Wall clock time and date at job start Tue Mar 31 2020 13:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47554 * 2 1 4 4 C 1.42896 * 114.00194 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.56388 * 355.68184 * 4 3 2 6 6 C 1.53001 * 117.50146 * 141.37919 * 4 3 2 7 7 C 1.52999 * 60.00276 * 107.48751 * 6 4 3 8 8 H 1.09004 * 117.50101 * 252.49144 * 7 6 4 9 9 C 1.50706 * 117.50039 * 107.48898 * 7 6 4 10 10 O 1.21280 * 119.99713 * 291.39366 * 9 7 6 11 11 N 1.34769 * 120.00058 * 111.39193 * 9 7 6 12 12 C 1.39916 * 120.00308 * 184.62909 * 11 9 7 13 13 C 1.38937 * 120.04085 * 324.64935 * 12 11 9 14 14 C 1.38119 * 120.03895 * 180.24948 * 13 12 11 15 15 C 1.38214 * 120.12428 * 0.04525 * 14 13 12 16 16 C 1.38764 * 120.08664 * 359.95530 * 15 14 13 17 17 O 1.35897 * 120.01830 * 180.02562 * 16 15 14 18 18 C 1.42903 * 117.00364 * 0.02562 * 17 16 15 19 19 C 1.53000 * 109.47302 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47198 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99655 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99916 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99669 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00268 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46718 * 90.00049 * 24 22 20 26 26 H 1.48499 * 109.47069 * 209.99865 * 24 22 20 27 27 H 1.48495 * 109.46759 * 330.00017 * 24 22 20 28 28 C 1.38627 * 119.95748 * 0.02562 * 16 15 14 29 29 H 1.08999 * 109.46942 * 59.99455 * 1 2 3 30 30 H 1.08997 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47138 * 300.00305 * 1 2 3 32 32 H 1.09003 * 109.46776 * 240.00095 * 2 1 3 33 33 H 1.08998 * 109.47331 * 120.00182 * 2 1 3 34 34 H 1.08998 * 117.49973 * 359.97438 * 6 4 3 35 35 H 1.09000 * 117.49736 * 214.97896 * 6 4 3 36 36 H 0.97009 * 120.00146 * 4.63291 * 11 9 7 37 37 H 1.07994 * 119.97570 * 0.27070 * 13 12 11 38 38 H 1.08000 * 119.93470 * 179.97438 * 14 13 12 39 39 H 1.08003 * 119.95297 * 179.97438 * 15 14 13 40 40 H 1.08997 * 109.46627 * 299.99937 * 18 17 16 41 41 H 1.08999 * 109.47075 * 59.99560 * 18 17 16 42 42 H 1.09002 * 109.47027 * 299.99948 * 19 18 17 43 43 H 1.08997 * 109.47083 * 59.99610 * 19 18 17 44 44 H 0.97001 * 120.00033 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.06011 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9772 0.5196 0.0731 6 6 4.0512 2.5729 -0.8477 7 6 4.0427 2.6873 0.6779 8 1 3.3588 3.4090 1.1247 9 6 5.3544 2.5035 1.3969 10 8 5.8847 1.4131 1.4216 11 7 5.9381 3.5509 2.0122 12 6 7.2011 3.4041 2.5962 13 6 7.5505 2.2056 3.2059 14 6 8.7953 2.0625 3.7870 15 6 9.6959 3.1107 3.7644 16 6 9.3524 4.3101 3.1569 17 8 10.2392 5.3396 3.1350 18 6 11.5069 5.1173 3.7561 19 6 12.3635 6.3791 3.6328 20 6 13.7000 6.1448 4.2882 21 1 13.9170 5.1912 4.7465 22 6 14.6463 7.1476 4.3020 23 7 15.8129 6.9429 4.8735 24 14 14.2712 8.7967 3.5087 25 1 13.6584 9.7015 4.5141 26 1 15.5300 9.3999 3.0020 27 1 13.3272 8.5995 2.3796 28 6 8.1041 4.4573 2.5723 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3727 3.2188 -1.4050 35 1 5.0055 2.3646 -1.3315 36 1 5.4826 4.4065 2.0504 37 1 6.8484 1.3852 3.2252 38 1 9.0650 1.1302 4.2608 39 1 10.6685 2.9960 4.2199 40 1 11.3587 4.8807 4.8097 41 1 12.0115 4.2856 3.2644 42 1 12.5116 6.6161 2.5792 43 1 11.8586 7.2104 4.1248 44 1 16.4785 7.6485 4.8835 45 1 7.8348 5.3902 2.0994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077702425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:40 Heat of formation + Delta-G solvation = -69.075517 kcal Electronic energy + Delta-G solvation = -24974.688104 eV Core-core repulsion = 21151.628472 eV Total energy + Delta-G solvation = -3823.059632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93040 -39.67488 -38.71386 -37.24823 -35.52361 -34.72928 -33.34517 -31.31851 -31.15693 -30.01576 -29.08384 -25.56651 -24.84604 -23.38703 -22.67933 -22.64706 -22.00541 -20.52699 -20.29118 -18.36340 -18.22941 -17.00082 -16.69998 -16.25937 -16.03558 -15.73744 -15.64398 -15.41321 -15.32449 -14.88219 -14.45712 -14.15117 -13.58606 -13.27757 -13.27369 -13.13284 -12.94023 -12.87475 -12.64508 -12.54171 -11.98077 -11.91328 -11.71005 -11.52020 -11.46965 -11.06741 -10.91441 -10.84975 -10.38797 -10.23034 -10.13302 -9.95475 -9.81965 -9.68513 -9.36147 -8.64011 -8.42060 -7.86605 -6.14911 -4.15986 1.22984 1.60711 2.16042 2.45589 3.08490 3.27141 3.34554 3.36417 3.39694 3.77330 3.88606 4.20362 4.29579 4.37604 4.47182 4.55702 4.58631 4.75070 4.88641 4.94852 4.98389 5.19196 5.22748 5.29095 5.30952 5.32847 5.40710 5.42153 5.46388 5.59815 5.62787 5.72002 5.90504 5.91986 6.21804 6.29888 6.39549 6.51195 6.63273 6.68537 6.87239 7.07971 7.12745 7.21086 7.60552 7.79666 7.87309 8.37216 8.85846 9.45269 10.97601 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.036584 B = 0.001795 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.175772 B =15598.034933 C =16147.680237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.356 6.356 4 C 0.056 3.944 5 H 0.127 0.873 6 C -0.152 4.152 7 C -0.196 4.196 8 H 0.133 0.867 9 C 0.546 3.454 10 O -0.520 6.520 11 N -0.664 5.664 12 C 0.173 3.827 13 C -0.167 4.167 14 C -0.063 4.063 15 C -0.220 4.220 16 C 0.161 3.839 17 O -0.319 6.319 18 C 0.072 3.928 19 C -0.009 4.009 20 C -0.528 4.528 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.897 5.897 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 C -0.186 4.186 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.413 0.587 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.930 -11.638 -9.632 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.275 6.275 4 C -0.003 4.003 5 H 0.144 0.856 6 C -0.190 4.190 7 C -0.217 4.217 8 H 0.151 0.849 9 C 0.334 3.666 10 O -0.395 6.395 11 N -0.309 5.309 12 C 0.080 3.920 13 C -0.187 4.187 14 C -0.082 4.082 15 C -0.239 4.239 16 C 0.114 3.886 17 O -0.232 6.232 18 C -0.002 4.002 19 C -0.046 4.046 20 C -0.566 4.566 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.707 3.293 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.188 1.188 28 C -0.207 4.207 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.249 0.751 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.550 -11.987 -9.692 33.329 hybrid contribution 0.057 1.115 -0.098 1.121 sum -29.493 -10.873 -9.790 32.922 Atomic orbital electron populations 1.21761 0.93387 1.02558 1.03230 1.22600 0.95633 0.82991 1.00734 1.87812 1.18344 1.27396 1.93919 1.22612 0.82197 0.94259 1.01267 0.85590 1.23483 1.03281 1.01947 0.90287 1.22643 0.96872 1.05224 0.96991 0.84933 1.19691 0.85267 0.83907 0.77781 1.90714 1.64264 1.24973 1.59551 1.43335 1.17589 1.14747 1.55198 1.17294 0.84633 0.94924 0.95198 1.21041 0.98505 0.97806 1.01382 1.20824 0.92621 0.98013 0.96733 1.21434 1.02180 0.93845 1.06485 1.18757 0.89426 0.87343 0.93113 1.86108 1.26256 1.36340 1.74475 1.23108 0.79351 1.01633 0.96082 1.19585 0.94471 0.92292 0.98263 1.20843 0.96475 1.01839 1.37404 0.90708 1.24929 0.94677 0.98725 0.94625 1.69893 1.05804 1.33943 1.43890 0.86758 0.78012 0.83990 0.80509 1.20066 1.21160 1.18769 1.19986 0.92224 1.00427 1.08077 0.91758 0.90784 0.91744 0.92803 0.92784 0.86815 0.87204 0.75149 0.84727 0.85603 0.84863 0.92386 0.92371 0.95416 0.95840 0.92436 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.06 0.34 6.53 37.16 0.24 0.58 16 3 O -0.36 -2.92 10.60 -35.23 -0.37 -3.30 16 4 C 0.06 0.44 5.96 -26.73 -0.16 0.28 16 5 H 0.13 1.04 7.45 -51.93 -0.39 0.65 16 6 C -0.15 -1.03 10.18 -26.73 -0.27 -1.30 16 7 C -0.20 -1.50 6.14 -91.77 -0.56 -2.06 16 8 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 9 C 0.55 5.77 7.46 -10.99 -0.08 5.68 16 10 O -0.52 -7.18 13.70 5.56 0.08 -7.10 16 11 N -0.66 -6.64 5.33 -9.88 -0.05 -6.69 16 12 C 0.17 2.28 6.29 -83.72 -0.53 1.76 16 13 C -0.17 -2.32 8.70 -39.37 -0.34 -2.66 16 14 C -0.06 -0.87 10.03 -39.63 -0.40 -1.27 16 15 C -0.22 -3.41 9.04 -39.40 -0.36 -3.76 16 16 C 0.16 2.69 6.68 -39.24 -0.26 2.43 16 17 O -0.32 -6.13 10.13 -19.42 -0.20 -6.33 16 18 C 0.07 1.47 4.68 37.16 0.17 1.65 16 19 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 20 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 21 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 24 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 28 C -0.19 -2.67 9.90 -39.25 -0.39 -3.06 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.41 2.78 8.82 -40.82 -0.36 2.42 16 37 H 0.13 1.87 6.23 -52.49 -0.33 1.54 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 2.02 6.29 -52.48 -0.33 1.69 16 40 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 41 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 42 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -33.03 379.79 -8.60 -41.64 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.78 Total: 1.19 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -3.11 Total: -15.52 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.72 Total: -33.08 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.49 Total: -16.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.03 -8.60 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077702425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.439 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds