Wall clock time and date at job start Tue Mar 31 2020 12:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00264 * 2 1 4 4 C 1.38760 * 120.05251 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93881 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05921 * 0.02562 * 5 4 3 7 7 C 1.38235 * 120.11015 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.97196 * 180.02562 * 7 6 5 9 9 O 1.42895 * 109.47437 * 270.00464 * 8 7 6 10 10 C 1.42900 * 114.00250 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47192 * 330.00070 * 10 9 8 12 12 C 1.53001 * 109.46972 * 90.00146 * 10 9 8 13 13 C 1.50708 * 109.47286 * 209.99848 * 10 9 8 14 14 O 1.21284 * 119.99519 * 0.02562 * 13 10 9 15 15 N 1.34771 * 119.99774 * 180.02562 * 13 10 9 16 16 C 1.37102 * 119.99933 * 180.02562 * 15 13 10 17 17 H 1.07990 * 120.00147 * 222.94515 * 16 15 13 18 18 C 1.38953 * 119.99796 * 42.94501 * 16 15 13 19 19 N 1.31410 * 119.99983 * 18.91774 * 18 16 15 20 20 Si 1.86797 * 119.99839 * 198.92461 * 18 16 15 21 21 H 1.48502 * 109.47458 * 59.99989 * 20 18 16 22 22 H 1.48502 * 109.47132 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47349 * 299.99591 * 20 18 16 24 24 C 1.46504 * 120.00427 * 359.97438 * 15 13 10 25 25 C 1.52995 * 117.49925 * 187.63078 * 24 15 13 26 26 C 1.52997 * 117.49874 * 118.97141 * 24 15 13 27 27 C 1.38166 * 120.05929 * 0.02562 * 7 6 5 28 28 H 1.08992 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46979 * 300.00517 * 1 2 3 30 30 H 1.09002 * 109.47295 * 59.99918 * 1 2 3 31 31 H 1.07995 * 120.03018 * 359.96330 * 4 3 2 32 32 H 1.08006 * 119.96789 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.94381 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47245 * 30.00821 * 8 7 6 35 35 H 1.09000 * 109.47485 * 150.00525 * 8 7 6 36 36 H 1.09000 * 109.47224 * 59.99943 * 12 10 9 37 37 H 1.09004 * 109.47181 * 180.02562 * 12 10 9 38 38 H 1.09005 * 109.47108 * 300.00156 * 12 10 9 39 39 H 0.97001 * 119.99781 * 174.91394 * 19 18 16 40 40 H 1.08996 * 115.54679 * 333.30418 * 24 15 13 41 41 H 1.08997 * 117.50432 * 0.02562 * 25 24 15 42 42 H 1.09007 * 117.49800 * 145.02316 * 25 24 15 43 43 H 1.09002 * 117.50174 * 214.98447 * 26 24 15 44 44 H 1.09006 * 117.49922 * 359.97425 * 26 24 15 45 45 H 1.08004 * 120.02986 * 180.27036 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5981 0.0000 9 8 6.0365 2.6244 -1.3472 10 6 7.4589 2.7016 -1.4600 11 1 7.8629 3.2378 -0.6013 12 6 8.0447 1.2888 -1.5009 13 6 7.8235 3.4333 -2.7261 14 8 6.9510 3.8483 -3.4593 15 7 9.1190 3.6265 -3.0435 16 6 9.4507 4.2927 -4.1950 17 1 10.2500 3.9242 -4.8207 18 6 8.7584 5.4418 -4.5568 19 7 8.0627 6.1004 -3.6573 20 14 8.8166 6.0504 -6.3219 21 1 8.2720 5.0044 -7.2244 22 1 8.0008 7.2850 -6.4470 23 1 10.2226 6.3454 -6.6977 24 6 10.1729 3.1258 -2.1575 25 6 11.6140 3.5287 -2.4759 26 6 11.1461 2.0937 -2.7304 27 6 3.4311 1.2848 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2129 2.3204 0.0004 32 1 1.3340 4.5114 0.0019 33 1 3.7923 4.6380 0.0014 34 1 5.8758 3.5060 0.5144 35 1 5.9715 1.7287 0.5133 36 1 7.6407 0.7526 -2.3596 37 1 9.1298 1.3476 -1.5865 38 1 7.7810 0.7595 -0.5851 39 1 7.6402 6.9416 -3.8914 40 1 9.8975 3.0293 -1.1073 41 1 11.7782 4.1667 -3.3443 42 1 12.2871 3.6969 -1.6351 43 1 11.5115 1.3183 -2.0570 44 1 11.0021 1.7869 -3.7664 45 1 4.0207 0.3798 0.0035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:54 Heat of formation + Delta-G solvation = -62.863513 kcal Electronic energy + Delta-G solvation = -26919.157435 eV Core-core repulsion = 23096.367175 eV Total energy + Delta-G solvation = -3822.790260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16977 -40.73885 -39.14436 -38.12876 -37.48000 -34.75400 -33.52056 -32.74817 -31.70673 -31.17864 -28.25060 -27.15349 -26.94521 -24.71255 -23.54629 -23.13015 -22.58977 -22.15652 -21.25534 -19.05083 -18.28140 -17.84368 -17.69984 -17.30399 -17.02954 -16.65311 -16.61048 -16.05705 -16.05111 -15.56741 -15.34698 -14.94753 -14.68819 -14.41858 -14.32272 -13.99401 -13.73855 -13.45577 -13.21456 -13.11646 -12.86302 -12.79793 -12.75796 -12.65573 -12.41244 -12.22885 -12.15497 -12.06950 -11.97306 -11.73359 -11.50913 -11.19462 -10.80484 -10.57641 -9.97643 -9.76139 -9.21191 -8.95267 -8.19814 -5.96763 0.19715 0.43303 1.34419 1.44617 1.47250 2.20494 2.28867 2.36990 2.50958 2.90104 3.13326 3.35191 3.40198 3.79900 3.82103 3.95509 4.05051 4.05390 4.17370 4.20920 4.27904 4.28648 4.32248 4.35127 4.39950 4.41753 4.47155 4.54074 4.72393 4.73451 4.82518 4.90560 4.93740 5.01250 5.06673 5.25157 5.28890 5.32602 5.40752 5.48615 5.52817 5.59874 5.72611 6.14243 6.28725 6.42612 7.03107 7.25125 7.68865 8.37521 8.88900 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.003234 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.832427 B = 8655.016921 C = 9688.188254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.202 4.202 5 C -0.085 4.085 6 C -0.153 4.153 7 C -0.061 4.061 8 C 0.096 3.904 9 O -0.383 6.383 10 C 0.083 3.917 11 H 0.085 0.915 12 C -0.164 4.164 13 C 0.465 3.535 14 O -0.578 6.578 15 N -0.439 5.439 16 C -0.356 4.356 17 H 0.081 0.919 18 C 0.019 3.981 19 N -0.870 5.870 20 Si 0.969 3.031 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.252 1.252 24 C 0.043 3.957 25 C -0.173 4.173 26 C -0.178 4.178 27 C -0.146 4.146 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.258 0.742 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 -10.600 13.100 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.221 4.221 5 C -0.103 4.103 6 C -0.172 4.172 7 C -0.061 4.061 8 C 0.020 3.980 9 O -0.302 6.302 10 C 0.022 3.978 11 H 0.102 0.898 12 C -0.221 4.221 13 C 0.253 3.747 14 O -0.459 6.459 15 N -0.161 5.161 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.187 4.187 19 N -0.505 5.505 20 Si 0.794 3.206 21 H -0.210 1.210 22 H -0.214 1.214 23 H -0.177 1.177 24 C -0.062 4.062 25 C -0.211 4.211 26 C -0.217 4.217 27 C -0.165 4.165 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.147 0.853 41 H 0.098 0.902 42 H 0.137 0.863 43 H 0.148 0.852 44 H 0.092 0.908 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.056 -10.456 12.587 18.239 hybrid contribution -0.196 1.005 -0.930 1.383 sum -8.252 -9.451 11.657 17.126 Atomic orbital electron populations 1.23366 0.76326 1.05666 1.02318 1.86043 1.23605 1.26492 1.88763 1.19089 0.92151 0.85105 0.96947 1.21555 1.01352 0.91645 1.07518 1.21236 0.93859 0.98445 0.96749 1.21216 0.94975 0.98097 1.02880 1.19492 0.94526 0.93072 0.99000 1.21553 0.90433 1.02070 0.83931 1.88083 1.20627 1.94894 1.26599 1.21884 0.81935 0.97765 0.96188 0.89774 1.22372 1.02971 0.93639 1.03139 1.20600 0.83227 0.82378 0.88501 1.90488 1.48999 1.52322 1.54045 1.42894 1.02718 1.50142 1.20300 1.19065 1.21552 1.07283 1.00460 0.90135 1.26065 0.95391 0.95786 1.01499 1.69937 1.31704 1.13390 1.35446 0.85391 0.78720 0.76864 0.79612 1.21025 1.21418 1.17653 1.22079 0.86273 1.03483 0.94353 1.23188 0.95979 0.97984 1.03929 1.23378 1.03378 0.92797 1.02153 1.20412 0.92236 0.98035 1.05798 0.86198 0.91227 0.92049 0.82557 0.83129 0.86185 0.92004 0.89790 0.93602 0.88508 0.89145 0.93278 0.85264 0.90247 0.86262 0.85246 0.90776 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.84 10.50 -92.46 -0.97 -8.81 16 3 C 0.11 2.96 6.69 22.51 0.15 3.11 16 4 C -0.20 -4.62 9.04 22.37 0.20 -4.42 16 5 C -0.09 -2.10 10.04 22.25 0.22 -1.88 16 6 C -0.15 -4.64 9.70 22.28 0.22 -4.43 16 7 C -0.06 -1.91 5.51 -19.88 -0.11 -2.02 16 8 C 0.10 3.05 5.87 71.24 0.42 3.47 16 9 O -0.38 -16.44 9.50 -129.94 -1.23 -17.67 16 10 C 0.08 3.40 2.35 29.85 0.07 3.47 16 11 H 0.08 3.05 7.21 -2.39 -0.02 3.04 16 12 C -0.16 -5.13 9.15 71.98 0.66 -4.47 16 13 C 0.46 25.18 6.45 87.66 0.57 25.74 16 14 O -0.58 -38.11 14.16 15.99 0.23 -37.89 16 15 N -0.44 -22.35 2.85 -613.15 -1.75 -24.10 16 16 C -0.36 -20.04 7.83 84.04 0.66 -19.39 16 17 H 0.08 4.34 7.40 -2.92 -0.02 4.32 16 18 C 0.02 1.11 4.36 84.93 0.37 1.48 16 19 N -0.87 -54.69 11.67 21.66 0.25 -54.44 16 20 Si 0.97 47.22 29.60 68.60 2.03 49.25 16 21 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.25 -11.09 7.11 99.48 0.71 -10.38 16 24 C 0.04 1.60 4.30 44.99 0.19 1.79 16 25 C -0.17 -5.73 9.81 30.62 0.30 -5.43 16 26 C -0.18 -5.37 9.39 30.62 0.29 -5.08 16 27 C -0.15 -4.28 9.64 22.37 0.22 -4.07 16 28 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 30 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 31 H 0.16 2.48 6.30 -2.91 -0.02 2.46 16 32 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.06 1.86 8.03 -2.39 -0.02 1.85 16 35 H 0.08 2.11 7.81 -2.39 -0.02 2.09 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 2.73 4.37 -2.39 -0.01 2.72 16 38 H 0.09 2.14 7.87 -2.38 -0.02 2.12 16 39 H 0.26 15.72 8.32 -92.71 -0.77 14.95 16 40 H 0.13 4.08 6.24 -2.39 -0.01 4.06 16 41 H 0.08 3.10 6.83 -2.39 -0.02 3.09 16 42 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 43 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 45 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -83.45 370.11 5.08 -78.38 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.99 Total: 26.06 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 5.53 Total: -10.78 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.50 Total: -78.54 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -1.98 Total: -64.37 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -83.45 5.08 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.512 kcal (2) G-P(sol) polarization free energy of solvation -83.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds