Wall clock time and date at job start Tue Mar 31 2020 12:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.49748 * 54.99971 * 5 4 3 7 7 C 1.53040 * 109.50107 * 294.93469 * 5 4 3 8 8 C 1.53035 * 109.54062 * 178.71837 * 7 5 4 9 9 C 1.53191 * 109.34184 * 61.31436 * 8 7 5 10 10 N 1.46927 * 108.77595 * 305.38221 * 9 8 7 11 11 S 1.65597 * 120.63034 * 233.58485 * 10 9 8 12 12 O 1.42102 * 104.27799 * 26.09568 * 11 10 9 13 13 O 1.42102 * 104.27825 * 153.94924 * 11 10 9 14 14 C 1.81398 * 104.45053 * 270.02287 * 11 10 9 15 15 C 1.53003 * 109.47008 * 179.97438 * 14 11 10 16 16 C 1.53003 * 109.46921 * 179.97438 * 15 14 11 17 17 C 1.50690 * 109.47020 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00502 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00412 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00639 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99427 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46863 * 89.99894 * 21 19 17 23 23 H 1.48494 * 109.47076 * 210.00019 * 21 19 17 24 24 H 1.48498 * 109.47168 * 330.00065 * 21 19 17 25 25 C 1.46922 * 118.73828 * 53.60591 * 10 9 8 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 32 32 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 33 33 H 1.09003 * 109.45980 * 298.70766 * 7 5 4 34 34 H 1.08999 * 109.45856 * 58.66303 * 7 5 4 35 35 H 1.09005 * 109.46843 * 301.36611 * 8 7 5 36 36 H 1.08996 * 109.50066 * 181.28604 * 8 7 5 37 37 H 1.09001 * 109.58484 * 185.59370 * 9 8 7 38 38 H 1.08997 * 109.70247 * 65.23843 * 9 8 7 39 39 H 1.08997 * 109.46856 * 299.99999 * 14 11 10 40 40 H 1.09003 * 109.47034 * 59.99889 * 14 11 10 41 41 H 1.08997 * 109.47393 * 299.99771 * 15 14 11 42 42 H 1.09003 * 109.47231 * 60.00110 * 15 14 11 43 43 H 1.08998 * 109.47357 * 300.00783 * 16 15 14 44 44 H 1.09003 * 109.46783 * 60.00197 * 16 15 14 45 45 H 0.96993 * 120.00143 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58482 * 186.60084 * 25 10 9 47 47 H 1.09004 * 109.58483 * 66.18182 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3491 3.4424 0.8410 7 6 3.3698 3.5881 -1.3088 8 6 3.7355 5.0741 -1.2970 9 6 5.2563 5.2215 -1.1868 10 7 5.7194 4.4768 -0.0080 11 16 6.6440 5.2181 1.1487 12 8 6.2934 6.5916 1.0504 13 8 6.3826 4.4783 2.3335 14 6 8.3527 4.9563 0.5987 15 6 9.3146 5.6037 1.5970 16 6 10.7558 5.3824 1.1334 17 6 11.7032 6.0206 2.1163 18 1 11.3162 6.5325 2.9849 19 6 13.0642 5.9510 1.9066 20 7 13.8911 6.5075 2.7646 21 14 13.7336 5.0662 0.4038 22 1 13.8602 6.0274 -0.7210 23 1 15.0675 4.4948 0.7191 24 1 12.8053 3.9730 0.0186 25 6 5.3470 3.0618 0.1248 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8332 0.9769 0.8908 32 1 3.8340 0.9766 -0.8891 33 1 3.8647 3.0995 -2.1482 34 1 2.2901 3.4802 -1.4114 35 1 3.2603 5.5584 -0.4439 36 1 3.3906 5.5410 -2.2196 37 1 5.5144 6.2750 -1.0782 38 1 5.7303 4.8197 -2.0823 39 1 8.5554 3.8870 0.5394 40 1 8.4913 5.4075 -0.3838 41 1 9.1117 6.6730 1.6559 42 1 9.1761 5.1529 2.5797 43 1 10.9584 4.3130 1.0747 44 1 10.8946 5.8329 0.1506 45 1 14.8485 6.4582 2.6173 46 1 5.6651 2.6901 1.0989 47 1 5.8266 2.4821 -0.6640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072992206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:50 Heat of formation + Delta-G solvation = -143.466745 kcal Electronic energy + Delta-G solvation = -25361.718425 eV Core-core repulsion = 21670.876899 eV Total energy + Delta-G solvation = -3690.841527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.35951 -37.82514 -37.04024 -35.80651 -34.81617 -33.40599 -32.22343 -32.07600 -31.03840 -28.38227 -26.21681 -24.79904 -23.53230 -23.10311 -22.37634 -20.55544 -20.33828 -18.77317 -17.70469 -17.06326 -16.90041 -16.45460 -16.11884 -16.00683 -15.11002 -14.98273 -14.77083 -14.41650 -14.23053 -14.16620 -13.91981 -13.37708 -13.22371 -12.92806 -12.89903 -12.41483 -12.36008 -12.15884 -11.99513 -11.95515 -11.91532 -11.71364 -11.66043 -11.58532 -11.28851 -11.06525 -10.99189 -10.95917 -10.71405 -10.65490 -10.10633 -9.92418 -9.88962 -9.73126 -9.29295 -9.04261 -8.59824 -6.09356 -4.08675 0.33922 2.63281 3.25525 3.30617 3.33079 3.35056 3.94043 4.21962 4.29029 4.39232 4.53245 4.59462 4.66095 4.78221 4.82568 4.89055 4.97817 4.99548 5.05176 5.07728 5.10620 5.16881 5.24257 5.27970 5.29885 5.39919 5.49913 5.51445 5.53104 5.68134 5.72297 5.74573 5.84986 5.94227 6.01948 6.11954 6.13256 6.25423 6.41480 6.65699 6.87346 7.11268 7.25288 7.69995 8.46676 8.95066 9.51636 11.03893 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002542 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.585143 B =11013.909682 C =11383.078622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.068 3.932 5 C -0.098 4.098 6 H 0.086 0.914 7 C -0.108 4.108 8 C -0.131 4.131 9 C 0.115 3.885 10 N -1.003 6.003 11 S 2.599 3.401 12 O -0.956 6.956 13 O -0.957 6.957 14 C -0.615 4.615 15 C -0.098 4.098 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.124 3.876 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.264 0.736 46 H 0.097 0.903 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.937 -12.237 -11.530 30.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.306 6.306 4 C -0.009 4.009 5 C -0.118 4.118 6 H 0.104 0.896 7 C -0.145 4.145 8 C -0.170 4.170 9 C -0.010 4.010 10 N -0.839 5.839 11 S 2.696 3.304 12 O -0.946 6.946 13 O -0.947 6.947 14 C -0.746 4.746 15 C -0.137 4.137 16 C -0.043 4.043 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.135 4.135 20 N -0.538 5.538 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.002 4.002 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.218 -11.591 -10.731 29.756 hybrid contribution 1.174 -1.004 -1.270 2.000 sum -24.043 -12.594 -12.001 29.677 Atomic orbital electron populations 1.21741 0.93783 1.02191 1.03153 1.22452 0.95578 0.83889 1.00059 1.87879 1.21035 1.26267 1.95432 1.22455 0.81404 0.96621 1.00453 1.21452 0.95694 0.94520 1.00182 0.89584 1.21475 1.01656 0.95054 0.96351 1.21861 0.95591 0.96928 1.02668 1.21479 0.95128 0.97041 0.87347 1.57834 1.67153 1.19991 1.38942 1.05405 0.77079 0.74033 0.73853 1.93564 1.82112 1.32947 1.86013 1.93562 1.84012 1.72811 1.44343 1.30654 1.21686 1.10919 1.11374 1.21320 0.96463 0.99923 0.96027 1.19527 0.90633 0.97135 0.96978 1.21135 0.90536 1.35551 1.09300 0.90723 1.25033 0.97004 0.95043 0.96374 1.69906 1.03032 1.44670 1.36222 0.86770 0.78390 0.80564 0.83496 1.20220 1.21259 1.19080 1.21327 0.94355 0.81282 1.03215 0.91901 0.91172 0.91813 0.93497 0.93376 0.92846 0.93081 0.91999 0.90973 0.91257 0.90721 0.88654 0.91420 0.85484 0.85452 0.91007 0.91001 0.96200 0.96625 0.92617 0.88502 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.39 -3.58 9.86 -35.23 -0.35 -3.92 16 4 C 0.07 0.54 5.32 37.16 0.20 0.74 16 5 C -0.10 -0.89 2.58 -90.50 -0.23 -1.12 16 6 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 7 C -0.11 -0.87 5.08 -26.69 -0.14 -1.01 16 8 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 9 C 0.12 1.07 6.43 -3.71 -0.02 1.04 16 10 N -1.00 -10.95 3.22 -113.52 -0.37 -11.31 16 11 S 2.60 37.41 5.45 -107.50 -0.59 36.83 16 12 O -0.96 -16.36 16.59 -57.54 -0.95 -17.31 16 13 O -0.96 -16.31 16.59 -57.54 -0.95 -17.26 16 14 C -0.61 -8.85 6.18 37.16 0.23 -8.62 16 15 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 16 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 17 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 18 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 21 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 25 C 0.12 1.15 5.72 -3.71 -0.02 1.13 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.94 6.86 -51.93 -0.36 0.59 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 44 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.10 0.95 6.86 -51.93 -0.36 0.59 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -35.20 383.54 -10.18 -45.38 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.66 Total: -3.26 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -0.20 Total: -24.73 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.41 Total: -38.22 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.26 Total: -38.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 37.41 SS G_CDS: -0.59 Total: 36.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.20 -10.18 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072992206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.088 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds