Wall clock time and date at job start Tue Mar 31 2020 12:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46816 * 2 1 4 4 C 1.35973 * 116.99915 * 180.02562 * 3 2 1 5 5 C 1.38717 * 119.98619 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.01496 * 180.02562 * 5 4 3 7 7 C 1.38849 * 119.98093 * 359.97438 * 6 5 4 8 8 N 1.40115 * 120.01104 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99886 * 7.91828 * 8 7 6 10 10 C 1.50705 * 109.47215 * 272.22016 * 9 8 7 11 11 H 1.07999 * 120.00040 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00257 * 180.27581 * 10 9 8 13 13 N 1.31516 * 119.99799 * 359.72891 * 12 10 9 14 14 Si 1.86794 * 120.00269 * 179.72421 * 12 10 9 15 15 H 1.48504 * 109.47261 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47289 * 120.00038 * 14 12 10 17 17 H 1.48500 * 109.47365 * 240.00112 * 14 12 10 18 18 C 1.34777 * 119.99971 * 187.92037 * 8 7 6 19 19 O 1.21291 * 119.99890 * 6.28195 * 18 8 7 20 20 C 1.50696 * 119.99870 * 186.28112 * 18 8 7 21 21 H 1.08999 * 110.27984 * 311.10009 * 20 18 8 22 22 C 1.54950 * 110.30716 * 73.29443 * 20 18 8 23 23 C 1.55304 * 100.94171 * 155.36017 * 22 20 18 24 24 C 1.54383 * 102.25367 * 325.86238 * 23 22 20 25 25 O 1.43245 * 107.58751 * 21.35935 * 24 23 22 26 26 C 1.38838 * 119.97655 * 0.25541 * 7 6 5 27 27 C 1.38096 * 119.98250 * 359.47082 * 26 7 6 28 28 H 1.09002 * 109.46985 * 299.99486 * 1 2 3 29 29 H 1.08996 * 109.47733 * 59.99827 * 1 2 3 30 30 H 1.09000 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46985 * 240.00514 * 2 1 3 32 32 H 1.08997 * 109.47478 * 120.00913 * 2 1 3 33 33 H 1.07993 * 119.99493 * 0.02573 * 5 4 3 34 34 H 1.08002 * 120.00921 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47407 * 152.22562 * 9 8 7 36 36 H 1.08998 * 109.47453 * 32.22097 * 9 8 7 37 37 H 0.97002 * 119.99694 * 179.97438 * 13 12 10 38 38 H 1.09003 * 111.12507 * 273.27391 * 22 20 18 39 39 H 1.08995 * 111.12546 * 37.44012 * 22 20 18 40 40 H 1.09003 * 110.85027 * 207.67579 * 23 22 20 41 41 H 1.09000 * 111.02987 * 84.13319 * 23 22 20 42 42 H 1.08994 * 109.83700 * 261.84453 * 24 23 22 43 43 H 1.09002 * 109.83322 * 140.86977 * 24 23 22 44 44 H 1.07996 * 120.01125 * 179.72589 * 26 7 6 45 45 H 1.07997 * 119.99348 * 180.25712 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 3.8841 2.8075 0.0000 6 6 5.2530 2.9892 -0.0011 7 6 6.0990 1.8882 -0.0022 8 7 7.4881 2.0718 -0.0038 9 6 8.0498 3.4136 0.1704 10 6 8.1643 4.0885 -1.1723 11 1 7.8504 3.5696 -2.0660 12 6 8.6754 5.3659 -1.2604 13 7 9.0581 5.9976 -0.1722 14 14 8.8245 6.1995 -2.9254 15 1 8.3285 5.2834 -3.9838 16 1 8.0151 7.4445 -2.9300 17 1 10.2478 6.5334 -3.1862 18 6 8.3075 1.0141 -0.1657 19 8 7.8452 -0.0773 -0.4233 20 6 9.7979 1.1873 -0.0266 21 1 10.1358 2.0401 -0.6154 22 6 10.1809 1.3743 1.4632 23 6 11.6560 0.8888 1.4516 24 6 11.6238 -0.2317 0.3900 25 8 10.4796 -0.0070 -0.4420 26 6 5.5681 0.6054 -0.0075 27 6 4.1990 0.4251 -0.0007 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.2259 3.6637 0.0012 34 1 5.6654 3.9874 -0.0011 35 1 9.0379 3.3378 0.6242 36 1 7.3969 3.9997 0.8171 37 1 9.4181 6.8962 -0.2343 38 1 10.1144 2.4218 1.7574 39 1 9.5659 0.7471 2.1086 40 1 11.9415 0.4919 2.4258 41 1 12.3294 1.6907 1.1489 42 1 11.5405 -1.2022 0.8790 43 1 12.5316 -0.1966 -0.2124 44 1 6.2256 -0.2513 -0.0128 45 1 3.7858 -0.5727 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078380357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:42 Heat of formation + Delta-G solvation = -94.159953 kcal Electronic energy + Delta-G solvation = -27315.898052 eV Core-core repulsion = 23491.750677 eV Total energy + Delta-G solvation = -3824.147375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04874 -40.83648 -39.78242 -38.19124 -36.72734 -34.60785 -33.21613 -32.73630 -31.83209 -31.22020 -29.76743 -28.73464 -25.50222 -25.12443 -24.29475 -23.49490 -22.60717 -22.11056 -20.60957 -19.19764 -18.81212 -18.74188 -17.97470 -17.37959 -16.98275 -16.82355 -16.51852 -16.27415 -15.93297 -15.53714 -15.50849 -14.73379 -14.62884 -14.43279 -14.29161 -14.17585 -14.03098 -13.74167 -13.44120 -13.33675 -13.12998 -12.91880 -12.86410 -12.80233 -12.63998 -12.52537 -12.25130 -12.12211 -11.99652 -11.87703 -11.76511 -11.57377 -10.76839 -10.65462 -10.53759 -10.15474 -9.94459 -8.52552 -8.20685 -6.39815 0.33066 0.41636 1.37941 1.41736 1.48006 1.55733 1.86760 2.32613 2.37949 2.88080 2.94460 3.05057 3.33377 3.53829 3.90652 3.91812 3.96668 4.08547 4.09764 4.19658 4.22244 4.31962 4.35952 4.40478 4.51141 4.54358 4.66726 4.73639 4.76625 4.83245 4.90896 4.94449 4.97074 5.05901 5.12479 5.17984 5.19228 5.24483 5.36965 5.44784 5.61133 5.64951 5.89075 5.94282 6.06837 6.39095 6.52705 6.70762 7.08708 7.31793 8.79670 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004562 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.076358 B = 6135.718460 C = 8367.095776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.329 6.329 4 C 0.096 3.904 5 C -0.134 4.134 6 C -0.112 4.112 7 C 0.107 3.893 8 N -0.533 5.533 9 C 0.238 3.762 10 C -0.551 4.551 11 H 0.043 0.957 12 C 0.035 3.965 13 N -0.909 5.909 14 Si 0.950 3.050 15 H -0.280 1.280 16 H -0.275 1.275 17 H -0.273 1.273 18 C 0.510 3.490 19 O -0.552 6.552 20 C 0.071 3.929 21 H 0.097 0.903 22 C -0.140 4.140 23 C -0.140 4.140 24 C 0.040 3.960 25 O -0.389 6.389 26 C -0.144 4.144 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.162 0.838 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -9.445 5.167 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.244 6.244 4 C 0.051 3.949 5 C -0.153 4.153 6 C -0.132 4.132 7 C 0.012 3.988 8 N -0.254 5.254 9 C 0.118 3.882 10 C -0.589 4.589 11 H 0.062 0.938 12 C -0.167 4.167 13 N -0.547 5.547 14 Si 0.776 3.224 15 H -0.205 1.205 16 H -0.201 1.201 17 H -0.198 1.198 18 C 0.300 3.700 19 O -0.433 6.433 20 C 0.011 3.989 21 H 0.114 0.886 22 C -0.178 4.178 23 C -0.177 4.177 24 C -0.036 4.036 25 O -0.308 6.308 26 C -0.164 4.164 27 C -0.204 4.204 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.179 0.821 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.828 -9.810 4.942 11.998 hybrid contribution 0.314 0.800 -0.903 1.246 sum -4.514 -9.010 4.039 10.857 Atomic orbital electron populations 1.21788 0.91057 1.04178 1.03244 1.23057 0.97126 0.81052 1.01998 1.86033 1.18195 1.31018 1.89146 1.18967 0.82746 0.93944 0.99277 1.20340 0.93838 0.95721 1.05382 1.20881 0.92480 0.98345 1.01508 1.18224 0.82985 0.94681 1.02881 1.45845 1.03839 1.09986 1.65744 1.19551 0.95255 0.76349 0.97015 1.21508 1.43650 1.00511 0.93238 0.93834 1.25453 0.94284 0.97159 0.99772 1.69967 1.42067 1.13834 1.28824 0.85623 0.78226 0.78412 0.80159 1.20461 1.20053 1.19796 1.20989 0.89839 0.83218 0.75931 1.90308 1.76695 1.27362 1.48918 1.22766 0.88221 0.89325 0.98617 0.88588 1.23250 0.98274 1.03956 0.92331 1.23116 0.94808 0.98589 1.01188 1.23475 0.88146 0.99561 0.92431 1.88443 1.42112 1.43396 1.56849 1.22217 0.96144 0.97448 1.00544 1.21329 0.92910 0.98868 1.07247 0.91644 0.91874 0.88103 0.91742 0.91330 0.83652 0.85003 0.92610 0.94778 0.91959 0.88400 0.90176 0.86824 0.89127 0.89984 0.89487 0.82094 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.87 5.46 71.98 0.39 1.27 16 3 O -0.33 -9.53 10.14 -93.24 -0.95 -10.47 16 4 C 0.10 3.21 6.69 22.50 0.15 3.36 16 5 C -0.13 -4.74 9.98 22.35 0.22 -4.52 16 6 C -0.11 -4.56 9.09 22.38 0.20 -4.35 16 7 C 0.11 4.62 6.49 38.11 0.25 4.87 16 8 N -0.53 -23.86 2.69 -635.17 -1.71 -25.56 16 9 C 0.24 11.13 4.17 85.63 0.36 11.49 16 10 C -0.55 -28.52 9.03 25.60 0.23 -28.29 16 11 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 12 C 0.04 1.80 5.46 84.65 0.46 2.26 16 13 N -0.91 -47.40 13.29 21.45 0.28 -47.11 16 14 Si 0.95 41.50 29.54 68.60 2.03 43.52 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 C 0.51 22.49 6.91 87.66 0.61 23.09 16 19 O -0.55 -26.10 13.09 15.27 0.20 -25.91 16 20 C 0.07 2.71 2.89 30.51 0.09 2.80 16 21 H 0.10 3.95 7.45 -2.39 -0.02 3.94 16 22 C -0.14 -4.17 6.09 32.05 0.20 -3.98 16 23 C -0.14 -3.08 7.02 31.86 0.22 -2.86 16 24 C 0.04 1.00 7.79 72.45 0.56 1.57 16 25 O -0.39 -14.45 10.62 -130.65 -1.39 -15.84 16 26 C -0.14 -5.77 8.97 22.38 0.20 -5.57 16 27 C -0.18 -6.19 9.03 22.35 0.20 -5.99 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.26 7.66 -2.39 -0.02 1.25 16 32 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 33 H 0.15 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.13 5.72 6.21 -2.91 -0.02 5.70 16 35 H 0.06 2.54 4.58 -2.39 -0.01 2.53 16 36 H 0.03 1.67 6.70 -2.39 -0.02 1.66 16 37 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 38 H 0.10 2.97 6.56 -2.39 -0.02 2.95 16 39 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.16 6.89 4.73 -44.75 -0.21 6.68 16 45 H 0.15 4.03 6.29 -2.91 -0.02 4.01 16 Total: -1.00 -63.71 363.09 4.36 -59.35 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.80 Total: 28.30 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 5.09 Total: -6.28 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.42 Total: -72.67 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -2.13 Total: -52.21 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -63.71 4.36 -59.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078380357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.813 kcal (2) G-P(sol) polarization free energy of solvation -63.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds