Wall clock time and date at job start Tue Mar 31 2020 12:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42909 * 109.47180 * 2 1 4 4 C 1.35825 * 116.99826 * 179.97438 * 3 2 1 5 5 C 1.38867 * 119.90384 * 0.02562 * 4 3 2 6 6 C 1.37741 * 120.17382 * 180.02562 * 5 4 3 7 7 C 1.39984 * 119.97400 * 359.97158 * 6 5 4 8 8 C 1.46951 * 120.09823 * 179.97438 * 7 6 5 9 9 C 1.35143 * 119.99906 * 0.02562 * 8 7 6 10 10 C 1.41800 * 119.99882 * 179.97438 * 9 8 7 11 11 O 1.21776 * 120.00061 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99697 * 179.97438 * 10 9 8 13 13 C 1.36744 * 119.99440 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00570 * 322.44985 * 13 12 10 15 15 C 1.39098 * 119.99771 * 142.46212 * 13 12 10 16 16 N 1.31341 * 119.99982 * 337.81775 * 15 13 12 17 17 Si 1.86800 * 119.99913 * 157.82073 * 15 13 12 18 18 H 1.48496 * 109.47230 * 89.99709 * 17 15 13 19 19 H 1.48507 * 109.46981 * 209.99899 * 17 15 13 20 20 H 1.48503 * 109.47047 * 329.99560 * 17 15 13 21 21 C 1.46499 * 119.99977 * 359.97438 * 12 10 9 22 22 C 1.52994 * 109.47150 * 84.21183 * 21 12 10 23 23 C 1.39994 * 119.80766 * 359.97438 * 7 6 5 24 24 C 1.38085 * 119.82079 * 0.05530 * 23 7 6 25 25 O 1.35990 * 119.98906 * 179.97438 * 24 23 7 26 26 C 1.42905 * 116.99975 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47568 * 299.99772 * 1 2 3 28 28 H 1.09003 * 109.47269 * 59.99724 * 1 2 3 29 29 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47568 * 240.00228 * 2 1 3 31 31 H 1.08999 * 109.47467 * 119.99793 * 2 1 3 32 32 H 1.07998 * 119.91391 * 0.02562 * 5 4 3 33 33 H 1.07999 * 120.01157 * 179.70449 * 6 5 4 34 34 H 1.07999 * 120.00102 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.99839 * 359.97438 * 9 8 7 36 36 H 0.96995 * 120.00289 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46691 * 204.21319 * 21 12 10 38 38 H 1.08998 * 109.47092 * 324.20850 * 21 12 10 39 39 H 1.08998 * 109.47395 * 59.99852 * 22 21 12 40 40 H 1.09000 * 109.47098 * 179.97438 * 22 21 12 41 41 H 1.09001 * 109.47434 * 299.99681 * 22 21 12 42 42 H 1.07998 * 120.08973 * 180.02562 * 23 7 6 43 43 H 1.08998 * 109.47079 * 299.99991 * 26 25 24 44 44 H 1.08996 * 109.46992 * 60.00131 * 26 25 24 45 45 H 1.08995 * 109.47270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1969 0.4225 0.0005 6 6 5.5632 0.5965 0.0016 7 6 6.1038 1.8878 0.0021 8 6 7.5612 2.0765 0.0038 9 6 8.3816 1.0026 0.0044 10 6 9.7879 1.1848 0.0055 11 8 10.2562 2.3089 0.0055 12 7 10.6061 0.1138 0.0066 13 6 11.9622 0.2895 0.0082 14 1 12.4032 1.0942 -0.5613 15 6 12.7738 -0.5684 0.7432 16 7 12.2715 -1.2452 1.7506 17 14 14.5779 -0.7578 0.2976 18 1 15.3805 0.2421 1.0468 19 1 15.0345 -2.1256 0.6528 20 1 14.7530 -0.5407 -1.1610 21 6 10.0426 -1.2385 0.0072 22 6 9.7128 -1.6542 -1.4278 23 6 5.2521 2.9988 0.0010 24 6 3.8835 2.8149 0.0005 25 8 3.0530 3.8917 0.0000 26 6 3.6650 5.1831 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7809 -0.5741 -0.0003 33 1 6.2172 -0.2629 0.0064 34 1 7.9766 3.0734 0.0038 35 1 7.9662 0.0058 0.0040 36 1 12.8375 -1.8431 2.2634 37 1 10.7678 -1.9341 0.4295 38 1 9.1331 -1.2529 0.6078 39 1 10.6223 -1.6399 -2.0284 40 1 9.2940 -2.6605 -1.4274 41 1 8.9876 -0.9587 -1.8501 42 1 5.6643 3.9970 0.0010 43 1 4.2843 5.2913 0.8909 44 1 4.2855 5.2913 -0.8891 45 1 2.8920 5.9515 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:01 Heat of formation + Delta-G solvation = -78.700798 kcal Electronic energy + Delta-G solvation = -26191.505156 eV Core-core repulsion = 22368.028140 eV Total energy + Delta-G solvation = -3823.477016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58395 -40.62705 -39.53750 -38.29904 -36.96921 -34.55605 -33.90440 -32.48932 -31.48447 -31.18816 -30.03228 -28.18421 -27.11619 -25.04366 -24.66266 -23.89633 -22.59550 -21.99040 -19.92381 -19.51768 -18.82700 -18.25845 -17.73893 -17.43580 -17.22072 -16.90595 -16.39633 -16.02143 -15.80555 -15.64141 -15.40358 -15.12328 -14.76950 -14.53394 -14.23454 -13.97449 -13.63833 -13.58092 -13.48197 -13.21408 -13.16983 -13.02202 -12.88037 -12.71485 -12.55828 -12.33195 -12.22804 -12.20501 -12.08747 -11.87325 -11.79015 -11.70381 -10.93292 -10.63697 -10.43103 -9.65415 -9.45343 -8.61508 -8.38884 -6.05155 -0.42330 0.31963 1.03770 1.40907 1.41030 1.54255 2.21849 2.28173 2.32029 2.50579 2.81516 3.13170 3.14188 3.70797 3.71564 3.95097 4.08557 4.10919 4.19890 4.25697 4.29071 4.29500 4.39256 4.39910 4.43975 4.52423 4.61787 4.62275 4.73459 4.82385 4.87843 4.98385 5.02709 5.02961 5.08184 5.19839 5.27756 5.28974 5.41011 5.49898 5.54529 5.61060 5.68168 6.09837 6.20612 6.55343 6.57992 7.17310 7.43843 8.08130 8.63549 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.002626 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.022455 B =10660.290868 C =11698.203513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.098 3.902 5 C -0.167 4.167 6 C -0.100 4.100 7 C -0.072 4.072 8 C -0.039 4.039 9 C -0.191 4.191 10 C 0.463 3.537 11 O -0.646 6.646 12 N -0.440 5.440 13 C -0.344 4.344 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.882 5.882 17 Si 0.982 3.018 18 H -0.278 1.278 19 H -0.264 1.264 20 H -0.266 1.266 21 C 0.097 3.903 22 C -0.154 4.154 23 C -0.155 4.155 24 C 0.082 3.918 25 O -0.325 6.325 26 C 0.017 3.983 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.276 0.724 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.149 0.851 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.471 -1.307 -3.641 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.052 3.948 5 C -0.186 4.186 6 C -0.118 4.118 7 C -0.072 4.072 8 C -0.061 4.061 9 C -0.211 4.211 10 C 0.257 3.743 11 O -0.537 6.537 12 N -0.156 5.156 13 C -0.472 4.472 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.518 5.518 17 Si 0.805 3.195 18 H -0.204 1.204 19 H -0.188 1.188 20 H -0.190 1.190 21 C -0.026 4.026 22 C -0.212 4.212 23 C -0.174 4.174 24 C 0.036 3.964 25 O -0.240 6.240 26 C -0.078 4.078 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.184 0.816 33 H 0.163 0.837 34 H 0.133 0.867 35 H 0.164 0.836 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.167 0.833 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.525 -0.842 -3.492 22.809 hybrid contribution 1.573 0.175 0.084 1.585 sum -20.952 -0.667 -3.409 21.238 Atomic orbital electron populations 1.21791 0.91561 1.04150 1.03026 1.23149 0.96952 0.80706 1.02596 1.86110 1.17775 1.31309 1.88559 1.18607 0.83676 0.91364 1.01187 1.21231 0.93012 0.98443 1.05865 1.21369 0.95035 0.96601 0.98789 1.18727 0.91467 0.93706 1.03344 1.22170 0.91331 0.98717 0.93851 1.22200 0.92299 1.00892 1.05756 1.17886 0.88673 0.84978 0.82755 1.90583 1.79295 1.25408 1.58376 1.43744 1.05367 1.05204 1.61287 1.19363 0.82131 1.16764 1.28973 0.91948 1.26191 1.04204 0.96525 0.92947 1.69991 1.39216 1.27312 1.15310 0.85129 0.77184 0.78148 0.79031 1.20392 1.18795 1.19049 1.21675 0.98760 0.84866 0.97313 1.22133 1.01044 1.02103 0.95956 1.21350 0.90812 1.00217 1.05029 1.18260 0.88815 0.86131 1.03173 1.86124 1.34512 1.14065 1.89276 1.23341 1.00938 0.81430 1.02056 0.92088 0.92025 0.87996 0.90705 0.90825 0.81634 0.83697 0.86714 0.83597 0.91379 0.89837 0.91309 0.93997 0.89186 0.92737 0.83308 0.92109 0.91989 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.58 5.46 71.98 0.39 0.97 16 3 O -0.32 -7.51 9.91 -77.55 -0.77 -8.28 16 4 C 0.10 2.43 6.71 22.71 0.15 2.59 16 5 C -0.17 -3.59 9.01 22.30 0.20 -3.39 16 6 C -0.10 -2.49 9.40 22.58 0.21 -2.27 16 7 C -0.07 -2.10 5.87 -20.15 -0.12 -2.22 16 8 C -0.04 -1.41 9.41 23.84 0.22 -1.19 16 9 C -0.19 -7.65 7.94 22.44 0.18 -7.48 16 10 C 0.46 24.32 7.36 85.12 0.63 24.95 16 11 O -0.65 -39.31 15.97 -4.59 -0.07 -39.38 16 12 N -0.44 -23.25 2.52 -645.43 -1.63 -24.88 16 13 C -0.34 -19.95 8.88 84.13 0.75 -19.20 16 14 H 0.06 3.88 7.77 -2.91 -0.02 3.86 16 15 C 0.01 0.27 4.87 84.97 0.41 0.68 16 16 N -0.88 -47.66 11.60 21.69 0.25 -47.41 16 17 Si 0.98 42.27 29.61 68.60 2.03 44.30 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.10 4.15 5.28 86.38 0.46 4.60 16 22 C -0.15 -5.26 10.05 71.98 0.72 -4.53 16 23 C -0.16 -4.13 8.78 22.66 0.20 -3.93 16 24 C 0.08 2.16 6.69 22.53 0.15 2.32 16 25 O -0.33 -8.17 10.27 -79.40 -0.82 -8.98 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 31 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 32 H 0.17 2.43 6.27 -2.91 -0.02 2.42 16 33 H 0.15 3.21 6.15 -2.91 -0.02 3.20 16 34 H 0.11 4.45 7.45 -2.91 -0.02 4.43 16 35 H 0.15 4.85 3.97 -2.91 -0.01 4.84 16 36 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.08 3.95 5.63 -2.39 -0.01 3.93 16 38 H 0.07 2.63 6.43 -2.39 -0.02 2.61 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.05 1.75 7.47 -2.39 -0.02 1.74 16 42 H 0.15 3.47 6.28 -2.91 -0.02 3.45 16 43 H 0.06 0.95 7.66 -2.39 -0.02 0.94 16 44 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 45 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.94 372.22 6.41 -69.52 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 1.00 Total: 22.69 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 6.41 Total: -7.58 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.38 Total: -72.29 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.66 Total: -56.64 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -75.94 6.41 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.176 kcal (2) G-P(sol) polarization free energy of solvation -75.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds