880 * 60.00057 * 19 17 16 38 38 H 1.09001 * 109.46663 * 299.99941 * 19 17 16 39 39 H 1.08002 * 120.00157 * 0.02562 * 21 20 19 40 40 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 41 41 H 1.09000 * 109.46827 * 89.99810 * 24 23 22 42 42 H 1.08999 * 109.47240 * 210.00239 * 24 23 22 43 43 H 1.08999 * 109.46861 * 329.99859 * 24 23 22 44 44 H 1.08001 * 119.99658 * 179.97438 * 25 23 22 45 45 H 1.07999 * 119.99990 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1493 2.3907 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9132 2.0966 -3.4172 10 1 5.9759 0.8761 -4.2608 11 1 6.3928 3.2642 -4.1995 12 1 6.7734 1.9156 -2.2202 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1952 3.5760 17 6 2.1362 1.7115 4.8163 18 8 1.7370 0.5822 4.9746 19 6 2.4422 2.5770 6.0115 20 6 2.1692 1.8030 7.2753 21 6 3.1728 1.0493 7.8547 22 6 2.9239 0.3439 9.0171 23 6 1.6700 0.3877 9.5973 24 6 1.3986 -0.3818 10.8643 25 6 0.6647 1.1366 9.0147 26 6 0.9136 1.8424 7.8524 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0954 3.1411 -1.1382 34 1 3.6752 3.5173 -4.4434 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0114 2.5302 37 1 1.8126 3.4665 5.9866 38 1 3.4909 2.8732 5.9867 39 1 4.1526 1.0155 7.4018 40 1 3.7093 -0.2413 9.4722 41 1 1.6192 0.2479 11.7261 42 1 0.3505 -0.6800 10.8908 43 1 2.0298 -1.2700 10.8921 44 1 -0.3151 1.1706 9.4677 45 1 0.1284 2.4278 7.3975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060902231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:30 Heat of formation + Delta-G solvation = -122.742862 kcal Electronic energy + Delta-G solvation = -25832.867670 eV Core-core repulsion = 22007.480847 eV Total energy + Delta-G solvation = -3825.386823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84985 -40.70866 -40.05885 -37.63577 -36.97918 -34.95077 -34.82840 -31.82513 -31.80247 -31.27986 -30.28735 -28.39871 -26.47314 -24.88168 -24.17161 -23.64807 -22.64088 -21.37619 -20.27692 -18.99649 -18.65024 -18.11628 -17.88815 -17.40292 -17.06211 -16.62977 -16.53294 -16.10098 -15.94241 -15.78044 -14.86887 -14.76348 -14.59184 -14.47526 -14.30019 -14.02130 -13.86124 -13.68064 -13.60610 -13.33848 -13.27567 -13.08183 -12.76047 -12.75957 -12.68990 -12.51468 -12.23422 -12.06386 -12.05183 -11.82913 -11.79996 -11.72370 -11.68849 -10.74287 -10.64787 -9.81618 -9.55694 -9.45982 -8.23799 -6.38226 0.29007 0.51459 1.09629 1.34215 1.37333 1.39791 1.50030 1.60970 2.32098 2.44638 2.87423 3.06170 3.42190 3.56637 3.76306 3.86951 3.96181 4.00307 4.09408 4.13883 4.14144 4.22831 4.36538 4.52405 4.57286 4.61194 4.61776 4.85304 4.85927 4.86903 4.93089 4.95912 5.01724 5.17961 5.19094 5.24599 5.33344 5.34682 5.48449 5.53426 5.63139 5.70794 5.78871 6.03492 6.11947 6.54050 6.66392 6.70875 7.20285 7.35804 8.83596 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.002280 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.329108 B =12278.472423 C =12758.588295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.350 6.350 17 C 0.463 3.537 18 O -0.524 6.524 19 C -0.068 4.068 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.093 4.093 24 C -0.113 4.113 25 C -0.131 4.131 26 C -0.111 4.111 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.140 0.860 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 -8.419 26.372 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.014 4.014 16 O -0.265 6.265 17 C 0.308 3.692 18 O -0.413 6.413 19 C -0.105 4.105 20 C -0.097 4.097 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.093 4.093 24 C -0.170 4.170 25 C -0.149 4.149 26 C -0.129 4.129 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.157 0.843 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.535 -8.086 26.199 27.972 hybrid contribution 0.767 0.123 -1.038 1.296 sum -4.768 -7.963 25.161 26.818 Atomic orbital electron populations 1.22172 0.94321 1.03766 1.01844 1.21857 0.95564 0.81018 1.04342 1.48211 1.63592 1.15231 1.05726 1.18793 0.95605 0.91684 0.79749 1.21692 0.97794 1.32190 1.06642 0.92785 1.25863 1.02455 0.94433 0.96433 1.70047 1.37765 1.34034 1.14765 0.85399 0.78909 0.78208 0.78187 1.18779 1.20622 1.19835 1.20559 0.78319 0.86660 0.85848 1.90676 1.47125 1.20128 1.87759 1.22782 1.04517 0.92043 0.82065 1.86578 1.79074 1.45631 1.15263 1.24358 0.73534 0.87209 0.84149 1.90662 1.43081 1.20923 1.86645 1.20436 1.07455 0.97637 0.84969 1.19383 0.95022 0.99754 0.95580 1.21254 0.99412 0.96212 0.96174 1.21274 0.97368 1.00244 0.96076 1.20330 0.93618 0.97487 0.97864 1.20843 1.03058 0.99456 0.93621 1.21283 0.99944 0.97608 0.96056 1.21255 0.96037 0.99465 0.96135 0.88429 0.92465 0.93620 0.89973 0.88543 0.95241 0.98187 0.92350 0.86767 0.86258 0.84567 0.84797 0.85204 0.84386 0.90078 0.90788 0.90873 0.84258 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.30 16 2 C 0.09 2.85 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.33 2.46 -826.17 -2.03 -27.36 16 4 C 0.26 14.14 5.16 85.63 0.44 14.58 16 5 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 9 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.50 21.47 7.75 87.66 0.68 22.15 16 14 O -0.58 -30.97 16.08 15.76 0.25 -30.72 16 15 C 0.06 1.98 4.50 71.24 0.32 2.30 16 16 O -0.35 -11.26 9.75 -44.99 -0.44 -11.70 16 17 C 0.46 12.28 7.95 71.24 0.57 12.85 16 18 O -0.52 -15.82 15.78 21.96 0.35 -15.47 16 19 C -0.07 -1.26 5.94 29.10 0.17 -1.09 16 20 C -0.10 -1.90 4.37 -19.87 -0.09 -1.98 16 21 C -0.11 -2.11 9.70 22.27 0.22 -1.89 16 22 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 23 C -0.09 -1.47 5.88 -19.86 -0.12 -1.59 16 24 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 25 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 26 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 31 H 0.10 2.32 6.44 -2.39 -0.02 2.30 16 32 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.11 3.16 7.39 -2.39 -0.02 3.14 16 36 H 0.12 3.15 7.18 -2.39 -0.02 3.13 16 37 H 0.14 1.97 8.09 -2.39 -0.02 1.95 16 38 H 0.13 2.01 8.08 -2.39 -0.02 1.99 16 39 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 43 H 0.07 0.63 8.09 -2.39 -0.02 0.62 16 44 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -78.82 386.53 6.92 -71.90 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.97 Total: 13.05 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.51 Total: 8.98 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.74 Total: -82.98 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: 0.16 Total: -57.89 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -78.82 6.92 -71.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060902231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.843 kcal (2) G-P(sol) polarization free energy of solvation -78.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds