Wall clock time and date at job start Tue Mar 31 2020 12:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42909 * 109.47180 * 2 1 4 4 C 1.35825 * 116.99826 * 179.97438 * 3 2 1 5 5 C 1.38867 * 119.90384 * 0.02562 * 4 3 2 6 6 C 1.37741 * 120.17382 * 180.02562 * 5 4 3 7 7 C 1.39984 * 119.97400 * 359.97158 * 6 5 4 8 8 C 1.46951 * 120.09823 * 179.97438 * 7 6 5 9 9 C 1.35143 * 119.99906 * 0.02562 * 8 7 6 10 10 C 1.41800 * 119.99882 * 179.97438 * 9 8 7 11 11 O 1.21776 * 120.00061 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99697 * 179.97438 * 10 9 8 13 13 C 1.36744 * 119.99440 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00570 * 322.44985 * 13 12 10 15 15 C 1.39098 * 119.99771 * 142.46212 * 13 12 10 16 16 N 1.31341 * 119.99982 * 337.81775 * 15 13 12 17 17 Si 1.86800 * 119.99913 * 157.82073 * 15 13 12 18 18 H 1.48496 * 109.47230 * 89.99709 * 17 15 13 19 19 H 1.48507 * 109.46981 * 209.99899 * 17 15 13 20 20 H 1.48503 * 109.47047 * 329.99560 * 17 15 13 21 21 C 1.46499 * 119.99977 * 359.97438 * 12 10 9 22 22 C 1.52994 * 109.47150 * 84.21183 * 21 12 10 23 23 C 1.39994 * 119.80766 * 359.97438 * 7 6 5 24 24 C 1.38085 * 119.82079 * 0.05530 * 23 7 6 25 25 O 1.35990 * 119.98906 * 179.97438 * 24 23 7 26 26 C 1.42905 * 116.99975 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47568 * 299.99772 * 1 2 3 28 28 H 1.09003 * 109.47269 * 59.99724 * 1 2 3 29 29 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47568 * 240.00228 * 2 1 3 31 31 H 1.08999 * 109.47467 * 119.99793 * 2 1 3 32 32 H 1.07998 * 119.91391 * 0.02562 * 5 4 3 33 33 H 1.07999 * 120.01157 * 179.70449 * 6 5 4 34 34 H 1.07999 * 120.00102 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.99839 * 359.97438 * 9 8 7 36 36 H 0.96995 * 120.00289 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46691 * 204.21319 * 21 12 10 38 38 H 1.08998 * 109.47092 * 324.20850 * 21 12 10 39 39 H 1.08998 * 109.47395 * 59.99852 * 22 21 12 40 40 H 1.09000 * 109.47098 * 179.97438 * 22 21 12 41 41 H 1.09001 * 109.47434 * 299.99681 * 22 21 12 42 42 H 1.07998 * 120.08973 * 180.02562 * 23 7 6 43 43 H 1.08998 * 109.47079 * 299.99991 * 26 25 24 44 44 H 1.08996 * 109.46992 * 60.00131 * 26 25 24 45 45 H 1.08995 * 109.47270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1969 0.4225 0.0005 6 6 5.5632 0.5965 0.0016 7 6 6.1038 1.8878 0.0021 8 6 7.5612 2.0765 0.0038 9 6 8.3816 1.0026 0.0044 10 6 9.7879 1.1848 0.0055 11 8 10.2562 2.3089 0.0055 12 7 10.6061 0.1138 0.0066 13 6 11.9622 0.2895 0.0082 14 1 12.4032 1.0942 -0.5613 15 6 12.7738 -0.5684 0.7432 16 7 12.2715 -1.2452 1.7506 17 14 14.5779 -0.7578 0.2976 18 1 15.3805 0.2421 1.0468 19 1 15.0345 -2.1256 0.6528 20 1 14.7530 -0.5407 -1.1610 21 6 10.0426 -1.2385 0.0072 22 6 9.7128 -1.6542 -1.4278 23 6 5.2521 2.9988 0.0010 24 6 3.8835 2.8149 0.0005 25 8 3.0530 3.8917 0.0000 26 6 3.6650 5.1831 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7809 -0.5741 -0.0003 33 1 6.2172 -0.2629 0.0064 34 1 7.9766 3.0734 0.0038 35 1 7.9662 0.0058 0.0040 36 1 12.8375 -1.8431 2.2634 37 1 10.7678 -1.9341 0.4295 38 1 9.1331 -1.2529 0.6078 39 1 10.6223 -1.6399 -2.0284 40 1 9.2940 -2.6605 -1.4274 41 1 8.9876 -0.9587 -1.8501 42 1 5.6643 3.9970 0.0010 43 1 4.2843 5.2913 0.8909 44 1 4.2855 5.2913 -0.8891 45 1 2.8920 5.9515 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:02 Heat of formation + Delta-G solvation = -59.201741 kcal Electronic energy + Delta-G solvation = -26190.659613 eV Core-core repulsion = 22368.028140 eV Total energy + Delta-G solvation = -3822.631473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57983 -38.81100 -38.61823 -37.18337 -35.08191 -33.14754 -32.14862 -31.63370 -30.42589 -29.50142 -28.92194 -27.17394 -25.41289 -24.07704 -23.41278 -22.33164 -21.58510 -20.68215 -18.68067 -18.23085 -17.12610 -16.78190 -16.44086 -16.38638 -16.13844 -15.58356 -15.06206 -14.83132 -14.42496 -14.27375 -14.06276 -13.71365 -13.44448 -13.25678 -12.92814 -12.85428 -12.71824 -12.33208 -12.29110 -12.03221 -11.90204 -11.71698 -11.53891 -11.29727 -11.24812 -11.13009 -11.03091 -10.98484 -10.72846 -10.50219 -10.39639 -10.11449 -9.39697 -8.98345 -8.52566 -8.43099 -7.56449 -7.39952 -6.42436 -3.97112 0.84659 1.35119 2.40359 3.06318 3.15610 3.19421 3.22450 3.28078 3.82659 4.10679 4.50287 4.63400 4.68789 4.73115 4.84556 4.96223 4.96662 4.99426 5.04493 5.08597 5.19144 5.26739 5.29161 5.38485 5.43043 5.53437 5.58824 5.69137 5.77509 5.85760 5.97384 6.16298 6.17648 6.25255 6.32189 6.39164 6.48769 6.64971 6.81745 6.93581 6.97939 7.04589 7.17267 7.51100 7.52520 8.23207 8.48806 9.16513 9.35225 10.01957 10.61307 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.002626 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.022455 B =10660.290868 C =11698.203513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.307 6.307 4 C 0.095 3.905 5 C -0.170 4.170 6 C -0.108 4.108 7 C -0.042 4.042 8 C -0.080 4.080 9 C -0.159 4.159 10 C 0.472 3.528 11 O -0.592 6.592 12 N -0.425 5.425 13 C -0.304 4.304 14 H 0.093 0.907 15 C 0.037 3.963 16 N -0.860 5.860 17 Si 0.918 3.082 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.268 1.268 21 C 0.098 3.902 22 C -0.166 4.166 23 C -0.162 4.162 24 C 0.098 3.902 25 O -0.309 6.309 26 C 0.025 3.975 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.270 0.730 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.138 0.862 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 0.305 -3.352 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.221 6.221 4 C 0.049 3.951 5 C -0.189 4.189 6 C -0.126 4.126 7 C -0.042 4.042 8 C -0.102 4.102 9 C -0.180 4.180 10 C 0.265 3.735 11 O -0.479 6.479 12 N -0.142 5.142 13 C -0.432 4.432 14 H 0.111 0.889 15 C -0.168 4.168 16 N -0.496 5.496 17 Si 0.744 3.256 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.026 4.026 22 C -0.224 4.224 23 C -0.180 4.180 24 C 0.052 3.948 25 O -0.223 6.223 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.156 0.844 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.160 0.807 -3.204 20.429 hybrid contribution 1.183 -0.455 -0.033 1.268 sum -18.977 0.352 -3.237 19.254 Atomic orbital electron populations 1.21753 0.92872 1.02652 1.03495 1.22777 0.95815 0.82344 1.01350 1.86104 1.18346 1.28638 1.89019 1.18294 0.82891 0.91090 1.02819 1.20954 0.93844 0.97257 1.06866 1.21169 0.94136 0.97009 1.00274 1.18846 0.93221 0.92238 0.99913 1.22073 0.89712 0.99918 0.98460 1.22486 0.95285 0.98956 1.01239 1.17087 0.86533 0.85743 0.84167 1.90643 1.77857 1.23467 1.55947 1.43514 1.05875 1.03613 1.61168 1.19453 0.80401 1.15978 1.27377 0.88925 1.25457 1.00330 0.97453 0.93609 1.69937 1.37656 1.27037 1.15000 0.86079 0.82461 0.77648 0.79437 1.20121 1.20704 1.19232 1.21553 0.98992 0.87412 0.94672 1.22246 1.01411 0.99828 0.98938 1.21239 0.90710 0.99923 1.06173 1.18068 0.88747 0.85295 1.02649 1.86140 1.33838 1.13048 1.89305 1.23065 0.99829 0.82558 1.01539 0.91566 0.91586 0.90492 0.92103 0.92077 0.84790 0.84960 0.85165 0.86422 0.91995 0.87676 0.93084 0.92343 0.92990 0.93580 0.84407 0.92577 0.92597 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.15 0.38 -0.64 16 2 C 0.05 0.46 5.46 37.15 0.20 0.66 16 3 O -0.31 -3.94 9.91 -33.87 -0.34 -4.27 16 4 C 0.09 1.29 6.71 -38.90 -0.26 1.03 16 5 C -0.17 -2.11 9.01 -39.53 -0.36 -2.47 16 6 C -0.11 -1.48 9.40 -39.11 -0.37 -1.85 16 7 C -0.04 -0.64 5.87 -105.06 -0.62 -1.25 16 8 C -0.08 -1.44 9.41 -37.16 -0.35 -1.79 16 9 C -0.16 -3.17 7.94 -39.32 -0.31 -3.48 16 10 C 0.47 11.94 7.36 -14.89 -0.11 11.83 16 11 O -0.59 -17.05 15.97 5.12 0.08 -16.97 16 12 N -0.42 -10.86 2.52 -118.00 -0.30 -11.16 16 13 C -0.30 -8.42 8.88 -15.04 -0.13 -8.55 16 14 H 0.09 2.69 7.77 -52.49 -0.41 2.28 16 15 C 0.04 0.97 4.87 -17.44 -0.08 0.89 16 16 N -0.86 -22.92 11.60 55.50 0.64 -22.28 16 17 Si 0.92 20.25 29.61 -169.99 -5.03 15.22 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 C 0.10 2.10 5.28 -4.05 -0.02 2.08 16 22 C -0.17 -2.93 10.05 37.15 0.37 -2.56 16 23 C -0.16 -2.25 8.78 -38.98 -0.34 -2.59 16 24 C 0.10 1.37 6.69 -39.18 -0.26 1.11 16 25 O -0.31 -4.11 10.27 -34.39 -0.35 -4.46 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 31 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 32 H 0.13 1.29 6.27 -52.49 -0.33 0.96 16 33 H 0.13 1.69 6.15 -52.49 -0.32 1.36 16 34 H 0.13 2.45 7.45 -52.49 -0.39 2.06 16 35 H 0.12 2.04 3.97 -52.49 -0.21 1.83 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.11 2.46 5.63 -51.93 -0.29 2.17 16 38 H 0.05 1.00 6.43 -51.93 -0.33 0.66 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 42 H 0.14 1.66 6.28 -52.49 -0.33 1.33 16 43 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 44 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -33.24 372.22 -7.22 -40.46 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.26 Total: 4.22 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.27 Total: -6.37 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.35 Total: -33.43 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.61 Total: -25.70 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.24 -7.22 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds