Wall clock time and date at job start Tue Mar 31 2020 12:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.49748 * 54.99971 * 5 4 3 7 7 C 1.53040 * 109.50107 * 294.93469 * 5 4 3 8 8 C 1.53035 * 109.54062 * 178.71837 * 7 5 4 9 9 C 1.53191 * 109.34184 * 61.31436 * 8 7 5 10 10 N 1.46927 * 108.77595 * 305.38221 * 9 8 7 11 11 S 1.65597 * 120.63034 * 233.58485 * 10 9 8 12 12 O 1.42102 * 104.27799 * 26.09568 * 11 10 9 13 13 O 1.42102 * 104.27825 * 153.94924 * 11 10 9 14 14 C 1.81398 * 104.45053 * 270.02287 * 11 10 9 15 15 C 1.53003 * 109.47008 * 179.97438 * 14 11 10 16 16 C 1.53003 * 109.46921 * 179.97438 * 15 14 11 17 17 C 1.50690 * 109.47020 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00502 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00412 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00639 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99427 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46863 * 89.99894 * 21 19 17 23 23 H 1.48494 * 109.47076 * 210.00019 * 21 19 17 24 24 H 1.48498 * 109.47168 * 330.00065 * 21 19 17 25 25 C 1.46922 * 118.73828 * 53.60591 * 10 9 8 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 32 32 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 33 33 H 1.09003 * 109.45980 * 298.70766 * 7 5 4 34 34 H 1.08999 * 109.45856 * 58.66303 * 7 5 4 35 35 H 1.09005 * 109.46843 * 301.36611 * 8 7 5 36 36 H 1.08996 * 109.50066 * 181.28604 * 8 7 5 37 37 H 1.09001 * 109.58484 * 185.59370 * 9 8 7 38 38 H 1.08997 * 109.70247 * 65.23843 * 9 8 7 39 39 H 1.08997 * 109.46856 * 299.99999 * 14 11 10 40 40 H 1.09003 * 109.47034 * 59.99889 * 14 11 10 41 41 H 1.08997 * 109.47393 * 299.99771 * 15 14 11 42 42 H 1.09003 * 109.47231 * 60.00110 * 15 14 11 43 43 H 1.08998 * 109.47357 * 300.00783 * 16 15 14 44 44 H 1.09003 * 109.46783 * 60.00197 * 16 15 14 45 45 H 0.96993 * 120.00143 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58482 * 186.60084 * 25 10 9 47 47 H 1.09004 * 109.58483 * 66.18182 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3491 3.4424 0.8410 7 6 3.3698 3.5881 -1.3088 8 6 3.7355 5.0741 -1.2970 9 6 5.2563 5.2215 -1.1868 10 7 5.7194 4.4768 -0.0080 11 16 6.6440 5.2181 1.1487 12 8 6.2934 6.5916 1.0504 13 8 6.3826 4.4783 2.3335 14 6 8.3527 4.9563 0.5987 15 6 9.3146 5.6037 1.5970 16 6 10.7558 5.3824 1.1334 17 6 11.7032 6.0206 2.1163 18 1 11.3162 6.5325 2.9849 19 6 13.0642 5.9510 1.9066 20 7 13.8911 6.5075 2.7646 21 14 13.7336 5.0662 0.4038 22 1 13.8602 6.0274 -0.7210 23 1 15.0675 4.4948 0.7191 24 1 12.8053 3.9730 0.0186 25 6 5.3470 3.0618 0.1248 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8332 0.9769 0.8908 32 1 3.8340 0.9766 -0.8891 33 1 3.8647 3.0995 -2.1482 34 1 2.2901 3.4802 -1.4114 35 1 3.2603 5.5584 -0.4439 36 1 3.3906 5.5410 -2.2196 37 1 5.5144 6.2750 -1.0782 38 1 5.7303 4.8197 -2.0823 39 1 8.5554 3.8870 0.5394 40 1 8.4913 5.4075 -0.3838 41 1 9.1117 6.6730 1.6559 42 1 9.1761 5.1529 2.5797 43 1 10.9584 4.3130 1.0747 44 1 10.8946 5.8329 0.1506 45 1 14.8485 6.4582 2.6173 46 1 5.6651 2.6901 1.0989 47 1 5.8266 2.4821 -0.6640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072992206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:49 Heat of formation + Delta-G solvation = -168.215853 kcal Electronic energy + Delta-G solvation = -25362.791627 eV Core-core repulsion = 21670.876899 eV Total energy + Delta-G solvation = -3691.914729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.03415 -38.47273 -38.27803 -37.05738 -36.51164 -34.25507 -34.10265 -32.75821 -31.58906 -30.15772 -26.85106 -25.71632 -25.14521 -23.60801 -23.07897 -22.18050 -21.16465 -19.80903 -18.96585 -18.72152 -17.70258 -17.30907 -17.16382 -16.99915 -16.24460 -16.11768 -15.70410 -15.50559 -15.43932 -14.95227 -14.92445 -14.61702 -14.09622 -14.00233 -13.85149 -13.66556 -13.47088 -13.25267 -13.23535 -13.19028 -12.97979 -12.74529 -12.69815 -12.55949 -12.33145 -12.22521 -11.95837 -11.85091 -11.72183 -11.65629 -11.47456 -11.41778 -11.31458 -11.20371 -10.78117 -10.49201 -9.91369 -8.30346 -6.36623 -0.79998 1.36622 1.39452 1.51099 1.64916 2.36107 2.72943 2.82013 3.04548 3.14647 3.52543 3.74308 3.85956 3.90270 3.96661 4.18073 4.19433 4.21274 4.31478 4.32995 4.39488 4.48775 4.54031 4.55962 4.58692 4.66129 4.68529 4.84303 4.85195 4.88921 4.90594 4.94351 5.01789 5.05830 5.16345 5.27277 5.28447 5.32506 5.35912 5.44678 5.48277 5.61782 5.64192 6.24445 6.32751 6.71559 7.27939 8.86598 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002542 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.585143 B =11013.909682 C =11383.078622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.068 3.932 5 C -0.099 4.099 6 H 0.057 0.943 7 C -0.102 4.102 8 C -0.132 4.132 9 C 0.108 3.892 10 N -0.996 5.996 11 S 2.613 3.387 12 O -0.990 6.990 13 O -0.990 6.990 14 C -0.605 4.605 15 C -0.105 4.105 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.028 0.972 19 C -0.001 4.001 20 N -0.952 5.952 21 Si 0.957 3.043 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.237 1.237 25 C 0.118 3.882 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.267 0.733 46 H 0.088 0.912 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.434 -14.695 -15.227 33.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.330 6.330 4 C -0.009 4.009 5 C -0.119 4.119 6 H 0.075 0.925 7 C -0.139 4.139 8 C -0.171 4.171 9 C -0.017 4.017 10 N -0.834 5.834 11 S 2.711 3.289 12 O -0.980 6.980 13 O -0.981 6.981 14 C -0.737 4.737 15 C -0.144 4.144 16 C -0.043 4.043 17 C -0.583 4.583 18 H 0.047 0.953 19 C -0.198 4.198 20 N -0.592 5.592 21 Si 0.779 3.221 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.160 1.160 25 C -0.007 4.007 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.747 -14.046 -14.417 32.681 hybrid contribution 1.248 -0.199 -0.035 1.264 sum -24.499 -14.245 -14.452 31.812 Atomic orbital electron populations 1.21763 0.93307 1.03212 1.02500 1.22628 0.96069 0.83024 1.00868 1.87853 1.21722 1.27785 1.95608 1.22481 0.81087 0.95822 1.01504 1.21427 0.95441 0.95315 0.99754 0.92469 1.21435 1.01456 0.94677 0.96353 1.21883 0.95072 0.97349 1.02780 1.21748 0.95704 0.96677 0.87539 1.57523 1.66311 1.20819 1.38767 1.04697 0.77344 0.73107 0.73767 1.93518 1.82775 1.35126 1.86577 1.93517 1.84621 1.73239 1.46679 1.30535 1.19697 1.12476 1.10961 1.21191 0.95963 1.00010 0.97234 1.19499 0.91409 0.97255 0.96106 1.21560 0.92073 1.35490 1.09217 0.95347 1.26150 0.97290 0.96008 1.00310 1.70084 1.03544 1.46682 1.38932 0.85565 0.77876 0.79967 0.78680 1.18921 1.21137 1.16026 1.21566 0.94664 0.80357 1.04142 0.92181 0.89332 0.92815 0.92134 0.93040 0.92782 0.90951 0.89939 0.91605 0.93508 0.88619 0.89604 0.88089 0.82656 0.82635 0.92067 0.92057 0.94844 0.95000 0.92424 0.89393 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -7.08 9.86 -148.98 -1.47 -8.54 16 4 C 0.07 0.95 5.32 71.98 0.38 1.34 16 5 C -0.10 -1.64 2.58 -10.72 -0.03 -1.67 16 6 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 7 C -0.10 -1.40 5.08 30.62 0.16 -1.25 16 8 C -0.13 -1.97 6.08 30.67 0.19 -1.79 16 9 C 0.11 1.70 6.43 86.36 0.56 2.25 16 10 N -1.00 -19.59 3.22 -513.07 -1.65 -21.24 16 11 S 2.61 73.07 5.45 -56.49 -0.31 72.76 16 12 O -0.99 -34.01 16.59 -127.65 -2.12 -36.13 16 13 O -0.99 -33.96 16.59 -127.65 -2.12 -36.08 16 14 C -0.61 -15.77 6.18 71.98 0.44 -15.32 16 15 C -0.10 -4.02 5.16 30.60 0.16 -3.87 16 16 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 17 C -0.55 -31.74 9.66 25.60 0.25 -31.49 16 18 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 19 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 20 N -0.95 -60.21 13.96 21.45 0.30 -59.92 16 21 Si 0.96 42.99 27.47 68.60 1.88 44.88 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 25 C 0.12 1.89 5.72 86.36 0.49 2.38 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 35 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.54 6.86 -2.39 -0.02 1.53 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.16 3.20 8.14 -2.39 -0.02 3.19 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 44 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 45 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.09 1.59 6.86 -2.39 -0.02 1.58 16 47 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -79.43 383.54 -0.23 -79.65 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.85 Total: 13.41 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 4.40 Total: -48.80 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.35 Total: -81.16 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -5.70 Total: -80.75 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Atomic # 16 Polarization: 73.07 SS G_CDS: -0.31 Total: 72.76 kcal Total: -79.43 -0.23 -79.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072992206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.562 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds