Wall clock time and date at job start Tue Mar 31 2020 12:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 119.99946 * 2 1 4 4 C 1.52998 * 109.47115 * 125.00001 * 3 2 1 5 5 O 1.42899 * 109.46977 * 179.97438 * 4 3 2 6 6 C 1.42905 * 114.00118 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.46808 * 329.99703 * 6 5 4 8 8 C 1.53003 * 109.47045 * 89.99955 * 6 5 4 9 9 C 1.50696 * 109.47019 * 209.99711 * 6 5 4 10 10 O 1.21280 * 120.00397 * 355.00338 * 9 6 5 11 11 N 1.34783 * 119.99624 * 174.99624 * 9 6 5 12 12 C 1.46500 * 119.99538 * 180.02562 * 11 9 6 13 13 C 1.50703 * 109.46803 * 179.97438 * 12 11 9 14 14 C 1.38299 * 119.93457 * 269.72786 * 13 12 11 15 15 C 1.38096 * 120.06741 * 179.72317 * 14 13 12 16 16 C 1.38876 * 119.93230 * 0.57305 * 15 14 13 17 17 O 1.35755 * 120.07226 * 179.67830 * 16 15 14 18 18 C 1.34824 * 117.00239 * 174.48178 * 17 16 15 19 19 H 1.08000 * 120.00045 * 5.06972 * 18 17 16 20 20 C 1.38654 * 120.00146 * 185.05378 * 18 17 16 21 21 N 1.31559 * 119.99787 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00021 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46695 * 90.00860 * 22 20 18 24 24 H 1.48501 * 109.46953 * 210.00653 * 22 20 18 25 25 H 1.48501 * 109.47158 * 330.00713 * 22 20 18 26 26 C 1.38877 * 119.86381 * 359.69922 * 16 15 14 27 27 C 1.38109 * 119.92826 * 0.02562 * 26 16 15 28 28 H 1.08003 * 120.00291 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00445 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.00316 * 179.97438 * 2 1 3 31 31 H 1.08992 * 109.47011 * 4.99461 * 3 2 1 32 32 H 1.09008 * 109.47031 * 245.00044 * 3 2 1 33 33 H 1.09004 * 109.47170 * 59.99917 * 4 3 2 34 34 H 1.08995 * 109.47340 * 299.99833 * 4 3 2 35 35 H 1.08991 * 109.47029 * 60.00185 * 8 6 5 36 36 H 1.09004 * 109.46981 * 180.02562 * 8 6 5 37 37 H 1.09004 * 109.46936 * 299.99987 * 8 6 5 38 38 H 0.96993 * 119.99778 * 0.02562 * 11 9 6 39 39 H 1.09001 * 109.47507 * 299.99962 * 12 11 9 40 40 H 1.08999 * 109.47241 * 60.00375 * 12 11 9 41 41 H 1.07997 * 119.96128 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.03658 * 180.27295 * 15 14 13 43 43 H 0.97001 * 119.99564 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03701 * 179.97438 * 26 16 15 45 45 H 1.07994 * 119.96032 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 8 3.7498 2.5704 1.1812 6 6 4.6894 2.6992 2.2503 7 1 4.3371 2.1348 3.1135 8 6 6.0475 2.1539 1.8040 9 6 4.8296 4.1525 2.6234 10 8 4.2587 5.0031 1.9743 11 7 5.5895 4.5070 3.6787 12 6 5.7253 5.9197 4.0418 13 6 6.6203 6.0445 5.2479 14 6 6.0745 6.0146 6.5183 15 6 6.8927 6.1230 7.6255 16 6 8.2635 6.2741 7.4621 17 8 9.0696 6.3875 8.5484 18 6 10.3988 6.4165 8.3240 19 1 10.7753 6.4332 7.3119 20 6 11.2822 6.4250 9.3926 21 7 10.8236 6.4043 10.6255 22 14 13.1238 6.4658 9.0817 23 1 13.5828 7.8763 9.0122 24 1 13.8282 5.7699 10.1884 25 1 13.4242 5.7836 7.7973 26 6 8.8079 6.3095 6.1849 27 6 7.9850 6.1949 5.0817 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8499 -0.9352 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9315 33 1 3.7399 0.5066 1.0921 34 1 2.4772 1.2357 2.1130 35 1 6.3998 2.7184 0.9408 36 1 6.7641 2.2518 2.6196 37 1 5.9461 1.1027 1.5341 38 1 6.0463 3.8267 4.1976 39 1 6.1610 6.4692 3.2072 40 1 4.7432 6.3311 4.2745 41 1 5.0079 5.9023 6.6445 42 1 6.4664 6.0951 8.6174 43 1 11.4417 6.4099 11.3730 44 1 9.8735 6.4274 6.0546 45 1 8.4078 6.2228 4.0883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067927014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:39 Heat of formation + Delta-G solvation = -74.546307 kcal Electronic energy + Delta-G solvation = -25086.434574 eV Core-core repulsion = 21263.137710 eV Total energy + Delta-G solvation = -3823.296864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.06913 -39.14880 -38.09005 -36.84662 -35.42231 -34.46301 -32.46552 -31.98216 -30.31552 -29.83896 -29.20914 -26.12279 -25.16585 -24.03553 -23.08935 -22.08625 -20.68917 -20.56061 -20.06675 -18.11469 -17.62148 -17.22641 -16.93244 -16.33737 -15.66334 -15.33441 -15.15503 -14.75441 -14.58187 -14.41684 -14.04159 -13.89107 -13.72872 -13.61329 -13.38971 -13.02065 -12.82623 -12.78277 -12.59030 -12.18202 -12.04507 -11.86776 -11.69806 -11.51887 -11.43825 -11.32152 -10.99059 -10.83105 -10.71961 -10.51437 -10.14979 -9.79597 -9.58094 -9.45655 -9.00074 -8.93363 -8.31963 -7.35965 -6.55629 -4.14600 1.81404 2.01368 2.09742 2.59903 2.88989 3.07095 3.07665 3.12420 3.73171 3.88099 4.42627 4.51997 4.56737 4.66160 4.70665 4.73870 4.88434 4.95755 4.99188 5.05087 5.13196 5.20787 5.29180 5.39141 5.39818 5.45988 5.56253 5.63154 5.67310 5.77456 5.81274 5.90084 6.09144 6.20255 6.31687 6.32883 6.45249 6.56817 6.76973 6.81106 6.92724 7.10966 7.24015 7.32154 7.55465 7.68528 7.88957 8.22808 8.89679 9.57551 10.61784 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.001863 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.942029 B =15028.034252 C =15269.097549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.071 3.929 7 H 0.085 0.915 8 C -0.171 4.171 9 C 0.510 3.490 10 O -0.527 6.527 11 N -0.720 5.720 12 C 0.180 3.820 13 C -0.215 4.215 14 C -0.054 4.054 15 C -0.195 4.195 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.401 0.599 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -11.820 -16.263 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.010 3.990 7 H 0.103 0.897 8 C -0.228 4.228 9 C 0.295 3.705 10 O -0.402 6.402 11 N -0.373 5.373 12 C 0.058 3.942 13 C -0.217 4.217 14 C -0.073 4.073 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.236 0.764 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.146 0.854 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.671 -11.016 -16.383 23.458 hybrid contribution 1.272 -0.558 0.351 1.433 sum -11.398 -11.574 -16.032 22.823 Atomic orbital electron populations 1.23924 0.95919 1.02115 1.00461 1.22800 0.96031 0.97963 1.00488 1.20640 0.97979 0.95945 0.98461 1.22539 0.93853 0.86327 0.98584 1.88029 1.54257 1.37344 1.47986 1.21902 0.91353 0.94278 0.91479 0.89675 1.22235 0.95425 1.01910 1.03265 1.20363 0.79258 0.90319 0.80592 1.90709 1.45957 1.51938 1.51597 1.46290 1.50232 1.09851 1.30938 1.19988 0.98600 0.80696 0.94872 1.19200 0.93822 1.15276 0.93383 1.20534 0.98223 0.97190 0.91365 1.20216 0.91143 1.11219 0.98878 1.19443 0.90997 0.91601 0.87396 1.83977 1.18034 1.77479 1.28063 1.21358 0.77969 1.53001 0.94674 0.88902 1.25322 1.00464 0.96321 0.94334 1.70038 1.35773 1.45340 0.98134 0.85693 0.80316 0.78826 0.78503 1.19776 1.20174 1.19136 1.21163 1.00719 1.11686 0.92055 1.20648 0.92472 0.96248 0.97543 0.88289 0.88353 0.87182 0.90430 0.89987 0.93014 0.93048 0.91034 0.90644 0.91318 0.76406 0.91489 0.91483 0.86946 0.86363 0.91861 0.85401 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 14.32 29.02 0.42 -0.71 16 2 C -0.15 -0.99 9.52 -36.02 -0.34 -1.33 16 3 C -0.09 -0.72 6.03 -27.88 -0.17 -0.89 16 4 C 0.06 0.53 5.73 37.16 0.21 0.74 16 5 O -0.36 -4.21 9.53 -55.09 -0.52 -4.73 16 6 C 0.07 0.73 3.13 -27.88 -0.09 0.64 16 7 H 0.09 0.67 7.79 -51.93 -0.40 0.27 16 8 C -0.17 -1.40 9.48 37.16 0.35 -1.04 16 9 C 0.51 6.84 7.18 -10.98 -0.08 6.76 16 10 O -0.53 -9.34 16.51 -14.30 -0.24 -9.58 16 11 N -0.72 -8.72 5.51 -61.47 -0.34 -9.06 16 12 C 0.18 2.48 5.80 -5.19 -0.03 2.45 16 13 C -0.22 -3.36 5.25 -104.57 -0.55 -3.91 16 14 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 15 C -0.20 -3.85 9.99 -39.40 -0.39 -4.25 16 16 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 17 O -0.17 -4.74 9.76 0.05 0.00 -4.74 16 18 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 19 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.40 13.67 55.48 0.76 -23.64 16 22 Si 0.94 19.79 29.55 -169.99 -5.02 14.76 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 26 C -0.24 -4.81 9.17 -39.39 -0.36 -5.17 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 28 H 0.10 0.47 8.06 -52.48 -0.42 0.05 16 29 H 0.10 0.58 7.84 -52.48 -0.41 0.17 16 30 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.05 0.34 7.87 -51.93 -0.41 -0.06 16 34 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 37 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 38 H 0.40 4.14 8.25 -40.82 -0.34 3.80 16 39 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -32.15 387.75 -8.09 -40.25 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.71 Total: 6.01 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.86 Total: -15.11 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.42 Total: -32.70 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.76 Total: -19.05 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.15 -8.09 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.301 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds